Wall clock time and date at job start Mon Mar 30 2020 21:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 117.00082 * 2 1 4 4 C 1.38139 * 119.93095 * 359.97438 * 3 2 1 5 5 C 1.40599 * 119.69431 * 179.97438 * 4 3 2 6 6 C 1.41406 * 120.21954 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99699 * 24.44820 * 6 5 4 8 8 C 1.39932 * 120.00131 * 204.45507 * 6 5 4 9 9 N 1.30831 * 120.00282 * 17.88473 * 8 6 5 10 10 Si 1.86799 * 119.99920 * 197.88348 * 8 6 5 11 11 H 1.48509 * 109.47040 * 89.99822 * 10 8 6 12 12 H 1.48500 * 109.47405 * 209.99629 * 10 8 6 13 13 H 1.48495 * 109.47462 * 330.00260 * 10 8 6 14 14 C 1.40765 * 119.56753 * 0.02562 * 5 4 3 15 15 C 1.37623 * 119.85316 * 359.97438 * 14 5 4 16 16 C 1.50707 * 119.84810 * 180.02562 * 15 14 5 17 17 C 1.53001 * 109.47090 * 89.99616 * 16 15 14 18 18 C 1.50706 * 109.46718 * 180.02562 * 17 16 15 19 19 O 1.20828 * 120.00142 * 0.02562 * 18 17 16 20 20 O 1.34224 * 119.99499 * 180.02562 * 18 17 16 21 21 C 1.38562 * 120.30814 * 359.97438 * 15 14 5 22 22 H 1.08997 * 109.46651 * 60.00105 * 1 2 3 23 23 H 1.08994 * 109.46867 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46923 * 300.00263 * 1 2 3 25 25 H 1.08002 * 120.15141 * 0.28178 * 4 3 2 26 26 H 0.96993 * 120.00145 * 179.97438 * 9 8 6 27 27 H 1.07995 * 120.07308 * 179.97438 * 14 5 4 28 28 H 1.08994 * 109.46956 * 210.00305 * 16 15 14 29 29 H 1.08999 * 109.46477 * 329.99726 * 16 15 14 30 30 H 1.08991 * 109.47294 * 300.00079 * 17 16 15 31 31 H 1.08994 * 109.46914 * 60.00701 * 17 16 15 32 32 H 0.96707 * 116.99668 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.78045 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2923 2.3686 -0.0005 5 6 1.9358 3.6187 0.0000 6 6 1.1751 4.8107 -0.0011 7 1 0.1664 4.8079 0.3849 8 6 1.7293 5.9938 -0.5023 9 7 2.7835 5.9462 -1.2755 10 14 0.9636 7.6413 -0.0674 11 1 1.5897 8.1661 1.1728 12 1 1.1876 8.6002 -1.1790 13 1 -0.4950 7.4673 0.1500 14 6 3.3423 3.6759 0.0006 15 6 4.0753 2.5111 0.0011 16 6 5.5811 2.5725 0.0022 17 6 6.0896 2.5933 1.4452 18 6 7.5954 2.6554 1.4462 19 8 8.1997 2.6808 0.4003 20 8 8.2650 2.6823 2.6092 21 6 3.4353 1.2821 0.0016 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2137 2.3136 0.0036 26 1 3.1674 6.7663 -1.6232 27 1 3.8450 4.6317 0.0006 28 1 5.9808 1.6982 -0.5113 29 1 5.9082 3.4766 -0.5114 30 1 5.6899 3.4677 1.9586 31 1 5.7625 1.6893 1.9587 32 1 9.2300 2.7217 2.5593 33 1 4.0190 0.3734 0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396040083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:56 Heat of formation + Delta-G solvation = -130.260849 kcal Electronic energy + Delta-G solvation = -17677.427621 eV Core-core repulsion = 14667.517321 eV Total energy + Delta-G solvation = -3009.910300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06240 -38.79551 -36.72494 -35.98990 -34.12691 -32.55785 -29.72963 -28.52712 -26.68971 -25.21151 -24.43858 -21.02709 -20.95302 -19.49470 -18.01936 -17.39150 -16.25540 -16.01065 -15.65539 -15.41256 -14.84958 -14.69465 -14.52922 -13.43863 -13.27244 -12.99528 -12.47803 -12.26419 -11.99065 -11.57111 -11.41011 -11.28513 -11.23277 -11.10572 -10.85023 -10.49537 -10.44894 -10.39513 -9.97768 -9.80486 -9.41626 -9.10621 -7.49642 -6.91782 -6.79615 -4.44895 2.39656 2.67040 2.90999 3.04121 3.06871 3.19132 3.32716 3.87976 4.23205 4.53249 5.23520 5.43986 5.48243 5.68015 5.71019 5.78087 5.94349 5.99031 6.14508 6.26616 6.43713 6.55175 6.69359 6.74073 6.87760 6.97673 7.15629 7.33590 7.68220 7.89899 8.00494 8.04807 8.16018 8.34449 8.60166 8.83120 8.94393 10.11868 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.007784 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.334942 B = 3596.418126 C = 5391.052981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.336 6.336 3 C 0.140 3.860 4 C -0.306 4.306 5 C 0.136 3.864 6 C -0.461 4.461 7 H 0.077 0.923 8 C 0.078 3.922 9 N -0.787 5.787 10 Si 0.908 3.092 11 H -0.267 1.267 12 H -0.277 1.277 13 H -0.262 1.262 14 C -0.178 4.178 15 C -0.049 4.049 16 C -0.056 4.056 17 C -0.106 4.106 18 C 0.478 3.522 19 O -0.519 6.519 20 O -0.522 6.522 21 C -0.260 4.260 22 H 0.048 0.952 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.282 0.718 27 H 0.121 0.879 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.403 0.597 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -3.317 5.009 6.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.250 6.250 3 C 0.096 3.904 4 C -0.327 4.327 5 C 0.133 3.867 6 C -0.491 4.491 7 H 0.096 0.904 8 C -0.141 4.141 9 N -0.411 5.411 10 Si 0.732 3.268 11 H -0.192 1.192 12 H -0.203 1.203 13 H -0.186 1.186 14 C -0.197 4.197 15 C -0.049 4.049 16 C -0.094 4.094 17 C -0.143 4.143 18 C 0.321 3.679 19 O -0.407 6.407 20 O -0.333 6.333 21 C -0.279 4.279 22 H 0.067 0.933 23 H 0.101 0.899 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.261 0.739 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.187 -3.356 4.583 6.514 hybrid contribution 0.025 0.981 0.032 0.982 sum 3.213 -2.375 4.616 6.105 Atomic orbital electron populations 1.22768 0.80266 1.01762 1.01069 1.85909 1.19979 1.29237 1.89919 1.18704 0.91948 0.82770 0.96962 1.21032 0.97696 0.92254 1.21683 1.17353 0.91956 0.91338 0.86019 1.19568 1.00727 0.92589 1.36173 0.90440 1.25915 0.94383 1.01303 0.92514 1.69834 1.19021 1.30463 1.21800 0.86320 0.80568 0.80809 0.79099 1.19191 1.20264 1.18624 1.21168 0.93864 0.96399 1.08274 1.19036 0.92576 0.93068 1.00239 1.20262 0.93033 1.03179 0.92883 1.21474 0.85341 1.06103 1.01398 1.23965 0.92300 0.71062 0.80580 1.90702 1.70698 1.45939 1.33392 1.84592 1.26354 1.85801 1.36595 1.19433 0.90457 0.96291 1.21768 0.93338 0.89935 0.93444 0.88322 0.90731 0.86157 0.91368 0.90705 0.87412 0.87615 0.73873 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.59 16 2 O -0.34 -7.01 10.50 -19.45 -0.20 -7.21 16 3 C 0.14 3.25 6.68 -39.29 -0.26 2.99 16 4 C -0.31 -7.48 8.77 -38.73 -0.34 -7.82 16 5 C 0.14 3.55 5.57 -106.85 -0.60 2.95 16 6 C -0.46 -11.93 9.05 -37.74 -0.34 -12.28 16 7 H 0.08 1.93 7.91 -52.48 -0.42 1.52 16 8 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 9 N -0.79 -19.83 10.95 55.55 0.61 -19.22 16 10 Si 0.91 18.20 29.59 -169.99 -5.03 13.17 16 11 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 13 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 14 C -0.18 -4.43 8.34 -38.85 -0.32 -4.75 16 15 C -0.05 -1.09 5.12 -104.72 -0.54 -1.62 16 16 C -0.06 -1.05 4.62 -27.88 -0.13 -1.18 16 17 C -0.11 -1.63 5.79 -27.88 -0.16 -1.79 16 18 C 0.48 7.07 8.33 36.01 0.30 7.37 16 19 O -0.52 -9.20 16.74 -18.75 -0.31 -9.51 16 20 O -0.52 -6.05 13.42 -39.24 -0.53 -6.58 16 21 C -0.26 -5.87 9.64 -39.14 -0.38 -6.25 16 22 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.74 7.65 -51.93 -0.40 0.35 16 25 H 0.10 2.26 6.28 -52.49 -0.33 1.93 16 26 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 27 H 0.12 3.08 6.15 -52.49 -0.32 2.76 16 28 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 29 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 30 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.40 2.83 9.10 45.56 0.41 3.25 16 33 H 0.10 2.00 8.06 -52.48 -0.42 1.57 16 LS Contribution 291.01 15.07 4.39 4.39 Total: -1.00 -29.99 291.01 -6.06 -36.04 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.11 Total: 7.90 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -1.87 Total: -18.97 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.61 Total: -19.22 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -1.04 Total: -23.30 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.99 -6.06 -36.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396040083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.221 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds