Wall clock time and date at job start Mon Mar 30 2020 21:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34708 * 117.00317 * 2 1 4 4 O 1.21470 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.47730 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.39649 * 120.15034 * 0.23406 * 5 3 2 7 7 C 1.37919 * 119.84728 * 180.25338 * 6 5 3 8 8 C 1.50706 * 119.92639 * 179.76547 * 7 6 5 9 9 O 1.42895 * 109.47147 * 269.72703 * 8 7 6 10 10 C 1.38393 * 120.15194 * 359.49231 * 7 6 5 11 11 C 1.38340 * 120.29792 * 0.27273 * 10 7 6 12 12 C 1.50707 * 119.91980 * 180.02562 * 11 10 7 13 13 C 1.50703 * 109.46715 * 90.00542 * 12 11 10 14 14 H 1.08000 * 120.00224 * 359.97438 * 13 12 11 15 15 C 1.37886 * 119.99684 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99842 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99718 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47450 * 90.00129 * 17 15 13 19 19 H 1.48497 * 109.46669 * 210.00243 * 17 15 13 20 20 H 1.48507 * 109.47209 * 329.99623 * 17 15 13 21 21 C 1.37967 * 120.15687 * 359.97438 * 11 10 7 22 22 H 1.09004 * 109.46718 * 300.00315 * 1 2 3 23 23 H 1.09000 * 109.47406 * 59.99525 * 1 2 3 24 24 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.07722 * 0.02562 * 6 5 3 26 26 H 1.09001 * 109.46953 * 29.72218 * 8 7 6 27 27 H 1.09000 * 109.47318 * 149.71816 * 8 7 6 28 28 H 0.96700 * 113.99916 * 179.97438 * 9 8 7 29 29 H 1.08001 * 119.84676 * 180.25684 * 10 7 6 30 30 H 1.08999 * 109.46869 * 209.99736 * 12 11 10 31 31 H 1.08995 * 109.47489 * 330.00303 * 12 11 10 32 32 H 0.96994 * 119.99628 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.07530 * 179.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3025 0.1082 -0.0060 7 6 5.6794 0.1876 -0.0013 8 6 6.5051 -1.0731 -0.0018 9 8 6.7670 -1.4716 1.3452 10 6 6.3045 1.4223 -0.0017 11 6 5.5541 2.5845 -0.0012 12 6 6.2437 3.9245 -0.0022 13 6 6.4720 4.3708 -1.4234 14 1 6.1503 3.7464 -2.2438 15 6 7.0916 5.5764 -1.6763 16 7 7.4828 6.3370 -0.6772 17 14 7.3738 6.1299 -3.4379 18 1 6.2036 6.9169 -3.9031 19 1 8.5945 6.9731 -3.5021 20 1 7.5480 4.9398 -4.3089 21 6 4.1760 2.5197 -0.0008 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.8159 -0.8559 -0.0103 26 1 5.9593 -1.8647 -0.5152 27 1 7.4483 -0.8895 -0.5164 28 1 7.2949 -2.2782 1.4212 29 1 7.3830 1.4787 -0.0021 30 1 5.6191 4.6549 0.5121 31 1 7.2019 3.8405 0.5106 32 1 7.9190 7.1848 -0.8552 33 1 3.5915 3.4278 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396049525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:47 Heat of formation + Delta-G solvation = -122.325367 kcal Electronic energy + Delta-G solvation = -17524.598099 eV Core-core repulsion = 14515.031907 eV Total energy + Delta-G solvation = -3009.566192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.34221 -38.83219 -36.62756 -36.16330 -33.61141 -31.62254 -31.48148 -27.92187 -27.11695 -25.73860 -23.83795 -23.22902 -20.23386 -20.00818 -17.39790 -17.32226 -16.77306 -16.33459 -16.20253 -15.61218 -15.17880 -14.62667 -14.20701 -13.68598 -13.45757 -13.35093 -12.65347 -12.52289 -12.13446 -12.09146 -11.71751 -11.42125 -11.21689 -10.94502 -10.74908 -10.65452 -10.53764 -10.25143 -10.04562 -9.66531 -9.51958 -8.55352 -8.45976 -8.04199 -6.08278 -4.12740 1.11124 1.77310 2.81878 2.85991 3.29134 3.35436 3.38794 4.09237 4.41487 4.60217 4.89101 5.07360 5.12551 5.15118 5.19719 5.27178 5.38668 5.44695 5.50097 5.76045 5.80670 5.97053 6.21470 6.40194 6.50713 6.69582 6.91977 6.96089 7.34000 7.50285 7.62935 7.69509 7.86897 7.92976 8.24470 8.91922 9.51559 11.01703 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.006276 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.633772 B = 4460.334175 C = 5626.336754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.512 3.488 4 O -0.508 6.508 5 C -0.138 4.138 6 C -0.068 4.068 7 C -0.115 4.115 8 C 0.122 3.878 9 O -0.567 6.567 10 C -0.063 4.063 11 C -0.049 4.049 12 C 0.048 3.952 13 C -0.516 4.516 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.048 4.048 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.128 0.872 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.375 0.625 29 H 0.127 0.873 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 -15.944 1.326 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.358 3.642 4 O -0.397 6.397 5 C -0.139 4.139 6 C -0.087 4.087 7 C -0.115 4.115 8 C 0.045 3.955 9 O -0.373 6.373 10 C -0.081 4.081 11 C -0.049 4.049 12 C 0.012 3.988 13 C -0.554 4.554 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.066 4.066 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.117 0.883 25 H 0.146 0.854 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.222 0.778 29 H 0.145 0.855 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.753 -14.944 1.487 16.466 hybrid contribution 0.247 -0.027 -1.146 1.172 sum -6.507 -14.971 0.342 16.328 Atomic orbital electron populations 1.23223 0.76591 1.03350 1.02552 1.86551 1.23101 1.33169 1.84713 1.21379 0.89350 0.81117 0.72366 1.90821 1.66811 1.35979 1.46066 1.18983 0.88105 0.95228 1.11548 1.21014 0.92966 0.97273 0.97421 1.19475 0.93268 0.94254 1.04473 1.20937 0.97603 0.93453 0.83489 1.86604 1.76229 1.47691 1.26739 1.21299 1.00489 0.90973 0.95307 1.20677 0.92589 0.98032 0.93566 1.18387 0.95621 0.86763 0.98055 1.21042 1.38946 1.04151 0.91277 0.92391 1.25004 0.95405 0.96448 0.97324 1.69953 1.40130 1.12219 1.30765 0.86523 0.77754 0.78724 0.84642 1.20514 1.21113 1.19794 1.21289 0.94708 0.96041 0.94558 0.91970 0.91959 0.88281 0.85432 0.92989 0.92575 0.77809 0.85495 0.94879 0.94855 0.92733 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.15 9.82 -40.51 -0.40 -5.55 16 3 C 0.51 8.93 7.90 34.61 0.27 9.21 16 4 O -0.51 -10.01 16.14 -19.24 -0.31 -10.32 16 5 C -0.14 -2.50 5.87 -104.98 -0.62 -3.12 16 6 C -0.07 -1.10 9.26 -39.17 -0.36 -1.47 16 7 C -0.11 -1.87 5.50 -104.68 -0.58 -2.44 16 8 C 0.12 1.52 7.17 36.01 0.26 1.78 16 9 O -0.57 -7.11 13.64 -35.23 -0.48 -7.59 16 10 C -0.06 -1.18 9.34 -39.49 -0.37 -1.55 16 11 C -0.05 -1.04 5.06 -104.68 -0.53 -1.57 16 12 C 0.05 1.23 5.10 -29.03 -0.15 1.08 16 13 C -0.52 -14.24 9.09 -34.44 -0.31 -14.55 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 17 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.05 -0.98 9.24 -39.17 -0.36 -1.34 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.13 1.75 7.61 -52.49 -0.40 1.35 16 26 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.38 2.61 9.12 45.56 0.42 3.02 16 29 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.14 2.86 7.65 -52.49 -0.40 2.46 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -32.63 298.55 -6.05 -38.67 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.30 Total: 0.23 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.78 Total: -10.94 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -1.19 Total: -23.45 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.63 -6.05 -38.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396049525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.651 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds