Wall clock time and date at job start Mon Mar 30 2020 21:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99927 * 2 1 4 4 C 1.38215 * 120.00296 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99680 * 359.95147 * 4 3 2 6 6 C 1.38212 * 120.00077 * 359.79805 * 5 4 3 7 7 C 1.50700 * 120.00073 * 180.25216 * 6 5 4 8 8 C 1.50703 * 109.46839 * 265.22481 * 7 6 5 9 9 H 1.07999 * 119.99957 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99696 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99976 * 359.97438 * 10 8 7 12 12 Si 1.86790 * 119.99881 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47231 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47300 * 119.99797 * 12 10 8 15 15 H 1.48496 * 109.47414 * 239.99965 * 12 10 8 16 16 C 1.38210 * 120.00342 * 179.97438 * 2 1 3 17 17 C 1.50700 * 119.99715 * 0.02562 * 16 2 1 18 18 H 1.09001 * 109.46962 * 192.68892 * 17 16 2 19 19 O 1.42904 * 109.47087 * 312.69385 * 17 16 2 20 20 C 1.50705 * 109.47163 * 72.69195 * 17 16 2 21 21 O 1.20830 * 119.99954 * 244.99909 * 20 17 16 22 22 O 1.34226 * 120.00144 * 64.99815 * 20 17 16 23 23 H 1.08996 * 109.46888 * 264.70568 * 1 2 3 24 24 H 1.09001 * 109.46707 * 24.70539 * 1 2 3 25 25 H 1.08994 * 109.46765 * 144.70529 * 1 2 3 26 26 H 1.08004 * 119.99934 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.00156 * 179.97438 * 4 3 2 28 28 H 1.08000 * 119.99988 * 180.02562 * 5 4 3 29 29 H 1.08994 * 109.47409 * 25.22708 * 7 6 5 30 30 H 1.09006 * 109.46648 * 145.22933 * 7 6 5 31 31 H 0.97000 * 120.00050 * 179.97438 * 11 10 8 32 32 H 0.96700 * 113.99911 * 70.32049 * 19 17 16 33 33 H 0.96699 * 117.00278 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0021 6 6 3.5807 -1.1969 0.0073 7 6 4.3342 -2.5019 0.0148 8 6 4.4846 -3.0032 -1.3985 9 1 4.0757 -2.4334 -2.2199 10 6 5.1440 -4.1891 -1.6428 11 7 5.6423 -4.8826 -0.6426 12 14 5.3310 -4.8101 -3.3945 13 1 4.6877 -3.8531 -4.3303 14 1 6.7736 -4.9324 -3.7251 15 1 4.6799 -6.1387 -3.5210 16 6 2.1981 -1.1969 0.0005 17 6 1.4446 -2.5020 0.0005 18 1 2.1312 -3.3179 0.2267 19 8 0.4149 -2.4575 0.9904 20 6 0.8279 -2.7260 -1.3562 21 8 -0.3741 -2.7460 -1.4775 22 8 1.6139 -2.9033 -2.4297 23 1 -0.3633 -0.0948 1.0233 24 1 -0.3633 0.9336 -0.4295 25 1 -0.3633 -0.8387 -0.5937 26 1 1.6582 2.1327 -0.0004 27 1 4.1204 2.1328 0.0001 28 1 5.3517 0.0001 0.0029 29 1 5.3204 -2.3496 0.4531 30 1 3.7841 -3.2357 0.6039 31 1 6.1059 -5.7172 -0.8144 32 1 -0.3158 -1.8632 0.7714 33 1 1.1725 -3.0430 -3.2787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396048191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:34 Heat of formation + Delta-G solvation = -140.635956 kcal Electronic energy + Delta-G solvation = -18915.459714 eV Core-core repulsion = 15905.099515 eV Total energy + Delta-G solvation = -3010.360198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.01252 -40.27482 -38.01452 -36.85756 -35.65524 -33.74090 -33.00534 -30.02868 -28.44136 -27.27886 -25.21117 -23.34818 -21.97130 -21.37284 -19.47778 -18.82962 -18.35623 -17.70069 -17.14160 -16.65084 -16.26614 -15.99782 -15.06218 -14.91478 -14.62214 -14.29772 -14.24816 -13.88461 -13.86697 -13.20887 -13.07162 -13.00376 -12.69068 -12.58393 -12.51517 -12.40445 -12.19420 -11.69110 -11.38305 -11.36880 -11.05191 -10.50966 -9.54438 -9.34732 -8.10700 -6.18814 0.37995 0.59702 1.03990 1.42434 1.44813 1.56828 2.03143 2.46688 2.84505 3.22510 3.33974 3.64632 3.92409 4.00758 4.19852 4.22889 4.34194 4.44373 4.67906 4.70985 4.85765 4.87158 5.13043 5.20059 5.38480 5.43773 5.49095 5.64138 5.67101 5.86028 6.00602 6.15805 6.29146 6.35757 6.93409 6.96032 7.48301 8.99403 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.020869 B = 0.009486 C = 0.007688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.353337 B = 2950.891788 C = 3641.390387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.100 4.100 5 C -0.146 4.146 6 C -0.036 4.036 7 C 0.049 3.951 8 C -0.492 4.492 9 H 0.066 0.934 10 C 0.005 3.995 11 N -0.935 5.935 12 Si 0.954 3.046 13 H -0.257 1.257 14 H -0.287 1.287 15 H -0.285 1.285 16 C -0.140 4.140 17 C 0.161 3.839 18 H 0.132 0.868 19 O -0.544 6.544 20 C 0.475 3.525 21 O -0.537 6.537 22 O -0.486 6.486 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.119 0.881 29 H 0.005 0.995 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.388 0.612 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 10.993 -1.130 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 C -0.156 4.156 4 C -0.117 4.117 5 C -0.165 4.165 6 C -0.036 4.036 7 C 0.013 3.987 8 C -0.530 4.530 9 H 0.084 0.916 10 C -0.192 4.192 11 N -0.576 5.576 12 Si 0.780 3.220 13 H -0.181 1.181 14 H -0.213 1.213 15 H -0.211 1.211 16 C -0.140 4.140 17 C 0.101 3.899 18 H 0.149 0.851 19 O -0.357 6.357 20 C 0.319 3.681 21 O -0.430 6.430 22 O -0.297 6.297 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.081 0.919 26 H 0.172 0.828 27 H 0.169 0.831 28 H 0.137 0.863 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.244 0.756 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -8.512 10.493 -0.483 13.520 hybrid contribution 0.000 -0.738 -1.487 1.660 sum -8.512 9.756 -1.969 13.096 Atomic orbital electron populations 1.21214 0.90109 1.04437 1.03666 1.19993 0.96881 0.92406 0.98795 1.21213 0.94196 0.97558 1.02612 1.21462 0.94702 0.97932 0.97647 1.21183 1.00231 0.92194 1.02847 1.20227 0.93029 0.96776 0.93583 1.18249 0.93876 0.89461 0.97153 1.21265 1.33950 1.05491 0.92294 0.91610 1.25775 0.95630 0.97202 1.00624 1.70093 1.39075 1.15794 1.32669 0.85543 0.77412 0.78196 0.80807 1.18115 1.21290 1.21077 1.19613 0.93505 0.93487 1.07440 1.20167 0.88566 0.98589 0.82604 0.85064 1.86693 1.34467 1.70807 1.43693 1.24111 0.85030 0.70732 0.88260 1.90627 1.16493 1.49243 1.86631 1.84830 1.43298 1.81885 1.19665 0.88737 0.88530 0.91883 0.82779 0.83080 0.86290 0.97642 0.97285 0.93081 0.75631 0.72016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.02 71.24 0.57 -2.67 16 2 C -0.08 -2.45 5.78 -19.87 -0.11 -2.57 16 3 C -0.14 -3.63 9.68 22.27 0.22 -3.42 16 4 C -0.10 -2.81 10.05 22.27 0.22 -2.59 16 5 C -0.15 -5.33 9.68 22.27 0.22 -5.12 16 6 C -0.04 -1.52 5.07 -19.87 -0.10 -1.62 16 7 C 0.05 2.50 4.47 29.10 0.13 2.63 16 8 C -0.49 -26.14 8.46 25.60 0.22 -25.92 16 9 H 0.07 3.45 7.03 -2.91 -0.02 3.43 16 10 C 0.00 0.26 5.46 84.66 0.46 0.73 16 11 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 12 Si 0.95 43.20 29.54 68.60 2.03 45.22 16 13 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 16 C -0.14 -5.29 4.95 -19.87 -0.10 -5.38 16 17 C 0.16 6.25 3.39 29.10 0.10 6.35 16 18 H 0.13 5.93 5.56 -2.39 -0.01 5.91 16 19 O -0.54 -19.28 12.84 -129.95 -1.67 -20.95 16 20 C 0.47 17.38 6.70 71.24 0.48 17.85 16 21 O -0.54 -19.52 15.32 28.37 0.43 -19.08 16 22 O -0.49 -17.14 12.05 -51.38 -0.62 -17.76 16 23 H 0.09 1.90 7.29 -2.39 -0.02 1.88 16 24 H 0.10 1.74 8.05 -2.39 -0.02 1.72 16 25 H 0.06 1.69 3.84 -2.39 -0.01 1.68 16 26 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 27 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 28 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.01 0.29 8.05 -2.39 -0.02 0.27 16 30 H 0.01 0.50 6.19 -2.38 -0.01 0.48 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.39 11.30 4.43 -74.06 -0.33 10.97 16 33 H 0.42 10.13 9.10 -74.06 -0.67 9.46 16 Total: -1.00 -66.63 278.10 2.92 -63.71 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.16 Total: 25.24 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 2.30 Total: -21.73 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 8 Polarization: -55.94 SS G_CDS: -1.85 Total: -57.79 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -66.63 2.92 -63.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396048191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.923 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds