Wall clock time and date at job start Mon Mar 30 2020 21:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38212 * 120.00276 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00181 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47707 * 89.99378 * 5 4 3 7 7 H 1.08007 * 119.99045 * 0.02562 * 6 5 4 8 8 C 1.37866 * 120.00485 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00399 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 119.99976 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46776 * 89.99723 * 10 8 6 12 12 H 1.48493 * 109.47128 * 210.00058 * 10 8 6 13 13 H 1.48500 * 109.46886 * 330.00203 * 10 8 6 14 14 C 1.38258 * 119.99786 * 359.96657 * 4 3 2 15 15 C 1.38210 * 120.00225 * 359.97438 * 14 4 3 16 16 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 17 17 C 1.50695 * 119.99818 * 0.02562 * 16 2 1 18 18 H 1.09000 * 109.47525 * 34.99534 * 17 16 2 19 19 O 1.42901 * 109.47100 * 155.00084 * 17 16 2 20 20 C 1.50702 * 109.47091 * 274.99678 * 17 16 2 21 21 O 1.20830 * 120.00094 * 245.00354 * 20 17 16 22 22 O 1.34229 * 120.00147 * 64.99739 * 20 17 16 23 23 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 26 26 H 1.08005 * 120.00042 * 359.97239 * 3 2 1 27 27 H 1.09004 * 109.47169 * 209.99864 * 5 4 3 28 28 H 1.09004 * 109.46787 * 329.99218 * 5 4 3 29 29 H 0.97002 * 120.00361 * 180.02562 * 9 8 6 30 30 H 1.07998 * 119.99835 * 179.97438 * 14 4 3 31 31 H 1.07999 * 120.00423 * 179.97438 * 15 14 4 32 32 H 0.96701 * 114.00156 * 59.99294 * 19 17 16 33 33 H 0.96699 * 116.99975 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.5855 2.9380 1.4195 7 1 4.2352 2.3302 2.2406 8 6 5.2638 4.1117 1.6708 9 7 5.4830 4.4920 2.9105 10 14 5.8703 5.1626 0.2504 11 1 4.8187 6.1414 -0.1253 12 1 7.0986 5.8889 0.6613 13 1 6.1756 4.2927 -0.9137 14 6 4.2717 0.0000 -0.0004 15 6 3.5807 -1.1970 0.0009 16 6 2.1981 -1.1970 0.0058 17 6 1.4446 -2.5020 0.0116 18 1 0.5341 -2.3985 -0.5786 19 8 2.2641 -3.5277 -0.5527 20 6 1.0857 -2.8686 1.4286 21 8 1.5627 -3.8557 1.9366 22 8 0.2362 -2.0984 2.1265 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6583 2.1326 -0.0005 27 1 5.2862 2.3720 -0.5153 28 1 3.7446 3.2619 -0.5150 29 1 5.9598 5.3180 3.0874 30 1 5.3517 0.0000 -0.0012 31 1 4.1207 -2.1323 0.0006 32 1 3.0932 -3.6748 -0.0773 33 1 0.0360 -2.3742 3.0314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396046198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:17 Heat of formation + Delta-G solvation = -128.645406 kcal Electronic energy + Delta-G solvation = -17962.133706 eV Core-core repulsion = 14952.293457 eV Total energy + Delta-G solvation = -3009.840249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78868 -39.10601 -37.04925 -35.99962 -33.90087 -32.44061 -31.39673 -29.22731 -27.07675 -26.13592 -23.05479 -21.80928 -21.51870 -19.60492 -18.38562 -17.89103 -16.89123 -16.83092 -16.06999 -15.25255 -14.69959 -14.26110 -14.10553 -13.76278 -13.61437 -13.29229 -12.73783 -12.61470 -12.33893 -12.06918 -11.89846 -11.67673 -11.60570 -11.52818 -10.97256 -10.76175 -10.49159 -10.40934 -10.05338 -9.91841 -9.44540 -8.64479 -8.31005 -7.94063 -6.13344 -4.13406 1.61184 1.82957 2.08879 2.87421 3.24207 3.32489 3.34578 3.98047 4.30751 4.35925 4.63346 4.84722 5.09890 5.16546 5.17647 5.26791 5.52427 5.76779 5.81934 5.97084 6.08897 6.10108 6.32400 6.39484 6.48191 6.78919 6.84496 6.92673 6.95223 7.20110 7.44212 7.46967 7.62920 7.74224 8.42146 8.91077 9.46323 10.99444 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.033309 B = 0.005255 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.421070 B = 5327.179609 C = 5389.585480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.059 4.059 3 C -0.122 4.122 4 C -0.012 4.012 5 C 0.012 3.988 6 C -0.515 4.515 7 H 0.073 0.927 8 C 0.070 3.930 9 N -0.898 5.898 10 Si 0.878 3.122 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.265 1.265 14 C -0.125 4.125 15 C -0.101 4.101 16 C -0.163 4.163 17 C 0.173 3.827 18 H 0.142 0.858 19 O -0.529 6.529 20 C 0.458 3.542 21 O -0.514 6.514 22 O -0.504 6.504 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.030 0.970 28 H 0.025 0.975 29 H 0.265 0.735 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.385 0.615 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -11.345 -6.233 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.012 4.012 5 C -0.025 4.025 6 C -0.553 4.553 7 H 0.092 0.908 8 C -0.132 4.132 9 N -0.537 5.537 10 Si 0.705 3.295 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.189 1.189 14 C -0.143 4.143 15 C -0.119 4.119 16 C -0.163 4.163 17 C 0.112 3.888 18 H 0.159 0.841 19 O -0.336 6.336 20 C 0.300 3.700 21 O -0.403 6.403 22 O -0.315 6.315 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.141 0.859 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.236 0.764 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.711 -11.392 -6.798 16.441 hybrid contribution 0.790 0.550 0.584 1.126 sum -8.921 -10.841 -6.214 15.354 Atomic orbital electron populations 1.20940 0.91470 1.03654 1.01823 1.19562 0.95621 0.92187 0.98564 1.20963 0.94043 0.97021 1.01978 1.20387 0.93558 0.96444 0.90781 1.18860 0.95080 0.89817 0.98779 1.20888 1.36833 1.07323 0.90265 0.90837 1.24993 0.95339 0.97291 0.95545 1.69895 1.41479 1.23507 1.18770 0.86800 0.78728 0.80819 0.83147 1.20100 1.21186 1.18917 1.21000 1.00095 0.91511 1.01698 1.20706 0.92911 0.98110 1.00187 1.19545 0.94083 0.92827 1.09888 1.20164 0.95653 0.85916 0.87090 0.84126 1.86638 1.35667 1.56246 1.55007 1.24575 0.75275 0.80059 0.90112 1.90719 1.51607 1.27214 1.70721 1.84584 1.60372 1.54909 1.31685 0.91484 0.91218 0.90576 0.85869 0.95218 0.95646 0.92517 0.85912 0.86753 0.76425 0.73288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.16 36.01 0.33 -1.10 16 2 C -0.06 -0.90 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -2.20 9.36 -39.59 -0.37 -2.57 16 4 C -0.01 -0.24 5.07 -104.62 -0.53 -0.77 16 5 C 0.01 0.27 4.17 -29.03 -0.12 0.15 16 6 C -0.52 -14.32 9.65 -34.44 -0.33 -14.65 16 7 H 0.07 2.25 7.98 -52.48 -0.42 1.83 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 10 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 14 C -0.13 -2.28 9.70 -39.58 -0.38 -2.66 16 15 C -0.10 -1.57 9.30 -39.58 -0.37 -1.94 16 16 C -0.16 -2.39 5.04 -104.62 -0.53 -2.92 16 17 C 0.17 2.13 3.08 -29.04 -0.09 2.04 16 18 H 0.14 1.45 6.99 -51.93 -0.36 1.09 16 19 O -0.53 -6.60 12.64 -55.14 -0.70 -7.29 16 20 C 0.46 5.88 7.60 36.01 0.27 6.15 16 21 O -0.51 -7.90 17.08 -25.47 -0.44 -8.33 16 22 O -0.50 -5.28 11.13 -39.26 -0.44 -5.71 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 25 H 0.08 0.80 4.44 -51.93 -0.23 0.57 16 26 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 27 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 28 H 0.03 0.57 7.51 -51.93 -0.39 0.18 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.11 1.45 6.40 -52.49 -0.34 1.11 16 32 H 0.39 4.08 7.07 45.56 0.32 4.40 16 33 H 0.41 2.64 9.10 45.56 0.41 3.05 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -33.12 283.81 -6.25 -39.37 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -2.23 Total: 5.67 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.83 Total: -17.89 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.57 Total: -21.34 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.12 -6.25 -39.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396046198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.277 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds