Wall clock time and date at job start Mon Mar 30 2020 21:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34706 * 117.00517 * 2 1 4 4 O 1.21473 * 119.99598 * 359.97438 * 3 2 1 5 5 C 1.47721 * 120.00538 * 180.02562 * 3 2 1 6 6 C 1.39656 * 120.14578 * 269.99728 * 5 3 2 7 7 C 1.50703 * 120.07531 * 359.97438 * 6 5 3 8 8 O 1.42894 * 109.47218 * 179.97438 * 7 6 5 9 9 C 1.37915 * 119.84821 * 179.97438 * 6 5 3 10 10 C 1.38395 * 120.15163 * 359.97438 * 9 6 5 11 11 C 1.38343 * 120.30037 * 359.97438 * 10 9 6 12 12 C 1.37964 * 120.15317 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.07725 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46677 * 264.96834 * 13 12 11 15 15 H 1.07999 * 120.00128 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99905 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99529 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00072 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47150 * 60.00127 * 18 16 14 20 20 H 1.48502 * 109.47279 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47589 * 300.00065 * 18 16 14 22 22 H 1.08997 * 109.47479 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47221 * 300.00169 * 1 2 3 24 24 H 1.09001 * 109.47352 * 60.00502 * 1 2 3 25 25 H 1.09000 * 109.47300 * 299.97889 * 7 6 5 26 26 H 1.09000 * 109.46744 * 59.98282 * 7 6 5 27 27 H 0.96697 * 114.00638 * 180.02562 * 8 7 6 28 28 H 1.07999 * 119.92783 * 179.97438 * 9 6 5 29 29 H 1.07996 * 119.84860 * 179.72326 * 10 9 6 30 30 H 1.08004 * 119.92233 * 179.97438 * 11 10 9 31 31 H 1.08992 * 109.47277 * 24.96732 * 13 12 11 32 32 H 1.08996 * 109.47070 * 144.97455 * 13 12 11 33 33 H 0.97007 * 119.99475 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.2397 1.3140 1.2068 7 6 3.4927 1.2752 2.5151 8 8 4.4246 1.3232 3.5973 9 6 5.6169 1.3857 1.1991 10 6 6.3045 1.4208 -0.0014 11 6 5.6165 1.3839 -1.2011 12 6 4.2388 1.3122 -1.2080 13 6 3.4911 1.2715 -2.5158 14 6 3.0604 2.6659 -2.8917 15 1 3.3041 3.4983 -2.2482 16 6 2.3552 2.8790 -4.0572 17 7 2.0581 1.8652 -4.8406 18 14 1.8207 4.6072 -4.5229 19 1 3.0179 5.4744 -4.6643 20 1 1.0830 4.5670 -5.8110 21 1 0.9358 5.1541 -3.4632 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 2.8212 2.1317 2.5757 26 1 2.9132 0.3540 2.5754 27 1 4.0131 1.3014 4.4721 28 1 6.1602 1.4144 2.1321 29 1 7.3827 1.4815 -0.0017 30 1 6.1592 1.4121 -2.1345 31 1 4.1408 0.8699 -3.2934 32 1 2.6122 0.6354 -2.4122 33 1 1.5623 2.0151 -5.6608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396049422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:45 Heat of formation + Delta-G solvation = -117.561740 kcal Electronic energy + Delta-G solvation = -18381.917124 eV Core-core repulsion = 15372.557499 eV Total energy + Delta-G solvation = -3009.359625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18406 -38.55240 -36.66013 -35.77606 -33.52826 -31.61543 -31.38061 -27.80251 -26.97090 -25.89859 -23.74331 -22.70343 -20.26234 -19.90153 -17.66795 -17.11641 -16.56078 -16.24976 -15.80765 -15.33285 -14.90092 -14.48988 -14.33608 -14.02205 -13.31313 -12.79200 -12.60487 -12.50438 -12.05783 -11.86673 -11.65193 -11.38143 -11.15534 -10.90654 -10.57222 -10.53573 -10.35205 -10.26081 -9.94035 -9.60507 -9.48964 -8.43075 -8.34290 -7.97159 -6.05292 -4.08569 1.54343 1.92837 2.73795 3.24981 3.34848 3.37199 3.43391 4.14769 4.16867 4.47786 5.03339 5.22720 5.30060 5.34425 5.41077 5.47364 5.50748 5.54726 5.62497 5.86199 5.91523 6.06673 6.25759 6.58315 6.72534 6.83865 6.89096 6.97430 7.36397 7.47763 7.56522 7.62954 7.90489 8.24187 8.28237 8.95162 9.55546 11.04792 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.008060 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.649470 B = 3473.113633 C = 4133.631196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.525 3.475 4 O -0.484 6.484 5 C -0.108 4.108 6 C -0.061 4.061 7 C 0.113 3.887 8 O -0.565 6.565 9 C -0.125 4.125 10 C -0.103 4.103 11 C -0.125 4.125 12 C 0.005 3.995 13 C 0.043 3.957 14 C -0.509 4.509 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.097 0.903 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.380 0.620 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.038 0.962 32 H 0.030 0.970 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -4.345 12.981 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.367 3.633 4 O -0.370 6.370 5 C -0.110 4.110 6 C -0.061 4.061 7 C 0.036 3.964 8 O -0.370 6.370 9 C -0.142 4.142 10 C -0.121 4.121 11 C -0.143 4.143 12 C 0.005 3.995 13 C 0.006 3.994 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.115 0.885 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.226 0.774 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.183 -4.060 12.312 13.147 hybrid contribution -1.033 1.003 0.010 1.440 sum 1.150 -3.057 12.322 12.748 Atomic orbital electron populations 1.23209 0.77000 1.03150 1.02522 1.86637 1.22866 1.33368 1.84522 1.21152 0.89023 0.81448 0.71699 1.90834 1.66309 1.35999 1.43835 1.18615 0.88781 1.09649 0.93914 1.19439 0.94401 1.00663 0.91615 1.20919 0.90322 1.00401 0.84748 1.86435 1.36202 1.97644 1.16769 1.20640 0.92796 1.02583 0.98222 1.21283 0.99646 0.98704 0.92461 1.21070 0.93535 1.01498 0.98149 1.20654 0.93694 0.89754 0.95390 1.18477 0.95036 0.98362 0.87521 1.20936 1.35398 0.92095 1.06234 0.92316 1.24960 0.95646 0.97230 0.96198 1.69952 1.39865 1.30381 1.13169 0.86580 0.78982 0.84517 0.77616 1.20052 1.21195 1.19987 0.88495 0.92515 0.91426 0.92134 0.92164 0.77356 0.85149 0.86123 0.85341 0.94416 0.95232 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.36 -6.87 10.57 -40.51 -0.43 -7.30 16 3 C 0.52 11.43 5.02 34.61 0.17 11.61 16 4 O -0.48 -11.74 16.90 -19.25 -0.33 -12.07 16 5 C -0.11 -2.30 5.75 -104.98 -0.60 -2.90 16 6 C -0.06 -1.10 5.91 -104.21 -0.62 -1.71 16 7 C 0.11 1.65 6.46 36.01 0.23 1.88 16 8 O -0.57 -6.94 12.14 -35.23 -0.43 -7.37 16 9 C -0.12 -2.06 9.37 -39.64 -0.37 -2.43 16 10 C -0.10 -1.67 10.04 -39.48 -0.40 -2.07 16 11 C -0.12 -2.38 9.67 -39.64 -0.38 -2.76 16 12 C 0.01 0.12 5.10 -104.21 -0.53 -0.41 16 13 C 0.04 1.12 4.63 -29.03 -0.13 0.99 16 14 C -0.51 -14.70 9.09 -34.44 -0.31 -15.01 16 15 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 18 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 22 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.38 2.62 9.12 45.56 0.42 3.03 16 28 H 0.13 1.93 7.00 -52.49 -0.37 1.56 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 31 H 0.04 1.01 8.05 -51.93 -0.42 0.59 16 32 H 0.03 0.83 7.28 -51.93 -0.38 0.45 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -34.02 295.14 -6.24 -40.26 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.25 Total: 0.17 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.97 Total: -9.55 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -1.18 Total: -26.74 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.02 -6.24 -40.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396049422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.300 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds