Wall clock time and date at job start Mon Mar 30 2020 21:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34708 * 117.00317 * 2 1 4 4 O 1.21470 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.47730 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.39649 * 120.15034 * 0.23406 * 5 3 2 7 7 C 1.37919 * 119.84728 * 180.25338 * 6 5 3 8 8 C 1.50706 * 119.92639 * 179.76547 * 7 6 5 9 9 O 1.42895 * 109.47147 * 269.72703 * 8 7 6 10 10 C 1.38393 * 120.15194 * 359.49231 * 7 6 5 11 11 C 1.38340 * 120.29792 * 0.27273 * 10 7 6 12 12 C 1.50707 * 119.91980 * 180.02562 * 11 10 7 13 13 C 1.50703 * 109.46715 * 90.00542 * 12 11 10 14 14 H 1.08000 * 120.00224 * 359.97438 * 13 12 11 15 15 C 1.37886 * 119.99684 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99842 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99718 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47450 * 90.00129 * 17 15 13 19 19 H 1.48497 * 109.46669 * 210.00243 * 17 15 13 20 20 H 1.48507 * 109.47209 * 329.99623 * 17 15 13 21 21 C 1.37967 * 120.15687 * 359.97438 * 11 10 7 22 22 H 1.09004 * 109.46718 * 300.00315 * 1 2 3 23 23 H 1.09000 * 109.47406 * 59.99525 * 1 2 3 24 24 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.07722 * 0.02562 * 6 5 3 26 26 H 1.09001 * 109.46953 * 29.72218 * 8 7 6 27 27 H 1.09000 * 109.47318 * 149.71816 * 8 7 6 28 28 H 0.96700 * 113.99916 * 179.97438 * 9 8 7 29 29 H 1.08001 * 119.84676 * 180.25684 * 10 7 6 30 30 H 1.08999 * 109.46869 * 209.99736 * 12 11 10 31 31 H 1.08995 * 109.47489 * 330.00303 * 12 11 10 32 32 H 0.96994 * 119.99628 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.07530 * 179.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3025 0.1082 -0.0060 7 6 5.6794 0.1876 -0.0013 8 6 6.5051 -1.0731 -0.0018 9 8 6.7670 -1.4716 1.3452 10 6 6.3045 1.4223 -0.0017 11 6 5.5541 2.5845 -0.0012 12 6 6.2437 3.9245 -0.0022 13 6 6.4720 4.3708 -1.4234 14 1 6.1503 3.7464 -2.2438 15 6 7.0916 5.5764 -1.6763 16 7 7.4828 6.3370 -0.6772 17 14 7.3738 6.1299 -3.4379 18 1 6.2036 6.9169 -3.9031 19 1 8.5945 6.9731 -3.5021 20 1 7.5480 4.9398 -4.3089 21 6 4.1760 2.5197 -0.0008 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.8159 -0.8559 -0.0103 26 1 5.9593 -1.8647 -0.5152 27 1 7.4483 -0.8895 -0.5164 28 1 7.2949 -2.2782 1.4212 29 1 7.3830 1.4787 -0.0021 30 1 5.6191 4.6549 0.5121 31 1 7.2019 3.8405 0.5106 32 1 7.9190 7.1848 -0.8552 33 1 3.5915 3.4278 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396049525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:47 Heat of formation + Delta-G solvation = -144.506333 kcal Electronic energy + Delta-G solvation = -17525.559937 eV Core-core repulsion = 14515.031907 eV Total energy + Delta-G solvation = -3010.528031 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.67103 -40.19874 -37.70021 -37.38698 -35.53665 -33.40248 -32.83519 -29.39381 -28.52039 -26.88877 -25.45051 -24.91640 -21.64437 -21.41933 -18.70891 -18.49880 -18.27513 -18.04345 -17.40949 -17.01034 -16.60036 -16.43571 -15.42593 -14.81360 -14.67872 -14.60436 -14.39611 -14.18330 -13.50428 -13.35923 -13.18662 -13.02113 -12.85052 -12.62772 -12.48165 -12.21721 -11.84459 -11.65923 -11.58232 -11.47716 -10.87826 -10.62764 -9.98059 -9.63876 -8.22768 -6.36008 -0.33110 0.34711 1.38917 1.40770 1.45660 1.52129 1.62762 2.38262 2.72968 3.09046 3.50019 3.69444 3.93156 4.07323 4.17410 4.29579 4.32258 4.33435 4.42788 4.48279 4.64422 4.69422 4.80145 5.02604 5.14588 5.22755 5.24087 5.30856 5.48845 5.70934 5.84382 5.86820 6.13350 6.62532 6.75918 7.02014 7.32808 8.87300 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.006276 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.633772 B = 4460.334175 C = 5626.336754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.517 3.483 4 O -0.539 6.539 5 C -0.142 4.142 6 C -0.050 4.050 7 C -0.108 4.108 8 C 0.125 3.875 9 O -0.588 6.588 10 C -0.068 4.068 11 C -0.074 4.074 12 C 0.057 3.943 13 C -0.532 4.532 14 H 0.057 0.943 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.966 3.034 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.066 4.066 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.142 0.858 25 H 0.164 0.836 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.401 0.599 29 H 0.130 0.870 30 H 0.002 0.998 31 H 0.014 0.986 32 H 0.266 0.734 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -19.060 0.209 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.364 3.636 4 O -0.431 6.431 5 C -0.143 4.143 6 C -0.068 4.068 7 C -0.108 4.108 8 C 0.048 3.952 9 O -0.398 6.398 10 C -0.086 4.086 11 C -0.074 4.074 12 C 0.020 3.980 13 C -0.569 4.569 14 H 0.075 0.925 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.790 3.210 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.085 4.085 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.160 0.840 25 H 0.182 0.818 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.251 0.749 29 H 0.148 0.852 30 H 0.020 0.980 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.123 -18.111 0.376 19.464 hybrid contribution 0.288 0.811 -0.725 1.125 sum -6.835 -17.300 -0.349 18.604 Atomic orbital electron populations 1.23642 0.74116 1.06169 1.02600 1.86523 1.25379 1.30931 1.83848 1.21238 0.89028 0.81643 0.71725 1.90809 1.67383 1.37293 1.47613 1.19069 0.89089 0.94938 1.11245 1.21413 0.92862 0.97782 0.94777 1.19928 0.93896 0.94951 1.02023 1.20973 0.98013 0.92219 0.84010 1.86525 1.77074 1.49584 1.26607 1.21378 1.00587 0.91294 0.95364 1.20301 0.93138 0.97058 0.96905 1.18114 0.94429 0.88711 0.96737 1.21368 1.38836 1.04514 0.92228 0.92503 1.25921 0.95005 0.96467 1.01831 1.70077 1.40938 1.12711 1.33132 0.85437 0.77810 0.78525 0.79254 1.20118 1.20276 1.18635 1.21077 0.94261 0.96667 0.96452 0.91983 0.92004 0.84021 0.81838 0.89590 0.91340 0.74852 0.85240 0.97962 0.96789 0.92483 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.35 -9.12 9.82 -56.18 -0.55 -9.67 16 3 C 0.52 17.59 7.90 70.33 0.56 18.15 16 4 O -0.54 -21.51 16.14 19.93 0.32 -21.19 16 5 C -0.14 -5.09 5.87 -20.10 -0.12 -5.21 16 6 C -0.05 -1.48 9.26 22.53 0.21 -1.28 16 7 C -0.11 -3.25 5.50 -19.90 -0.11 -3.36 16 8 C 0.12 2.59 7.17 71.24 0.51 3.10 16 9 O -0.59 -12.52 13.64 -148.98 -2.03 -14.55 16 10 C -0.07 -2.56 9.34 22.33 0.21 -2.35 16 11 C -0.07 -3.32 5.06 -19.90 -0.10 -3.42 16 12 C 0.06 3.08 5.10 29.11 0.15 3.23 16 13 C -0.53 -30.46 9.09 25.60 0.23 -30.22 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 17 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 21 C -0.07 -2.83 9.24 22.54 0.21 -2.62 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.16 3.67 7.61 -2.91 -0.02 3.64 16 26 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 27 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 28 H 0.40 3.94 9.12 -74.06 -0.68 3.26 16 29 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 30 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 31 H 0.01 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.11 5.19 7.65 -2.91 -0.02 5.17 16 Total: -1.00 -73.24 298.55 3.90 -69.34 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.45 Total: 7.07 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 3.40 Total: -21.47 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.28 Total: -55.94 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -2.26 Total: -45.41 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.24 3.90 -69.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396049525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.166 kcal (2) G-P(sol) polarization free energy of solvation -73.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds