Wall clock time and date at job start Mon Mar 30 2020 21:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 117.00082 * 2 1 4 4 C 1.38139 * 119.93095 * 359.97438 * 3 2 1 5 5 C 1.40599 * 119.69431 * 179.97438 * 4 3 2 6 6 C 1.41406 * 120.21954 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99699 * 24.44820 * 6 5 4 8 8 C 1.39932 * 120.00131 * 204.45507 * 6 5 4 9 9 N 1.30831 * 120.00282 * 17.88473 * 8 6 5 10 10 Si 1.86799 * 119.99920 * 197.88348 * 8 6 5 11 11 H 1.48509 * 109.47040 * 89.99822 * 10 8 6 12 12 H 1.48500 * 109.47405 * 209.99629 * 10 8 6 13 13 H 1.48495 * 109.47462 * 330.00260 * 10 8 6 14 14 C 1.40765 * 119.56753 * 0.02562 * 5 4 3 15 15 C 1.37623 * 119.85316 * 359.97438 * 14 5 4 16 16 C 1.50707 * 119.84810 * 180.02562 * 15 14 5 17 17 C 1.53001 * 109.47090 * 89.99616 * 16 15 14 18 18 C 1.50706 * 109.46718 * 180.02562 * 17 16 15 19 19 O 1.20828 * 120.00142 * 0.02562 * 18 17 16 20 20 O 1.34224 * 119.99499 * 180.02562 * 18 17 16 21 21 C 1.38562 * 120.30814 * 359.97438 * 15 14 5 22 22 H 1.08997 * 109.46651 * 60.00105 * 1 2 3 23 23 H 1.08994 * 109.46867 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46923 * 300.00263 * 1 2 3 25 25 H 1.08002 * 120.15141 * 0.28178 * 4 3 2 26 26 H 0.96993 * 120.00145 * 179.97438 * 9 8 6 27 27 H 1.07995 * 120.07308 * 179.97438 * 14 5 4 28 28 H 1.08994 * 109.46956 * 210.00305 * 16 15 14 29 29 H 1.08999 * 109.46477 * 329.99726 * 16 15 14 30 30 H 1.08991 * 109.47294 * 300.00079 * 17 16 15 31 31 H 1.08994 * 109.46914 * 60.00701 * 17 16 15 32 32 H 0.96707 * 116.99668 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.78045 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2923 2.3686 -0.0005 5 6 1.9358 3.6187 0.0000 6 6 1.1751 4.8107 -0.0011 7 1 0.1664 4.8079 0.3849 8 6 1.7293 5.9938 -0.5023 9 7 2.7835 5.9462 -1.2755 10 14 0.9636 7.6413 -0.0674 11 1 1.5897 8.1661 1.1728 12 1 1.1876 8.6002 -1.1790 13 1 -0.4950 7.4673 0.1500 14 6 3.3423 3.6759 0.0006 15 6 4.0753 2.5111 0.0011 16 6 5.5811 2.5725 0.0022 17 6 6.0896 2.5933 1.4452 18 6 7.5954 2.6554 1.4462 19 8 8.1997 2.6808 0.4003 20 8 8.2650 2.6823 2.6092 21 6 3.4353 1.2821 0.0016 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2137 2.3136 0.0036 26 1 3.1674 6.7663 -1.6232 27 1 3.8450 4.6317 0.0006 28 1 5.9808 1.6982 -0.5113 29 1 5.9082 3.4766 -0.5114 30 1 5.6899 3.4677 1.9586 31 1 5.7625 1.6893 1.9587 32 1 9.2300 2.7217 2.5593 33 1 4.0190 0.3734 0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396040083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:56 Heat of formation + Delta-G solvation = -148.739405 kcal Electronic energy + Delta-G solvation = -17678.228911 eV Core-core repulsion = 14667.517321 eV Total energy + Delta-G solvation = -3010.711590 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25064 -40.49020 -38.38050 -37.12977 -35.86312 -34.19103 -31.47493 -30.15609 -28.24860 -26.99361 -25.91751 -22.80618 -22.29178 -21.11919 -19.42619 -18.89537 -17.71783 -17.33255 -17.16792 -17.01376 -16.38384 -16.34393 -16.31478 -14.94585 -14.64956 -14.43422 -14.03212 -13.85005 -13.54773 -13.20119 -12.90783 -12.82265 -12.67832 -12.53008 -12.45937 -12.09910 -11.97816 -11.80776 -11.61072 -11.50855 -11.18644 -10.90565 -9.34928 -8.73801 -8.62307 -6.38659 0.90270 1.12967 1.23266 1.39328 1.52060 1.53236 2.19286 2.20437 2.68929 2.71524 3.65308 4.02245 4.11761 4.21910 4.45432 4.45932 4.57817 4.67310 4.72350 4.75273 4.82730 4.95521 5.06473 5.13782 5.17777 5.27703 5.52592 5.63282 5.85673 6.02971 6.16478 6.31071 6.52232 6.75729 6.92856 7.03782 7.10023 8.31246 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.007784 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.334942 B = 3596.418126 C = 5391.052981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.343 6.343 3 C 0.138 3.862 4 C -0.323 4.323 5 C 0.107 3.893 6 C -0.496 4.496 7 H 0.075 0.925 8 C 0.039 3.961 9 N -0.817 5.817 10 Si 0.981 3.019 11 H -0.260 1.260 12 H -0.269 1.269 13 H -0.259 1.259 14 C -0.203 4.203 15 C -0.039 4.039 16 C -0.050 4.050 17 C -0.101 4.101 18 C 0.491 3.509 19 O -0.552 6.552 20 O -0.510 6.510 21 C -0.267 4.267 22 H 0.045 0.955 23 H 0.124 0.876 24 H 0.050 0.950 25 H 0.105 0.895 26 H 0.289 0.711 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.427 0.573 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -3.670 5.924 7.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.257 6.257 3 C 0.094 3.906 4 C -0.343 4.343 5 C 0.105 3.895 6 C -0.525 4.525 7 H 0.093 0.907 8 C -0.177 4.177 9 N -0.442 5.442 10 Si 0.801 3.199 11 H -0.185 1.185 12 H -0.194 1.194 13 H -0.183 1.183 14 C -0.222 4.222 15 C -0.040 4.040 16 C -0.088 4.088 17 C -0.139 4.139 18 C 0.335 3.665 19 O -0.443 6.443 20 O -0.324 6.324 21 C -0.287 4.287 22 H 0.064 0.936 23 H 0.142 0.858 24 H 0.069 0.931 25 H 0.123 0.877 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.288 0.712 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.397 -3.733 5.522 7.481 hybrid contribution -0.024 0.949 -0.232 0.977 sum 3.373 -2.784 5.290 6.863 Atomic orbital electron populations 1.23102 0.77812 1.04551 1.01112 1.85897 1.22476 1.27831 1.89508 1.18870 0.92455 0.83321 0.95960 1.21167 0.98253 0.92365 1.22560 1.17740 0.92849 0.92245 0.86686 1.19806 1.01063 0.93812 1.37770 0.90683 1.26733 0.94714 1.04526 0.91714 1.69888 1.20191 1.31803 1.22363 0.85226 0.79628 0.75987 0.79035 1.18495 1.19357 1.18256 1.21112 0.93771 0.96739 1.10605 1.19329 0.94430 0.92229 0.97986 1.20161 0.90616 1.02735 0.95260 1.21310 0.86295 1.07176 0.99085 1.23591 0.91917 0.70234 0.80711 1.90704 1.71257 1.47693 1.34685 1.84518 1.28376 1.84910 1.34581 1.19762 0.90674 0.97049 1.21191 0.93597 0.85790 0.93106 0.87706 0.90027 0.87594 0.90712 0.92131 0.87114 0.85874 0.71169 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.81 113.37 1.11 2.00 16 2 O -0.34 -13.81 10.50 -92.50 -0.97 -14.78 16 3 C 0.14 6.39 6.68 22.46 0.15 6.54 16 4 C -0.32 -16.02 8.77 22.82 0.20 -15.82 16 5 C 0.11 5.76 5.57 -21.31 -0.12 5.64 16 6 C -0.50 -26.35 9.05 23.46 0.21 -26.14 16 7 H 0.08 3.86 7.91 -2.91 -0.02 3.84 16 8 C 0.04 1.94 5.14 85.25 0.44 2.38 16 9 N -0.82 -42.12 10.95 21.82 0.24 -41.88 16 10 Si 0.98 37.43 29.59 68.60 2.03 39.46 16 11 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 12 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 13 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 14 C -0.20 -10.39 8.34 22.74 0.19 -10.20 16 15 C -0.04 -1.76 5.12 -19.93 -0.10 -1.86 16 16 C -0.05 -1.85 4.62 29.85 0.14 -1.72 16 17 C -0.10 -2.98 5.79 29.85 0.17 -2.81 16 18 C 0.49 13.63 8.33 71.24 0.59 14.23 16 19 O -0.55 -18.92 16.74 21.96 0.37 -18.55 16 20 O -0.51 -10.41 13.42 -51.36 -0.69 -11.10 16 21 C -0.27 -11.90 9.64 22.56 0.22 -11.68 16 22 H 0.05 1.43 7.66 -2.39 -0.02 1.41 16 23 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 24 H 0.05 1.52 7.65 -2.39 -0.02 1.51 16 25 H 0.10 4.88 6.28 -2.91 -0.02 4.86 16 26 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 27 H 0.11 5.65 6.15 -2.91 -0.02 5.63 16 28 H 0.07 2.65 8.04 -2.39 -0.02 2.63 16 29 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 30 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.43 4.69 9.10 -74.05 -0.67 4.02 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -65.18 291.01 4.64 -60.54 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.46 Total: 25.77 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 3.20 Total: -39.45 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.24 Total: -41.88 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.29 Total: -44.43 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -65.18 4.64 -60.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396040083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.204 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds