Wall clock time and date at job start Mon Mar 30 2020 21:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00446 * 2 1 4 4 C 1.50701 * 119.99804 * 0.06518 * 3 2 1 5 5 C 1.50701 * 109.47002 * 85.16573 * 4 3 2 6 6 H 1.08000 * 120.00432 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99800 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00308 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00193 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46819 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47149 * 120.00059 * 9 7 5 12 12 H 1.48493 * 109.47358 * 240.00208 * 9 7 5 13 13 C 1.38210 * 120.00037 * 180.23077 * 3 2 1 14 14 C 1.38256 * 120.00345 * 359.81016 * 13 3 2 15 15 C 1.38216 * 119.99829 * 359.97438 * 14 13 3 16 16 C 1.38216 * 119.99632 * 179.79010 * 2 1 3 17 17 C 1.50698 * 120.00384 * 359.97438 * 16 2 1 18 18 H 1.09007 * 109.46580 * 324.72604 * 17 16 2 19 19 O 1.42898 * 109.47409 * 204.72900 * 17 16 2 20 20 C 1.50696 * 109.47300 * 84.72119 * 17 16 2 21 21 O 1.20833 * 119.99655 * 114.99969 * 20 17 16 22 22 O 1.34231 * 120.00640 * 295.28240 * 20 17 16 23 23 H 1.08997 * 109.47066 * 270.21419 * 1 2 3 24 24 H 1.09000 * 109.46603 * 30.21001 * 1 2 3 25 25 H 1.08998 * 109.47069 * 150.20951 * 1 2 3 26 26 H 1.08995 * 109.46854 * 205.16230 * 4 3 2 27 27 H 1.08997 * 109.47376 * 325.16384 * 4 3 2 28 28 H 0.96996 * 120.00599 * 179.97438 * 8 7 5 29 29 H 1.08000 * 120.00169 * 179.83929 * 13 3 2 30 30 H 1.07995 * 120.00465 * 180.02562 * 14 13 3 31 31 H 1.07996 * 120.00281 * 179.97438 * 15 14 13 32 32 H 0.96697 * 113.99769 * 299.99772 * 19 17 16 33 33 H 0.96693 * 117.00337 * 179.72181 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 1.4449 2.5024 0.0015 5 6 1.0915 2.8768 1.4178 6 1 1.3829 2.2337 2.2351 7 6 0.3961 4.0402 1.6702 8 7 0.0417 4.8236 0.6751 9 14 -0.0427 4.5040 3.4258 10 1 0.4671 3.4636 4.3547 11 1 0.5750 5.8122 3.7613 12 1 -1.5184 4.6052 3.5570 13 6 3.5805 1.1972 -0.0048 14 6 4.2718 -0.0002 -0.0057 15 6 3.5806 -1.1971 -0.0012 16 6 2.1980 -1.1970 0.0044 17 6 1.4445 -2.5021 0.0097 18 1 0.5365 -2.3948 0.6032 19 8 2.2663 -3.5243 0.5770 20 6 1.0796 -2.8773 -1.4034 21 8 1.5545 -3.8675 -1.9073 22 8 0.2315 -2.1085 -2.1043 23 1 -0.3633 0.0038 1.0276 24 1 -0.3632 0.8881 -0.5171 25 1 -0.3633 -0.8918 -0.5106 26 1 2.0684 3.2823 -0.4356 27 1 0.5322 2.3957 -0.5847 28 1 -0.4479 5.6419 0.8526 29 1 4.1206 2.1324 -0.0074 30 1 5.3517 -0.0003 -0.0090 31 1 4.1205 -2.1325 -0.0023 32 1 3.0934 -3.6744 0.0991 33 1 0.0307 -2.3874 -3.0081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396050120.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:53 Heat of formation + Delta-G solvation = -150.407761 kcal Electronic energy + Delta-G solvation = -18248.888846 eV Core-core repulsion = 15238.104910 eV Total energy + Delta-G solvation = -3010.783936 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83467 -40.33013 -38.06764 -36.98328 -35.43380 -33.92086 -33.13191 -29.54346 -28.55549 -27.46837 -25.17725 -23.41624 -21.84547 -21.36542 -19.34245 -18.84052 -18.47523 -17.79359 -17.17454 -16.50464 -16.41909 -16.22116 -15.13766 -14.83466 -14.75723 -14.45433 -14.13731 -13.81645 -13.42318 -13.40640 -12.98214 -12.90838 -12.64429 -12.63533 -12.49970 -12.40068 -12.22942 -11.91850 -11.46517 -11.35023 -11.10822 -10.56545 -9.54048 -9.31406 -8.17734 -6.29214 0.34650 0.60625 1.05217 1.39820 1.41668 1.53817 1.97019 2.41039 2.85783 3.13869 3.24149 3.53570 3.90697 4.11237 4.17188 4.24893 4.29773 4.53367 4.72165 4.90922 4.94467 4.98724 5.20610 5.29388 5.40880 5.46749 5.53979 5.55026 5.68776 5.79540 6.08706 6.12844 6.26776 6.38598 6.83214 6.90755 7.38910 8.91818 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.006049 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.816876 B = 4628.093998 C = 4888.568852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 C -0.071 4.071 4 C 0.058 3.942 5 C -0.517 4.517 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.276 1.276 13 C -0.128 4.128 14 C -0.121 4.121 15 C -0.123 4.123 16 C -0.135 4.135 17 C 0.172 3.828 18 H 0.154 0.846 19 O -0.531 6.531 20 C 0.468 3.532 21 O -0.538 6.538 22 O -0.500 6.500 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.093 0.907 26 H -0.003 1.003 27 H 0.016 0.984 28 H 0.264 0.736 29 H 0.115 0.885 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.394 0.606 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 -13.809 -3.083 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.068 4.068 3 C -0.071 4.071 4 C 0.021 3.979 5 C -0.555 4.555 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.202 1.202 13 C -0.146 4.146 14 C -0.139 4.139 15 C -0.140 4.140 16 C -0.136 4.136 17 C 0.111 3.889 18 H 0.171 0.829 19 O -0.339 6.339 20 C 0.311 3.689 21 O -0.428 6.428 22 O -0.314 6.314 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.015 0.985 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.246 0.754 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 3.104 -13.836 -2.452 14.390 hybrid contribution 0.000 0.823 -0.340 0.890 sum 3.104 -13.013 -2.792 13.666 Atomic orbital electron populations 1.20884 0.90739 1.03188 1.02195 1.19638 0.96789 0.91483 0.98874 1.20335 0.94479 0.95811 0.96480 1.18121 0.94189 0.89196 0.96394 1.21302 1.35249 1.06196 0.92711 0.93026 1.25823 0.95756 0.96300 1.01169 1.70072 1.40205 1.13789 1.32945 0.85492 0.78077 0.78162 0.79920 1.19051 1.20513 1.20188 1.21270 0.93705 0.98981 1.00629 1.21267 1.00858 0.91358 1.00380 1.21037 0.92809 0.99187 1.00989 1.19895 0.94734 0.93024 1.05925 1.20192 0.95988 0.84776 0.87928 0.82858 1.86664 1.36295 1.56060 1.54844 1.24357 0.75044 0.79729 0.89741 1.90705 1.52918 1.27966 1.71250 1.84586 1.59603 1.54152 1.33058 0.91526 0.92681 0.88860 0.98463 0.96553 0.92683 0.86724 0.83282 0.83237 0.75431 0.71058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.92 8.73 71.24 0.62 -3.30 16 2 C -0.07 -2.47 5.88 -19.86 -0.12 -2.58 16 3 C -0.07 -3.01 5.07 -19.87 -0.10 -3.12 16 4 C 0.06 2.98 4.61 29.10 0.13 3.11 16 5 C -0.52 -28.56 9.09 25.60 0.23 -28.33 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 7 C 0.01 0.42 5.46 84.65 0.46 0.89 16 8 N -0.93 -54.84 13.29 21.45 0.28 -54.55 16 9 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 C -0.13 -4.75 9.68 22.27 0.22 -4.54 16 14 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 15 C -0.12 -3.28 9.30 22.27 0.21 -3.07 16 16 C -0.14 -4.01 5.04 -19.86 -0.10 -4.11 16 17 C 0.17 4.25 3.08 29.10 0.09 4.34 16 18 H 0.15 3.52 7.01 -2.38 -0.02 3.51 16 19 O -0.53 -12.39 12.64 -129.95 -1.64 -14.03 16 20 C 0.47 11.38 7.60 71.23 0.54 11.92 16 21 O -0.54 -15.15 17.08 28.36 0.48 -14.67 16 22 O -0.50 -10.25 11.08 -51.42 -0.57 -10.82 16 23 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.05 2.17 6.03 -2.39 -0.01 2.16 16 25 H 0.09 2.56 4.42 -2.39 -0.01 2.55 16 26 H 0.00 -0.17 8.05 -2.39 -0.02 -0.19 16 27 H 0.02 0.89 6.16 -2.39 -0.01 0.88 16 28 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 30 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 31 H 0.15 2.85 6.41 -2.91 -0.02 2.83 16 32 H 0.39 6.99 7.07 -74.06 -0.52 6.47 16 33 H 0.43 4.85 9.10 -74.06 -0.67 4.18 16 Total: -1.00 -68.91 283.10 2.96 -65.95 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -0.03 Total: 14.61 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 2.41 Total: -32.07 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.28 Total: -54.55 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.73 Total: -39.51 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.91 2.96 -65.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396050120.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.457 kcal (2) G-P(sol) polarization free energy of solvation -68.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds