Wall clock time and date at job start Mon Mar 30 2020 21:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34706 * 117.00517 * 2 1 4 4 O 1.21473 * 119.99598 * 359.97438 * 3 2 1 5 5 C 1.47721 * 120.00538 * 180.02562 * 3 2 1 6 6 C 1.39656 * 120.14578 * 269.99728 * 5 3 2 7 7 C 1.50703 * 120.07531 * 359.97438 * 6 5 3 8 8 O 1.42894 * 109.47218 * 179.97438 * 7 6 5 9 9 C 1.37915 * 119.84821 * 179.97438 * 6 5 3 10 10 C 1.38395 * 120.15163 * 359.97438 * 9 6 5 11 11 C 1.38343 * 120.30037 * 359.97438 * 10 9 6 12 12 C 1.37964 * 120.15317 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.07725 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46677 * 264.96834 * 13 12 11 15 15 H 1.07999 * 120.00128 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99905 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99529 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00072 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47150 * 60.00127 * 18 16 14 20 20 H 1.48502 * 109.47279 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47589 * 300.00065 * 18 16 14 22 22 H 1.08997 * 109.47479 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47221 * 300.00169 * 1 2 3 24 24 H 1.09001 * 109.47352 * 60.00502 * 1 2 3 25 25 H 1.09000 * 109.47300 * 299.97889 * 7 6 5 26 26 H 1.09000 * 109.46744 * 59.98282 * 7 6 5 27 27 H 0.96697 * 114.00638 * 180.02562 * 8 7 6 28 28 H 1.07999 * 119.92783 * 179.97438 * 9 6 5 29 29 H 1.07996 * 119.84860 * 179.72326 * 10 9 6 30 30 H 1.08004 * 119.92233 * 179.97438 * 11 10 9 31 31 H 1.08992 * 109.47277 * 24.96732 * 13 12 11 32 32 H 1.08996 * 109.47070 * 144.97455 * 13 12 11 33 33 H 0.97007 * 119.99475 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.2397 1.3140 1.2068 7 6 3.4927 1.2752 2.5151 8 8 4.4246 1.3232 3.5973 9 6 5.6169 1.3857 1.1991 10 6 6.3045 1.4208 -0.0014 11 6 5.6165 1.3839 -1.2011 12 6 4.2388 1.3122 -1.2080 13 6 3.4911 1.2715 -2.5158 14 6 3.0604 2.6659 -2.8917 15 1 3.3041 3.4983 -2.2482 16 6 2.3552 2.8790 -4.0572 17 7 2.0581 1.8652 -4.8406 18 14 1.8207 4.6072 -4.5229 19 1 3.0179 5.4744 -4.6643 20 1 1.0830 4.5670 -5.8110 21 1 0.9358 5.1541 -3.4632 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 2.8212 2.1317 2.5757 26 1 2.9132 0.3540 2.5754 27 1 4.0131 1.3014 4.4721 28 1 6.1602 1.4144 2.1321 29 1 7.3827 1.4815 -0.0017 30 1 6.1592 1.4121 -2.1345 31 1 4.1408 0.8699 -3.2934 32 1 2.6122 0.6354 -2.4122 33 1 1.5623 2.0151 -5.6608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396049422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:45 Heat of formation + Delta-G solvation = -141.012268 kcal Electronic energy + Delta-G solvation = -18382.934015 eV Core-core repulsion = 15372.557499 eV Total energy + Delta-G solvation = -3010.376517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.75544 -40.00624 -37.75036 -37.40366 -35.52278 -33.29163 -32.90175 -29.47108 -28.54812 -27.14565 -25.59434 -24.36496 -21.74449 -21.46876 -19.03577 -18.60362 -18.40978 -18.00674 -17.26971 -16.87873 -16.31022 -15.99426 -15.79379 -15.39996 -14.67164 -14.58064 -14.36565 -14.05059 -13.62202 -13.44332 -13.25998 -12.98923 -12.83581 -12.65650 -12.43203 -12.22046 -11.83013 -11.68301 -11.64229 -11.38984 -11.25706 -10.66212 -9.77891 -9.52260 -8.26960 -6.38447 0.10791 0.45132 1.06833 1.32356 1.36339 1.44079 1.79469 2.34459 2.74372 3.04117 3.12521 3.78935 3.87605 4.08149 4.15493 4.24698 4.28250 4.29870 4.37730 4.51357 4.59057 4.61903 4.86705 5.01826 5.17360 5.21290 5.25308 5.47599 5.50118 5.66633 5.78898 5.96819 6.09578 6.65658 6.70580 6.85215 7.29321 8.82624 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.008060 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.649470 B = 3473.113633 C = 4133.631196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.526 3.474 4 O -0.522 6.522 5 C -0.134 4.134 6 C -0.066 4.066 7 C 0.121 3.879 8 O -0.568 6.568 9 C -0.116 4.116 10 C -0.085 4.085 11 C -0.134 4.134 12 C -0.030 4.030 13 C 0.055 3.945 14 C -0.524 4.524 15 H 0.046 0.954 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.957 3.043 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.279 1.279 22 H 0.140 0.860 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.405 0.595 28 H 0.159 0.841 29 H 0.166 0.834 30 H 0.135 0.865 31 H 0.020 0.980 32 H -0.002 1.002 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -4.081 14.841 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.370 3.630 4 O -0.411 6.411 5 C -0.135 4.135 6 C -0.066 4.066 7 C 0.043 3.957 8 O -0.378 6.378 9 C -0.133 4.133 10 C -0.102 4.102 11 C -0.152 4.152 12 C -0.030 4.030 13 C 0.019 3.981 14 C -0.561 4.561 15 H 0.064 0.936 16 C -0.188 4.188 17 N -0.565 5.565 18 Si 0.781 3.219 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.205 1.205 22 H 0.158 0.842 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.256 0.744 28 H 0.176 0.824 29 H 0.183 0.817 30 H 0.152 0.848 31 H 0.038 0.962 32 H 0.016 0.984 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.380 -3.820 14.196 15.085 hybrid contribution -1.385 0.838 -0.460 1.683 sum 1.995 -2.982 13.737 14.197 Atomic orbital electron populations 1.23575 0.74828 1.05912 1.02269 1.86621 1.25083 1.32230 1.83861 1.21427 0.89551 0.81487 0.70525 1.90791 1.67215 1.37167 1.45889 1.18753 0.88580 1.11284 0.94872 1.19852 0.95402 0.99352 0.91998 1.20737 0.90042 1.00833 0.84064 1.86354 1.36046 1.97599 1.17754 1.21062 0.92250 1.00554 0.99458 1.21700 1.01712 0.95896 0.90921 1.21208 0.92238 1.01771 0.99987 1.20392 0.95133 0.93542 0.93946 1.18147 0.93903 0.96440 0.89649 1.21167 1.35694 0.93014 1.06265 0.93559 1.25804 0.95601 1.01256 0.96153 1.70051 1.40445 1.32364 1.13608 0.85624 0.78926 0.79853 0.77485 1.18627 1.19781 1.20464 0.84245 0.90602 0.93869 0.92550 0.90926 0.74417 0.82365 0.81684 0.84753 0.96165 0.98389 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.02 16 2 O -0.36 -14.17 10.57 -56.16 -0.59 -14.77 16 3 C 0.53 23.59 5.02 70.33 0.35 23.94 16 4 O -0.52 -26.24 16.90 19.92 0.34 -25.90 16 5 C -0.13 -5.74 5.75 -20.10 -0.12 -5.86 16 6 C -0.07 -2.27 5.91 -19.60 -0.12 -2.38 16 7 C 0.12 3.25 6.46 71.24 0.46 3.71 16 8 O -0.57 -11.87 12.14 -148.98 -1.81 -13.68 16 9 C -0.12 -3.45 9.37 22.23 0.21 -3.24 16 10 C -0.08 -2.49 10.04 22.33 0.22 -2.26 16 11 C -0.13 -5.05 9.67 22.23 0.21 -4.83 16 12 C -0.03 -1.37 5.10 -19.60 -0.10 -1.47 16 13 C 0.06 3.07 4.63 29.10 0.13 3.21 16 14 C -0.52 -31.41 9.09 25.60 0.23 -31.18 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 16 C 0.01 0.63 5.46 84.66 0.46 1.09 16 17 N -0.92 -56.83 13.29 21.45 0.28 -56.55 16 18 Si 0.96 46.65 29.54 68.60 2.03 48.68 16 19 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 22 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.40 4.04 9.12 -74.06 -0.68 3.36 16 28 H 0.16 3.89 7.00 -2.91 -0.02 3.87 16 29 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.02 1.14 8.05 -2.39 -0.02 1.13 16 32 H 0.00 -0.13 7.28 -2.39 -0.02 -0.14 16 33 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -76.31 295.14 3.85 -72.46 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.45 Total: 7.03 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 3.16 Total: -17.27 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -2.07 Total: -54.35 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -76.31 3.85 -72.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396049422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.557 kcal (2) G-P(sol) polarization free energy of solvation -76.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds