Wall clock time and date at job start Mon Mar 30 2020 21:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47003 * 269.99906 * 3 2 1 5 5 H 1.48492 * 109.47449 * 30.00403 * 3 2 1 6 6 H 1.48507 * 109.46599 * 150.00372 * 3 2 1 7 7 C 1.37872 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.38255 * 119.99858 * 265.23375 * 10 9 7 12 12 C 1.38214 * 120.00168 * 180.27290 * 11 10 9 13 13 C 1.50692 * 120.00486 * 179.72234 * 12 11 10 14 14 C 1.50693 * 109.47442 * 270.02151 * 13 12 11 15 15 O 1.20829 * 119.99570 * 359.97438 * 14 13 12 16 16 O 1.34230 * 120.00648 * 179.97438 * 14 13 12 17 17 C 1.38266 * 119.99754 * 359.74145 * 12 11 10 18 18 C 1.38212 * 119.99638 * 0.02562 * 17 12 11 19 19 C 1.38211 * 120.00115 * 84.99565 * 10 9 7 20 20 C 1.50703 * 119.99896 * 0.02562 * 19 10 9 21 21 O 1.42898 * 109.47171 * 179.72743 * 20 19 10 22 22 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47279 * 59.99891 * 9 7 2 24 24 H 1.09002 * 109.47436 * 299.99522 * 9 7 2 25 25 H 1.08006 * 120.00479 * 359.97438 * 11 10 9 26 26 H 1.09002 * 109.47279 * 30.02228 * 13 12 11 27 27 H 1.09003 * 109.47181 * 150.02265 * 13 12 11 28 28 H 0.96695 * 117.00550 * 179.97438 * 16 14 13 29 29 H 1.07994 * 119.99874 * 179.97438 * 17 12 11 30 30 H 1.08009 * 119.99753 * 179.97438 * 18 17 12 31 31 H 1.09002 * 109.47152 * 59.72527 * 20 19 10 32 32 H 1.09001 * 109.46980 * 299.72627 * 20 19 10 33 33 H 0.96701 * 113.99881 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.6038 -4.2336 -1.1965 12 6 3.4976 -5.2879 -1.1970 13 6 3.9000 -5.9340 -2.4976 14 6 2.9541 -7.0645 -2.8107 15 8 2.0465 -7.3197 -2.0549 16 8 3.1196 -7.7881 -3.9291 17 6 4.0222 -5.7500 -0.0041 18 6 3.6525 -5.1580 1.1888 19 6 2.7587 -4.1032 1.1892 20 6 2.3552 -3.4580 2.4900 21 8 3.0258 -4.1073 3.5720 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.1936 -3.8731 -2.1283 26 1 3.8606 -5.1951 -3.2979 27 1 4.9147 -6.3227 -2.4115 28 1 2.4882 -8.5032 -4.0869 29 1 4.7203 -6.5741 -0.0045 30 1 4.0620 -5.5193 2.1207 31 1 1.2772 -3.5507 2.6226 32 1 2.6297 -2.4032 2.4729 33 1 2.8126 -3.7432 4.4421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396056963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:09 Heat of formation + Delta-G solvation = -134.302425 kcal Electronic energy + Delta-G solvation = -17767.574334 eV Core-core repulsion = 14757.488778 eV Total energy + Delta-G solvation = -3010.085556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26339 -38.92813 -36.36005 -35.92420 -33.86241 -32.50195 -31.03959 -28.77418 -27.20249 -24.78827 -23.32916 -21.80911 -21.10448 -19.18239 -18.02242 -16.98242 -16.42671 -16.38329 -15.83141 -15.53323 -14.66650 -14.37847 -14.30067 -13.97668 -13.24758 -13.01541 -12.53262 -12.36403 -12.20979 -11.77402 -11.46682 -11.41352 -11.33661 -10.92744 -10.81463 -10.49100 -10.46265 -10.19747 -9.78309 -9.55378 -9.42879 -8.46876 -8.03589 -7.70791 -6.09066 -4.13459 1.83645 2.16922 2.30569 3.20202 3.26642 3.33522 3.37235 4.34200 4.51071 4.68840 4.84746 5.11518 5.25284 5.47619 5.51513 5.55754 5.69830 5.81605 6.03076 6.19422 6.27732 6.39315 6.50749 6.64907 6.77379 7.00020 7.11653 7.23820 7.46480 7.70350 7.79130 7.86734 7.96035 8.04352 8.26450 8.92193 9.50710 11.00536 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.006329 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.705612 B = 4423.120240 C = 5299.002613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.046 3.954 10 C -0.032 4.032 11 C -0.105 4.105 12 C -0.091 4.091 13 C -0.065 4.065 14 C 0.475 3.525 15 O -0.501 6.501 16 O -0.524 6.524 17 C -0.132 4.132 18 C -0.101 4.101 19 C -0.086 4.086 20 C 0.119 3.881 21 O -0.580 6.580 22 H 0.262 0.738 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.406 0.594 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -10.962 -1.981 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.032 4.032 11 C -0.124 4.124 12 C -0.092 4.092 13 C -0.103 4.103 14 C 0.316 3.684 15 O -0.387 6.387 16 O -0.336 6.336 17 C -0.150 4.150 18 C -0.119 4.119 19 C -0.087 4.087 20 C 0.043 3.957 21 O -0.385 6.385 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.265 0.735 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.971 -10.943 -2.187 13.158 hybrid contribution -0.292 0.817 0.231 0.898 sum 6.679 -10.126 -1.956 12.287 Atomic orbital electron populations 1.69961 1.06032 1.26867 1.50301 1.25006 0.94850 0.99206 0.95151 0.86561 0.79847 0.83205 0.78273 1.20552 1.21165 1.19768 1.21019 0.93024 0.89702 1.51204 0.92414 1.18373 0.92568 0.89554 0.98532 1.20354 0.96336 0.95492 0.90989 1.20798 0.97526 0.95841 0.98189 1.19105 0.99824 0.97579 0.92652 1.20223 0.98130 0.94053 0.97867 1.23622 0.84646 0.82337 0.77747 1.90765 1.32170 1.67333 1.48450 1.84540 1.58532 1.46929 1.43606 1.20683 1.01762 1.00459 0.92130 1.20799 0.97608 0.95984 0.97460 1.19559 0.98373 0.96811 0.93914 1.20959 0.95185 0.95911 0.83690 1.86366 1.71772 1.62788 1.17557 0.92792 0.95314 0.95119 0.86448 0.86934 0.87253 0.73546 0.87245 0.85880 0.92434 0.90657 0.77842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.87 8.76 -34.44 -0.30 -14.17 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.05 1.18 4.61 -29.03 -0.13 1.05 16 10 C -0.03 -0.70 5.07 -104.62 -0.53 -1.23 16 11 C -0.11 -2.11 9.34 -39.58 -0.37 -2.48 16 12 C -0.09 -1.56 4.37 -104.62 -0.46 -2.02 16 13 C -0.07 -0.83 5.94 -29.04 -0.17 -1.00 16 14 C 0.47 6.45 8.32 36.00 0.30 6.75 16 15 O -0.50 -8.86 16.79 -18.75 -0.31 -9.18 16 16 O -0.52 -5.31 13.42 -39.26 -0.53 -5.84 16 17 C -0.13 -2.25 9.70 -39.58 -0.38 -2.63 16 18 C -0.10 -1.88 9.38 -39.58 -0.37 -2.25 16 19 C -0.09 -1.79 5.88 -104.62 -0.62 -2.40 16 20 C 0.12 2.26 6.23 36.01 0.22 2.49 16 21 O -0.58 -9.40 12.14 -35.23 -0.43 -9.82 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 24 H 0.03 0.81 6.83 -51.93 -0.35 0.45 16 25 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 26 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 27 H 0.11 1.08 8.09 -51.93 -0.42 0.66 16 28 H 0.41 2.46 9.10 45.56 0.41 2.88 16 29 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.12 2.16 7.01 -52.48 -0.37 1.79 16 31 H 0.06 1.08 7.49 -51.93 -0.39 0.69 16 32 H 0.08 1.52 7.80 -51.93 -0.41 1.12 16 33 H 0.38 4.17 9.12 45.56 0.42 4.59 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -33.46 293.30 -6.37 -39.84 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.33 Total: 5.98 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.91 Total: -16.37 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -1.27 Total: -24.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.46 -6.37 -39.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.466 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds