Wall clock time and date at job start Mon Mar 30 2020 21:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00446 * 2 1 4 4 C 1.50701 * 119.99804 * 0.06518 * 3 2 1 5 5 C 1.50701 * 109.47002 * 85.16573 * 4 3 2 6 6 H 1.08000 * 120.00432 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99800 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00308 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00193 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46819 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47149 * 120.00059 * 9 7 5 12 12 H 1.48493 * 109.47358 * 240.00208 * 9 7 5 13 13 C 1.38210 * 120.00037 * 180.23077 * 3 2 1 14 14 C 1.38256 * 120.00345 * 359.81016 * 13 3 2 15 15 C 1.38216 * 119.99829 * 359.97438 * 14 13 3 16 16 C 1.38216 * 119.99632 * 179.79010 * 2 1 3 17 17 C 1.50698 * 120.00384 * 359.97438 * 16 2 1 18 18 H 1.09007 * 109.46580 * 324.72604 * 17 16 2 19 19 O 1.42898 * 109.47409 * 204.72900 * 17 16 2 20 20 C 1.50696 * 109.47300 * 84.72119 * 17 16 2 21 21 O 1.20833 * 119.99655 * 114.99969 * 20 17 16 22 22 O 1.34231 * 120.00640 * 295.28240 * 20 17 16 23 23 H 1.08997 * 109.47066 * 270.21419 * 1 2 3 24 24 H 1.09000 * 109.46603 * 30.21001 * 1 2 3 25 25 H 1.08998 * 109.47069 * 150.20951 * 1 2 3 26 26 H 1.08995 * 109.46854 * 205.16230 * 4 3 2 27 27 H 1.08997 * 109.47376 * 325.16384 * 4 3 2 28 28 H 0.96996 * 120.00599 * 179.97438 * 8 7 5 29 29 H 1.08000 * 120.00169 * 179.83929 * 13 3 2 30 30 H 1.07995 * 120.00465 * 180.02562 * 14 13 3 31 31 H 1.07996 * 120.00281 * 179.97438 * 15 14 13 32 32 H 0.96697 * 113.99769 * 299.99772 * 19 17 16 33 33 H 0.96693 * 117.00337 * 179.72181 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 1.4449 2.5024 0.0015 5 6 1.0915 2.8768 1.4178 6 1 1.3829 2.2337 2.2351 7 6 0.3961 4.0402 1.6702 8 7 0.0417 4.8236 0.6751 9 14 -0.0427 4.5040 3.4258 10 1 0.4671 3.4636 4.3547 11 1 0.5750 5.8122 3.7613 12 1 -1.5184 4.6052 3.5570 13 6 3.5805 1.1972 -0.0048 14 6 4.2718 -0.0002 -0.0057 15 6 3.5806 -1.1971 -0.0012 16 6 2.1980 -1.1970 0.0044 17 6 1.4445 -2.5021 0.0097 18 1 0.5365 -2.3948 0.6032 19 8 2.2663 -3.5243 0.5770 20 6 1.0796 -2.8773 -1.4034 21 8 1.5545 -3.8675 -1.9073 22 8 0.2315 -2.1085 -2.1043 23 1 -0.3633 0.0038 1.0276 24 1 -0.3632 0.8881 -0.5171 25 1 -0.3633 -0.8918 -0.5106 26 1 2.0684 3.2823 -0.4356 27 1 0.5322 2.3957 -0.5847 28 1 -0.4479 5.6419 0.8526 29 1 4.1206 2.1324 -0.0074 30 1 5.3517 -0.0003 -0.0090 31 1 4.1205 -2.1325 -0.0023 32 1 3.0934 -3.6744 0.0991 33 1 0.0307 -2.3874 -3.0081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396050120.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:54 Heat of formation + Delta-G solvation = -129.165071 kcal Electronic energy + Delta-G solvation = -18247.967694 eV Core-core repulsion = 15238.104910 eV Total energy + Delta-G solvation = -3009.862784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.73214 -39.05300 -36.99438 -35.91600 -33.59192 -32.54763 -31.49861 -28.03873 -27.11436 -26.04990 -23.32175 -22.26143 -20.60342 -19.92090 -18.31798 -17.76759 -16.62584 -16.33785 -16.00795 -15.21509 -14.96342 -14.59799 -13.93328 -13.58074 -13.32663 -13.15404 -12.46440 -12.33833 -12.09422 -11.84980 -11.62429 -11.46740 -11.38495 -11.19826 -10.98212 -10.71769 -10.64717 -10.38774 -10.03705 -9.56774 -9.43564 -8.45908 -8.19930 -7.84110 -6.08796 -4.12319 1.65390 1.97101 2.12905 2.94061 3.26377 3.34702 3.39412 4.05649 4.33489 4.46670 4.72209 4.98004 5.18074 5.26299 5.33852 5.45441 5.70222 5.90206 6.06445 6.28561 6.32386 6.34609 6.39499 6.65630 6.82729 6.84136 7.05134 7.09534 7.27751 7.44015 7.62501 7.76939 7.80686 7.87502 8.26714 8.92953 9.51823 11.01110 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.006049 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.816876 B = 4628.093998 C = 4888.568852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.056 4.056 3 C -0.036 4.036 4 C 0.047 3.953 5 C -0.508 4.508 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 C -0.111 4.111 14 C -0.128 4.128 15 C -0.130 4.130 16 C -0.140 4.140 17 C 0.169 3.831 18 H 0.145 0.855 19 O -0.527 6.527 20 C 0.460 3.540 21 O -0.518 6.518 22 O -0.499 6.499 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.382 0.618 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -11.756 -3.781 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.056 4.056 3 C -0.036 4.036 4 C 0.010 3.990 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 C -0.129 4.129 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.141 4.141 17 C 0.108 3.892 18 H 0.163 0.837 19 O -0.334 6.334 20 C 0.302 3.698 21 O -0.407 6.407 22 O -0.310 6.310 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.232 0.768 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.389 -11.777 -3.130 12.418 hybrid contribution 0.178 0.246 -0.049 0.308 sum 2.567 -11.531 -3.180 12.234 Atomic orbital electron populations 1.20948 0.91011 1.03139 1.02534 1.19566 0.96365 0.91289 0.98357 1.20591 0.93509 0.96808 0.92709 1.18409 0.95084 0.87542 0.97925 1.21037 1.35595 1.06236 0.91749 0.92469 1.24988 0.95799 0.96300 0.97124 1.69956 1.39291 1.13249 1.30788 0.86515 0.78160 0.78457 0.84821 1.19660 1.20974 1.20915 1.21190 0.94383 0.97609 0.99758 1.20937 0.99154 0.92442 1.02057 1.20532 0.92972 0.97828 1.03477 1.19692 0.94032 0.92999 1.07327 1.20245 0.95815 0.85844 0.87315 0.83749 1.86664 1.35584 1.56593 1.54535 1.24553 0.75178 0.80084 0.89952 1.90704 1.52009 1.27106 1.70877 1.84655 1.60327 1.54549 1.31506 0.91016 0.89979 0.91726 0.95502 0.94574 0.92872 0.86182 0.86700 0.87087 0.76752 0.73508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.73 36.01 0.31 -1.74 16 2 C -0.06 -1.02 5.88 -104.62 -0.62 -1.64 16 3 C -0.04 -0.75 5.07 -104.63 -0.53 -1.28 16 4 C 0.05 1.15 4.61 -29.03 -0.13 1.01 16 5 C -0.51 -13.60 9.09 -34.44 -0.31 -13.91 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 C -0.11 -2.08 9.68 -39.58 -0.38 -2.46 16 14 C -0.13 -2.03 10.05 -39.58 -0.40 -2.42 16 15 C -0.13 -1.97 9.30 -39.58 -0.37 -2.34 16 16 C -0.14 -2.24 5.04 -104.62 -0.53 -2.77 16 17 C 0.17 2.33 3.08 -29.04 -0.09 2.24 16 18 H 0.15 1.86 7.01 -51.93 -0.36 1.49 16 19 O -0.53 -7.10 12.64 -55.14 -0.70 -7.79 16 20 C 0.46 6.23 7.60 36.00 0.27 6.50 16 21 O -0.52 -8.03 17.08 -25.47 -0.44 -8.46 16 22 O -0.50 -5.71 11.08 -39.26 -0.44 -6.15 16 23 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.08 1.55 6.03 -51.93 -0.31 1.24 16 25 H 0.06 0.92 4.42 -51.93 -0.23 0.70 16 26 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 27 H 0.04 0.92 6.16 -51.93 -0.32 0.60 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.35 6.41 -52.49 -0.34 1.01 16 32 H 0.38 4.19 7.07 45.56 0.32 4.51 16 33 H 0.41 2.82 9.10 45.56 0.41 3.24 16 LS Contribution 283.10 15.07 4.27 4.27 Total: -1.00 -31.57 283.10 -6.51 -38.08 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -2.05 Total: 6.20 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.87 Total: -17.29 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.74 Total: -24.83 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -1.57 Total: -22.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.57 -6.51 -38.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396050120.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.088 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds