Wall clock time and date at job start Mon Mar 30 2020 21:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38212 * 120.00276 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00181 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47707 * 89.99378 * 5 4 3 7 7 H 1.08007 * 119.99045 * 0.02562 * 6 5 4 8 8 C 1.37866 * 120.00485 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00399 * 179.97438 * 8 6 5 10 10 Si 1.86808 * 119.99976 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46776 * 89.99723 * 10 8 6 12 12 H 1.48493 * 109.47128 * 210.00058 * 10 8 6 13 13 H 1.48500 * 109.46886 * 330.00203 * 10 8 6 14 14 C 1.38258 * 119.99786 * 359.96657 * 4 3 2 15 15 C 1.38210 * 120.00225 * 359.97438 * 14 4 3 16 16 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 17 17 C 1.50695 * 119.99818 * 0.02562 * 16 2 1 18 18 H 1.09000 * 109.47525 * 34.99534 * 17 16 2 19 19 O 1.42901 * 109.47100 * 155.00084 * 17 16 2 20 20 C 1.50702 * 109.47091 * 274.99678 * 17 16 2 21 21 O 1.20830 * 120.00094 * 245.00354 * 20 17 16 22 22 O 1.34229 * 120.00147 * 64.99739 * 20 17 16 23 23 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 26 26 H 1.08005 * 120.00042 * 359.97239 * 3 2 1 27 27 H 1.09004 * 109.47169 * 209.99864 * 5 4 3 28 28 H 1.09004 * 109.46787 * 329.99218 * 5 4 3 29 29 H 0.97002 * 120.00361 * 180.02562 * 9 8 6 30 30 H 1.07998 * 119.99835 * 179.97438 * 14 4 3 31 31 H 1.07999 * 120.00423 * 179.97438 * 15 14 4 32 32 H 0.96701 * 114.00156 * 59.99294 * 19 17 16 33 33 H 0.96699 * 116.99975 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.5855 2.9380 1.4195 7 1 4.2352 2.3302 2.2406 8 6 5.2638 4.1117 1.6708 9 7 5.4830 4.4920 2.9105 10 14 5.8703 5.1626 0.2504 11 1 4.8187 6.1414 -0.1253 12 1 7.0986 5.8889 0.6613 13 1 6.1756 4.2927 -0.9137 14 6 4.2717 0.0000 -0.0004 15 6 3.5807 -1.1970 0.0009 16 6 2.1981 -1.1970 0.0058 17 6 1.4446 -2.5020 0.0116 18 1 0.5341 -2.3985 -0.5786 19 8 2.2641 -3.5277 -0.5527 20 6 1.0857 -2.8686 1.4286 21 8 1.5627 -3.8557 1.9366 22 8 0.2362 -2.0984 2.1265 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6583 2.1326 -0.0005 27 1 5.2862 2.3720 -0.5153 28 1 3.7446 3.2619 -0.5150 29 1 5.9598 5.3180 3.0874 30 1 5.3517 0.0000 -0.0012 31 1 4.1207 -2.1323 0.0006 32 1 3.0932 -3.6748 -0.0773 33 1 0.0360 -2.3742 3.0314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396046198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:17 Heat of formation + Delta-G solvation = -152.118173 kcal Electronic energy + Delta-G solvation = -17963.151562 eV Core-core repulsion = 14952.293457 eV Total energy + Delta-G solvation = -3010.858105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82452 -40.31906 -38.04861 -37.03346 -35.55368 -34.10802 -32.80161 -30.69841 -28.36038 -27.43168 -24.71128 -23.10664 -22.64280 -20.99557 -19.34335 -18.99321 -18.90053 -17.99604 -17.12348 -16.53399 -16.34283 -15.65936 -15.42412 -14.97054 -14.70557 -14.57360 -14.28355 -13.96742 -13.66422 -13.56886 -13.29789 -12.97268 -12.66626 -12.56797 -12.45627 -12.23502 -11.97447 -11.86018 -11.73646 -11.52507 -11.18425 -10.80651 -9.61100 -9.32140 -8.31828 -6.37528 0.33505 0.52334 1.06163 1.35960 1.37832 1.49575 1.97317 2.33908 2.79779 3.02635 3.22713 3.52772 3.85518 4.03174 4.10552 4.18585 4.25179 4.55175 4.68136 4.84517 4.89939 4.92654 4.99526 5.09489 5.24037 5.40808 5.47604 5.51426 5.54885 5.65329 5.95582 6.10681 6.25151 6.33563 6.68670 6.88500 7.26266 8.84671 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.033309 B = 0.005255 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.421070 B = 5327.179609 C = 5389.585480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.139 4.139 4 C -0.048 4.048 5 C 0.018 3.982 6 C -0.521 4.521 7 H 0.026 0.974 8 C 0.008 3.992 9 N -0.949 5.949 10 Si 0.951 3.049 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.246 1.246 14 C -0.143 4.143 15 C -0.101 4.101 16 C -0.156 4.156 17 C 0.178 3.822 18 H 0.169 0.831 19 O -0.533 6.533 20 C 0.463 3.537 21 O -0.543 6.543 22 O -0.499 6.499 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.268 0.732 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.392 0.608 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.807 -12.289 -8.021 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.157 4.157 4 C -0.048 4.048 5 C -0.019 4.019 6 C -0.559 4.559 7 H 0.045 0.955 8 C -0.189 4.189 9 N -0.589 5.589 10 Si 0.774 3.226 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.169 1.169 14 C -0.161 4.161 15 C -0.118 4.118 16 C -0.156 4.156 17 C 0.117 3.883 18 H 0.185 0.815 19 O -0.341 6.341 20 C 0.306 3.694 21 O -0.434 6.434 22 O -0.313 6.313 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.244 0.756 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -11.004 -12.346 -8.583 18.633 hybrid contribution 1.093 0.737 1.239 1.809 sum -9.911 -11.609 -7.344 16.939 Atomic orbital electron populations 1.21027 0.88584 1.04440 1.03635 1.19916 0.97648 0.91222 0.96694 1.21067 0.93391 0.98370 1.02832 1.20269 0.94619 0.95708 0.94170 1.18696 0.95757 0.91852 0.95618 1.21124 1.36277 1.06807 0.91646 0.95540 1.25985 0.95518 0.98849 0.98533 1.70056 1.42963 1.24439 1.21445 0.85642 0.78278 0.78964 0.79714 1.18831 1.20890 1.16925 1.21077 1.00236 0.92066 1.02754 1.21018 0.93693 0.98236 0.98885 1.19866 0.93965 0.93978 1.07808 1.20261 0.96193 0.84402 0.87470 0.81462 1.86635 1.36210 1.55992 1.55280 1.24589 0.75021 0.79640 0.90184 1.90720 1.52810 1.28539 1.71294 1.84529 1.59488 1.54261 1.33045 0.89031 0.91175 0.89065 0.86027 0.95036 0.94986 0.92320 0.86211 0.83893 0.75585 0.71125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.16 71.24 0.65 -1.77 16 2 C -0.05 -1.56 5.88 -19.87 -0.12 -1.67 16 3 C -0.14 -4.96 9.36 22.27 0.21 -4.75 16 4 C -0.05 -1.95 5.07 -19.87 -0.10 -2.05 16 5 C 0.02 0.84 4.17 29.10 0.12 0.97 16 6 C -0.52 -30.03 9.65 25.60 0.25 -29.79 16 7 H 0.03 1.71 7.98 -2.91 -0.02 1.69 16 8 C 0.01 0.48 5.47 84.65 0.46 0.94 16 9 N -0.95 -59.24 13.96 21.44 0.30 -58.94 16 10 Si 0.95 43.40 27.47 68.60 1.88 45.29 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.25 -10.38 6.54 99.48 0.65 -9.73 16 14 C -0.14 -5.23 9.70 22.27 0.22 -5.02 16 15 C -0.10 -2.97 9.30 22.27 0.21 -2.76 16 16 C -0.16 -4.20 5.04 -19.87 -0.10 -4.30 16 17 C 0.18 3.79 3.08 29.10 0.09 3.88 16 18 H 0.17 2.70 6.99 -2.39 -0.02 2.69 16 19 O -0.53 -11.67 12.64 -129.95 -1.64 -13.32 16 20 C 0.46 10.58 7.60 71.24 0.54 11.12 16 21 O -0.54 -15.53 17.08 28.37 0.48 -15.05 16 22 O -0.50 -8.96 11.13 -51.41 -0.57 -9.53 16 23 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.09 1.56 4.44 -2.38 -0.01 1.55 16 26 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 27 H 0.03 1.44 7.14 -2.39 -0.02 1.43 16 28 H 0.03 1.44 7.51 -2.38 -0.02 1.42 16 29 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.14 3.29 6.40 -2.91 -0.02 3.27 16 32 H 0.39 7.25 7.07 -74.06 -0.52 6.72 16 33 H 0.43 4.34 9.10 -74.06 -0.67 3.67 16 Total: -1.00 -73.50 283.81 2.79 -70.71 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.09 Total: 16.04 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 2.43 Total: -35.21 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.30 Total: -58.94 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.73 Total: -37.89 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.29 kcal Total: -73.50 2.79 -70.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396046198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.410 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds