Wall clock time and date at job start Mon Mar 30 2020 21:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38253 * 119.99941 * 2 1 4 4 C 1.50701 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.50700 * 109.47349 * 85.02208 * 4 3 2 6 6 H 1.08002 * 119.99912 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00162 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00087 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47410 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47126 * 120.00124 * 9 7 5 12 12 H 1.48504 * 109.46969 * 239.99876 * 9 7 5 13 13 C 1.38215 * 120.00294 * 180.02562 * 3 2 1 14 14 C 1.38256 * 119.99734 * 359.97438 * 13 3 2 15 15 C 1.38217 * 120.00088 * 0.02885 * 14 13 3 16 16 C 1.38212 * 120.00198 * 180.02562 * 2 1 3 17 17 C 1.50703 * 120.00209 * 359.97221 * 16 2 1 18 18 H 1.09004 * 109.46543 * 35.00474 * 17 16 2 19 19 O 1.42902 * 109.47207 * 155.00161 * 17 16 2 20 20 C 1.50695 * 109.47304 * 275.00656 * 17 16 2 21 21 O 1.20831 * 119.99665 * 244.99580 * 20 17 16 22 22 O 1.34228 * 120.00448 * 64.99500 * 20 17 16 23 23 H 1.08997 * 109.47013 * 89.99929 * 1 2 3 24 24 H 1.09005 * 109.46873 * 209.99272 * 1 2 3 25 25 H 1.08998 * 109.47033 * 329.99761 * 1 2 3 26 26 H 1.09003 * 109.47025 * 205.01724 * 4 3 2 27 27 H 1.08991 * 109.47184 * 325.01669 * 4 3 2 28 28 H 0.97000 * 120.00398 * 179.97438 * 8 7 5 29 29 H 1.07995 * 120.00164 * 179.70679 * 13 3 2 30 30 H 1.08001 * 120.00211 * 180.02562 * 14 13 3 31 31 H 1.08005 * 120.00060 * 179.97438 * 15 14 13 32 32 H 0.96694 * 113.99839 * 60.00865 * 19 17 16 33 33 H 0.96696 * 117.00385 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 1.4447 2.5024 0.0006 5 6 1.0872 2.8755 1.4162 6 1 1.3764 2.2317 2.2338 7 6 0.3902 4.0381 1.6677 8 7 0.0376 4.8219 0.6722 9 14 -0.0535 4.5002 3.4224 10 1 0.4538 3.4591 4.3519 11 1 0.5621 5.8087 3.7604 12 1 -1.5297 4.6001 3.5498 13 6 3.5804 1.1974 -0.0005 14 6 4.2717 0.0001 -0.0005 15 6 3.5806 -1.1969 -0.0006 16 6 2.1981 -1.1969 -0.0005 17 6 1.4446 -2.5021 -0.0005 18 1 0.5337 -2.3957 -0.5896 19 8 2.2638 -3.5250 -0.5704 20 6 1.0867 -2.8755 1.4149 21 8 1.5641 -3.8651 1.9177 22 8 0.2376 -2.1088 2.1171 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 2.0693 3.2828 -0.4341 27 1 0.5337 2.3962 -0.5882 28 1 -0.4532 5.6396 0.8490 29 1 4.1203 2.1327 -0.0053 30 1 5.3517 0.0000 -0.0005 31 1 4.1207 -2.1323 -0.0010 32 1 3.0931 -3.6744 -0.0963 33 1 0.0380 -2.3889 3.0208 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396050117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:52 Heat of formation + Delta-G solvation = -130.747874 kcal Electronic energy + Delta-G solvation = -18328.889323 eV Core-core repulsion = 15318.957904 eV Total energy + Delta-G solvation = -3009.931419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.69129 -39.03579 -36.96931 -35.86840 -33.60657 -32.53359 -31.49558 -28.02495 -27.10920 -26.05565 -23.29356 -22.22507 -20.59187 -19.92558 -18.27524 -17.73257 -16.62431 -16.33768 -15.94125 -15.18793 -14.94505 -14.60720 -13.89375 -13.57022 -13.39618 -13.07927 -12.48601 -12.27820 -12.10058 -11.78063 -11.55767 -11.45354 -11.36686 -11.22790 -11.01016 -10.75609 -10.61325 -10.39078 -10.02898 -9.57390 -9.45009 -8.47757 -8.20126 -7.83104 -6.09740 -4.13469 1.66269 1.96987 2.17415 2.99138 3.25187 3.33558 3.37915 4.05663 4.33144 4.46437 4.72356 4.98582 5.21346 5.25060 5.33526 5.45889 5.71720 5.91572 6.07561 6.24159 6.30625 6.37802 6.45616 6.66127 6.83581 6.90554 7.05709 7.14766 7.28349 7.43847 7.61639 7.75882 7.86188 7.86576 8.25831 8.92203 9.50656 11.00028 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.006854 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.505794 B = 4084.177324 C = 4654.645270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 C -0.036 4.036 4 C 0.048 3.952 5 C -0.508 4.508 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 C -0.112 4.112 14 C -0.128 4.128 15 C -0.130 4.130 16 C -0.140 4.140 17 C 0.169 3.831 18 H 0.145 0.855 19 O -0.528 6.528 20 C 0.460 3.540 21 O -0.519 6.519 22 O -0.497 6.497 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.383 0.617 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -11.673 -0.720 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.055 4.055 3 C -0.036 4.036 4 C 0.011 3.989 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 C -0.130 4.130 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.141 4.141 17 C 0.108 3.892 18 H 0.162 0.838 19 O -0.335 6.335 20 C 0.302 3.698 21 O -0.408 6.408 22 O -0.308 6.308 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.233 0.767 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.363 -11.692 -1.443 12.015 hybrid contribution 0.189 0.227 2.039 2.060 sum 2.552 -11.465 0.596 11.761 Atomic orbital electron populations 1.21033 0.91087 1.04705 1.01659 1.19569 0.96360 0.91263 0.98323 1.20610 0.93506 0.96797 0.92655 1.18384 0.95087 0.87556 0.97891 1.21034 1.35566 1.06250 0.91793 0.92451 1.24993 0.95821 0.96298 0.97099 1.69959 1.39194 1.13251 1.30767 0.86517 0.78172 0.78437 0.84827 1.19697 1.20979 1.20909 1.21193 0.94394 0.97602 0.99809 1.20939 0.99151 0.92445 1.02035 1.20532 0.92977 0.97823 1.03507 1.19707 0.94043 0.93047 1.07284 1.20229 0.95800 0.85819 0.87343 0.83825 1.86648 1.35516 1.56587 1.54745 1.24509 0.75274 0.80049 0.89994 1.90700 1.51956 1.27146 1.71019 1.84660 1.60092 1.54530 1.31507 0.92004 0.91425 0.88490 0.95447 0.94747 0.92853 0.86186 0.86708 0.87095 0.76709 0.73402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.36 36.00 0.30 -1.91 16 2 C -0.06 -1.01 5.88 -104.63 -0.62 -1.63 16 3 C -0.04 -0.74 5.07 -104.62 -0.53 -1.27 16 4 C 0.05 1.16 4.42 -29.03 -0.13 1.03 16 5 C -0.51 -13.53 8.32 -34.44 -0.29 -13.81 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C -0.11 -2.09 9.68 -39.58 -0.38 -2.47 16 14 C -0.13 -2.03 10.05 -39.58 -0.40 -2.42 16 15 C -0.13 -1.98 9.30 -39.58 -0.37 -2.35 16 16 C -0.14 -2.25 5.04 -104.62 -0.53 -2.78 16 17 C 0.17 2.34 3.08 -29.04 -0.09 2.25 16 18 H 0.14 1.81 6.99 -51.93 -0.36 1.44 16 19 O -0.53 -7.03 12.65 -55.14 -0.70 -7.73 16 20 C 0.46 6.54 7.60 36.00 0.27 6.82 16 21 O -0.52 -8.38 17.08 -25.47 -0.44 -8.82 16 22 O -0.50 -6.32 11.13 -39.25 -0.44 -6.75 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 1.01 4.45 -51.93 -0.23 0.78 16 25 H 0.10 1.96 6.16 -51.93 -0.32 1.64 16 26 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 27 H 0.03 0.87 6.99 -51.93 -0.36 0.51 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.35 6.41 -52.48 -0.34 1.02 16 32 H 0.38 4.21 7.07 45.56 0.32 4.53 16 33 H 0.41 3.43 9.10 45.56 0.41 3.84 16 LS Contribution 282.79 15.07 4.26 4.26 Total: -1.00 -31.38 282.79 -6.54 -37.93 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.10 Total: 6.98 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.85 Total: -17.02 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.74 Total: -24.72 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.57 Total: -23.30 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.38 -6.54 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396050117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.820 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds