Wall clock time and date at job start Mon Mar 30 2020 21:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99954 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47354 * 89.99734 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00304 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00145 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99785 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.46780 * 90.00191 * 11 9 7 13 13 H 1.48500 * 109.46984 * 209.99728 * 11 9 7 14 14 H 1.48498 * 109.47282 * 330.00242 * 11 9 7 15 15 C 1.38217 * 120.00138 * 0.02562 * 5 4 3 16 16 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 17 17 C 1.50695 * 119.99818 * 0.02562 * 16 2 1 18 18 H 1.09000 * 109.47236 * 324.99456 * 17 16 2 19 19 O 1.42903 * 109.46951 * 204.99889 * 17 16 2 20 20 C 1.50695 * 109.47444 * 84.99942 * 17 16 2 21 21 O 1.20824 * 120.00195 * 114.99669 * 20 17 16 22 22 O 1.34231 * 120.00125 * 294.99666 * 20 17 16 23 23 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 26 26 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47425 * 210.00151 * 6 5 4 29 29 H 1.09000 * 109.47482 * 330.00207 * 6 5 4 30 30 H 0.96997 * 119.99703 * 180.02562 * 10 9 7 31 31 H 1.07999 * 119.99712 * 179.97438 * 15 5 4 32 32 H 0.96700 * 113.99928 * 300.00287 * 19 17 16 33 33 H 0.96696 * 117.00301 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 6 6.2800 0.0007 1.4240 8 1 5.5775 0.0007 2.2444 9 6 7.6353 0.0003 1.6770 10 7 8.0728 0.0004 2.9173 11 14 8.8503 -0.0004 0.2581 12 1 9.1727 1.3995 -0.1181 13 1 10.0930 -0.7007 0.6709 14 1 8.2510 -0.7004 -0.9064 15 6 3.5806 -1.1970 0.0016 16 6 2.1981 -1.1970 0.0058 17 6 1.4446 -2.5020 0.0116 18 1 0.5337 -2.3930 0.6002 19 8 2.2637 -3.5224 0.5860 20 6 1.0867 -2.8817 -1.4021 21 8 1.5640 -3.8735 -1.9006 22 8 0.2376 -2.1182 -2.1077 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6583 2.1327 -0.0004 27 1 4.1204 2.1326 0.0010 28 1 6.1424 -0.8901 -0.5104 29 1 6.1425 0.8898 -0.5111 30 1 9.0263 0.0005 3.0952 31 1 4.1207 -2.1322 0.0020 32 1 3.0932 -3.6739 0.1126 33 1 0.0385 -2.4019 -3.0104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396047878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:33 Heat of formation + Delta-G solvation = -127.277503 kcal Electronic energy + Delta-G solvation = -18072.439204 eV Core-core repulsion = 15062.658272 eV Total energy + Delta-G solvation = -3009.780932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75877 -39.11908 -36.94383 -35.94367 -34.13473 -32.31451 -31.08284 -29.32202 -27.65140 -25.65136 -22.61074 -22.33759 -21.32531 -19.93928 -18.37000 -17.72517 -16.81849 -16.36302 -16.12770 -15.32535 -14.95724 -14.35857 -13.94909 -13.81176 -13.61054 -13.33124 -12.84249 -12.49465 -12.19576 -12.08952 -11.77830 -11.66833 -11.59341 -11.47964 -11.03248 -10.82594 -10.56045 -10.21545 -10.02524 -9.95114 -9.41606 -8.62363 -8.43973 -7.83829 -6.11001 -4.10835 1.58793 1.87086 2.08367 2.88148 3.25449 3.33886 3.35883 4.07431 4.31045 4.37775 4.66955 4.85730 5.08843 5.20428 5.21475 5.23884 5.54851 5.69440 5.78170 5.99227 6.01680 6.06018 6.27669 6.34501 6.51919 6.79498 6.85848 6.91450 6.94057 7.34194 7.43325 7.46656 7.64767 7.74917 8.44873 8.94194 9.48747 11.01827 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.006082 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.910295 B = 4602.873810 C = 5040.595834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.031 4.031 6 C 0.014 3.986 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.070 3.930 10 N -0.898 5.898 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.265 1.265 15 C -0.101 4.101 16 C -0.136 4.136 17 C 0.168 3.832 18 H 0.143 0.857 19 O -0.525 6.525 20 C 0.459 3.541 21 O -0.512 6.512 22 O -0.507 6.507 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.028 0.972 29 H 0.025 0.975 30 H 0.265 0.735 31 H 0.120 0.880 32 H 0.388 0.612 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 -0.998 -9.232 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.124 4.124 5 C -0.031 4.031 6 C -0.023 4.023 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.132 4.132 10 N -0.536 5.536 11 Si 0.704 3.296 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.190 1.190 15 C -0.119 4.119 16 C -0.136 4.136 17 C 0.107 3.893 18 H 0.160 0.840 19 O -0.333 6.333 20 C 0.300 3.700 21 O -0.399 6.399 22 O -0.318 6.318 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.239 0.761 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -15.594 -1.194 -8.426 17.765 hybrid contribution 1.175 -0.122 -1.556 1.954 sum -14.418 -1.315 -9.982 17.586 Atomic orbital electron populations 1.20793 0.91481 1.01959 1.02467 1.19422 0.95492 0.92237 1.01491 1.20911 0.94251 0.96842 1.01929 1.21164 0.93617 0.98368 0.99283 1.20219 0.97818 0.91826 0.93207 1.18822 0.87241 0.97453 0.98785 1.20910 0.92533 1.51544 0.90296 0.90740 1.24994 0.98242 0.94431 0.95491 1.69896 1.14594 1.50408 1.18686 0.86817 0.80940 0.78640 0.83187 1.20152 1.21170 1.18971 1.20734 0.92245 0.98697 1.00270 1.19695 0.94171 0.92927 1.06831 1.20223 0.95823 0.86172 0.87071 0.83956 1.86664 1.35706 1.56342 1.54549 1.24607 0.75213 0.80257 0.89901 1.90728 1.51479 1.26807 1.70936 1.84587 1.60651 1.55033 1.31528 0.90566 0.91881 0.92169 0.86405 0.85972 0.95407 0.95728 0.92536 0.86234 0.76062 0.73518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.84 36.01 0.32 -0.85 16 2 C -0.09 -1.24 5.88 -104.62 -0.62 -1.85 16 3 C -0.12 -1.84 9.70 -39.58 -0.38 -2.23 16 4 C -0.11 -1.92 9.70 -39.58 -0.38 -2.30 16 5 C -0.03 -0.62 5.07 -104.63 -0.53 -1.15 16 6 C 0.01 0.33 4.17 -29.03 -0.12 0.21 16 7 C -0.52 -14.39 9.65 -34.44 -0.33 -14.73 16 8 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 11 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 15 C -0.10 -1.86 8.96 -39.58 -0.35 -2.21 16 16 C -0.14 -2.11 5.04 -104.63 -0.53 -2.64 16 17 C 0.17 2.26 3.24 -29.04 -0.09 2.16 16 18 H 0.14 1.61 6.16 -51.93 -0.32 1.29 16 19 O -0.53 -7.85 12.65 -55.14 -0.70 -8.55 16 20 C 0.46 5.91 7.63 36.00 0.27 6.18 16 21 O -0.51 -8.02 17.08 -25.46 -0.43 -8.45 16 22 O -0.51 -4.83 11.71 -39.26 -0.46 -5.29 16 23 H 0.08 0.74 7.25 -51.93 -0.38 0.36 16 24 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.06 0.57 6.02 -51.93 -0.31 0.26 16 26 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 27 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 29 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.12 2.10 6.41 -52.49 -0.34 1.76 16 32 H 0.39 5.26 7.07 45.56 0.32 5.58 16 33 H 0.41 2.17 9.10 45.56 0.41 2.58 16 LS Contribution 284.14 15.07 4.28 4.28 Total: -1.00 -33.36 284.14 -6.27 -39.63 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -2.22 Total: 5.90 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.85 Total: -17.50 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.77 Total: -26.51 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.59 Total: -22.28 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.36 -6.27 -39.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.645 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds