Wall clock time and date at job start Mon Mar 30 2020 21:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99927 * 2 1 4 4 C 1.38215 * 120.00296 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99680 * 359.95147 * 4 3 2 6 6 C 1.38212 * 120.00077 * 359.79805 * 5 4 3 7 7 C 1.50700 * 120.00073 * 180.25216 * 6 5 4 8 8 C 1.50703 * 109.46839 * 265.22481 * 7 6 5 9 9 H 1.07999 * 119.99957 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99696 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99976 * 359.97438 * 10 8 7 12 12 Si 1.86790 * 119.99881 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47231 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47300 * 119.99797 * 12 10 8 15 15 H 1.48496 * 109.47414 * 239.99965 * 12 10 8 16 16 C 1.38210 * 120.00342 * 179.97438 * 2 1 3 17 17 C 1.50700 * 119.99715 * 0.02562 * 16 2 1 18 18 H 1.09001 * 109.46962 * 192.68892 * 17 16 2 19 19 O 1.42904 * 109.47087 * 312.69385 * 17 16 2 20 20 C 1.50705 * 109.47163 * 72.69195 * 17 16 2 21 21 O 1.20830 * 119.99954 * 244.99909 * 20 17 16 22 22 O 1.34226 * 120.00144 * 64.99815 * 20 17 16 23 23 H 1.08996 * 109.46888 * 264.70568 * 1 2 3 24 24 H 1.09001 * 109.46707 * 24.70539 * 1 2 3 25 25 H 1.08994 * 109.46765 * 144.70529 * 1 2 3 26 26 H 1.08004 * 119.99934 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.00156 * 179.97438 * 4 3 2 28 28 H 1.08000 * 119.99988 * 180.02562 * 5 4 3 29 29 H 1.08994 * 109.47409 * 25.22708 * 7 6 5 30 30 H 1.09006 * 109.46648 * 145.22933 * 7 6 5 31 31 H 0.97000 * 120.00050 * 179.97438 * 11 10 8 32 32 H 0.96700 * 113.99911 * 70.32049 * 19 17 16 33 33 H 0.96699 * 117.00278 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0021 6 6 3.5807 -1.1969 0.0073 7 6 4.3342 -2.5019 0.0148 8 6 4.4846 -3.0032 -1.3985 9 1 4.0757 -2.4334 -2.2199 10 6 5.1440 -4.1891 -1.6428 11 7 5.6423 -4.8826 -0.6426 12 14 5.3310 -4.8101 -3.3945 13 1 4.6877 -3.8531 -4.3303 14 1 6.7736 -4.9324 -3.7251 15 1 4.6799 -6.1387 -3.5210 16 6 2.1981 -1.1969 0.0005 17 6 1.4446 -2.5020 0.0005 18 1 2.1312 -3.3179 0.2267 19 8 0.4149 -2.4575 0.9904 20 6 0.8279 -2.7260 -1.3562 21 8 -0.3741 -2.7460 -1.4775 22 8 1.6139 -2.9033 -2.4297 23 1 -0.3633 -0.0948 1.0233 24 1 -0.3633 0.9336 -0.4295 25 1 -0.3633 -0.8387 -0.5937 26 1 1.6582 2.1327 -0.0004 27 1 4.1204 2.1328 0.0001 28 1 5.3517 0.0001 0.0029 29 1 5.3204 -2.3496 0.4531 30 1 3.7841 -3.2357 0.6039 31 1 6.1059 -5.7172 -0.8144 32 1 -0.3158 -1.8632 0.7714 33 1 1.1725 -3.0430 -3.2787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396048191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:35 Heat of formation + Delta-G solvation = -120.746019 kcal Electronic energy + Delta-G solvation = -18914.597222 eV Core-core repulsion = 15905.099515 eV Total energy + Delta-G solvation = -3009.497706 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.58769 -38.88018 -36.59142 -35.42221 -33.90664 -32.14492 -31.54191 -28.47484 -26.82701 -25.99042 -23.35475 -21.93784 -20.58966 -19.88408 -18.03599 -17.37351 -16.46165 -16.17649 -15.71531 -15.05327 -14.82271 -14.42841 -13.71373 -13.54476 -13.18327 -12.89343 -12.59737 -12.49051 -12.32387 -11.79608 -11.63953 -11.36672 -11.18992 -11.07075 -10.93844 -10.73702 -10.52489 -10.17569 -9.83111 -9.54857 -9.37227 -8.43342 -8.20764 -7.90168 -6.05364 -4.07407 1.71872 1.96229 2.49819 3.28191 3.35813 3.40200 3.42255 4.17722 4.45031 4.72517 5.01004 5.11806 5.25325 5.31691 5.51316 5.56574 5.59099 5.69297 5.78601 5.94594 6.04865 6.23504 6.43913 6.64548 6.82218 6.89108 6.99559 7.03849 7.41627 7.55918 7.63275 7.69800 7.93056 8.25981 8.28216 8.99422 9.56557 11.04794 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.020869 B = 0.009486 C = 0.007688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.353337 B = 2950.891788 C = 3641.390387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.149 4.149 4 C -0.109 4.109 5 C -0.130 4.130 6 C -0.004 4.004 7 C 0.040 3.960 8 C -0.498 4.498 9 H 0.067 0.933 10 C 0.058 3.942 11 N -0.896 5.896 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.287 1.287 15 H -0.286 1.286 16 C -0.127 4.127 17 C 0.159 3.841 18 H 0.164 0.836 19 O -0.540 6.540 20 C 0.469 3.531 21 O -0.535 6.535 22 O -0.474 6.474 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.376 0.624 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 8.608 -0.082 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.167 4.167 4 C -0.127 4.127 5 C -0.148 4.148 6 C -0.005 4.005 7 C 0.003 3.997 8 C -0.536 4.536 9 H 0.085 0.915 10 C -0.143 4.143 11 N -0.536 5.536 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.212 1.212 16 C -0.128 4.128 17 C 0.099 3.901 18 H 0.180 0.820 19 O -0.351 6.351 20 C 0.312 3.688 21 O -0.427 6.427 22 O -0.281 6.281 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.230 0.770 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -7.009 8.092 0.590 10.722 hybrid contribution -0.413 -0.078 -1.853 1.900 sum -7.421 8.014 -1.264 10.995 Atomic orbital electron populations 1.21181 0.92444 1.03504 1.02535 1.19607 0.95095 0.93017 0.99975 1.20712 0.94250 0.96510 1.05185 1.21094 0.94117 0.97825 0.99639 1.21084 1.00069 0.91664 1.01966 1.20495 0.92139 0.97793 0.90032 1.18521 0.95121 0.87594 0.98424 1.21056 1.35174 1.05852 0.91517 0.91505 1.24975 0.95596 0.96751 0.96949 1.69966 1.37732 1.15271 1.30585 0.86498 0.77586 0.78654 0.85050 1.19561 1.21291 1.21193 1.19596 0.94169 0.92531 1.06476 1.20441 0.88558 0.99104 0.81948 0.81963 1.86720 1.34223 1.70226 1.43898 1.24353 0.85233 0.70819 0.88348 1.90637 1.16569 1.48978 1.86490 1.84886 1.42631 1.82070 1.18524 0.90505 0.91350 0.90539 0.86851 0.86727 0.85973 0.94877 0.94985 0.92967 0.77004 0.74475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.02 36.01 0.29 -1.61 16 2 C -0.08 -1.27 5.78 -104.62 -0.60 -1.88 16 3 C -0.15 -2.28 9.68 -39.58 -0.38 -2.66 16 4 C -0.11 -1.71 10.05 -39.58 -0.40 -2.11 16 5 C -0.13 -2.40 9.68 -39.58 -0.38 -2.78 16 6 C 0.00 -0.09 5.07 -104.62 -0.53 -0.62 16 7 C 0.04 0.96 4.47 -29.03 -0.13 0.83 16 8 C -0.50 -12.86 8.46 -34.44 -0.29 -13.15 16 9 H 0.07 1.73 7.03 -52.49 -0.37 1.36 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 12 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 C -0.13 -2.43 4.95 -104.62 -0.52 -2.94 16 17 C 0.16 3.05 3.39 -29.03 -0.10 2.95 16 18 H 0.16 3.44 5.56 -51.93 -0.29 3.15 16 19 O -0.54 -9.65 12.84 -55.13 -0.71 -10.36 16 20 C 0.47 8.68 6.70 36.01 0.24 8.93 16 21 O -0.53 -10.04 15.32 -25.47 -0.39 -10.43 16 22 O -0.47 -8.49 12.05 -39.25 -0.47 -8.96 16 23 H 0.08 0.92 7.29 -51.93 -0.38 0.54 16 24 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 25 H 0.08 1.13 3.84 -51.93 -0.20 0.93 16 26 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.03 0.84 8.05 -51.93 -0.42 0.42 16 30 H 0.03 0.81 6.19 -51.93 -0.32 0.49 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.38 5.76 4.43 45.56 0.20 5.96 16 33 H 0.40 5.08 9.10 45.56 0.41 5.50 16 LS Contribution 278.10 15.07 4.19 4.19 Total: -1.00 -30.36 278.10 -6.75 -37.10 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -2.18 Total: 10.85 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.90 Total: -13.58 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.74 Total: -24.63 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.57 Total: -29.76 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.36 -6.75 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396048191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.643 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds