Wall clock time and date at job start Mon Mar 30 2020 21:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47003 * 269.99906 * 3 2 1 5 5 H 1.48492 * 109.47449 * 30.00403 * 3 2 1 6 6 H 1.48507 * 109.46599 * 150.00372 * 3 2 1 7 7 C 1.37872 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.38255 * 119.99858 * 265.23375 * 10 9 7 12 12 C 1.38214 * 120.00168 * 180.27290 * 11 10 9 13 13 C 1.50692 * 120.00486 * 179.72234 * 12 11 10 14 14 C 1.50693 * 109.47442 * 270.02151 * 13 12 11 15 15 O 1.20829 * 119.99570 * 359.97438 * 14 13 12 16 16 O 1.34230 * 120.00648 * 179.97438 * 14 13 12 17 17 C 1.38266 * 119.99754 * 359.74145 * 12 11 10 18 18 C 1.38212 * 119.99638 * 0.02562 * 17 12 11 19 19 C 1.38211 * 120.00115 * 84.99565 * 10 9 7 20 20 C 1.50703 * 119.99896 * 0.02562 * 19 10 9 21 21 O 1.42898 * 109.47171 * 179.72743 * 20 19 10 22 22 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47279 * 59.99891 * 9 7 2 24 24 H 1.09002 * 109.47436 * 299.99522 * 9 7 2 25 25 H 1.08006 * 120.00479 * 359.97438 * 11 10 9 26 26 H 1.09002 * 109.47279 * 30.02228 * 13 12 11 27 27 H 1.09003 * 109.47181 * 150.02265 * 13 12 11 28 28 H 0.96695 * 117.00550 * 179.97438 * 16 14 13 29 29 H 1.07994 * 119.99874 * 179.97438 * 17 12 11 30 30 H 1.08009 * 119.99753 * 179.97438 * 18 17 12 31 31 H 1.09002 * 109.47152 * 59.72527 * 20 19 10 32 32 H 1.09001 * 109.46980 * 299.72627 * 20 19 10 33 33 H 0.96701 * 113.99881 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.6038 -4.2336 -1.1965 12 6 3.4976 -5.2879 -1.1970 13 6 3.9000 -5.9340 -2.4976 14 6 2.9541 -7.0645 -2.8107 15 8 2.0465 -7.3197 -2.0549 16 8 3.1196 -7.7881 -3.9291 17 6 4.0222 -5.7500 -0.0041 18 6 3.6525 -5.1580 1.1888 19 6 2.7587 -4.1032 1.1892 20 6 2.3552 -3.4580 2.4900 21 8 3.0258 -4.1073 3.5720 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.1936 -3.8731 -2.1283 26 1 3.8606 -5.1951 -3.2979 27 1 4.9147 -6.3227 -2.4115 28 1 2.4882 -8.5032 -4.0869 29 1 4.7203 -6.5741 -0.0045 30 1 4.0620 -5.5193 2.1207 31 1 1.2772 -3.5507 2.6226 32 1 2.6297 -2.4032 2.4729 33 1 2.8126 -3.7432 4.4421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396056963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:09 Heat of formation + Delta-G solvation = -158.440830 kcal Electronic energy + Delta-G solvation = -17768.621054 eV Core-core repulsion = 14757.488778 eV Total energy + Delta-G solvation = -3011.132276 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.37846 -40.32850 -37.63205 -36.99913 -35.67418 -34.09275 -32.69552 -30.05857 -29.06766 -26.20967 -25.22371 -22.96460 -22.62885 -20.62227 -19.02202 -18.51931 -18.34706 -17.48661 -16.97385 -16.86685 -16.53267 -15.82811 -15.79667 -15.45469 -14.51513 -14.45377 -14.09576 -14.04030 -13.51152 -13.30875 -13.05281 -12.86644 -12.66086 -12.61137 -12.46086 -12.22964 -11.80384 -11.63934 -11.50899 -11.23459 -11.16919 -10.59727 -9.53921 -9.26418 -8.19890 -6.32942 0.41157 0.65531 1.28505 1.40622 1.40776 1.52434 2.22745 2.40343 3.02671 3.11036 3.35973 3.67196 4.01023 4.18116 4.21747 4.38843 4.54919 4.56124 4.61800 4.66769 4.70608 4.92974 5.12323 5.20415 5.36397 5.40380 5.60879 5.67431 5.67650 5.76334 6.03380 6.12454 6.26297 6.78758 6.90423 7.06500 7.35529 8.89476 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.006329 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.705612 B = 4423.120240 C = 5299.002613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.058 3.942 10 C -0.063 4.063 11 C -0.123 4.123 12 C -0.084 4.084 13 C -0.065 4.065 14 C 0.485 3.515 15 O -0.551 6.551 16 O -0.510 6.510 17 C -0.125 4.125 18 C -0.104 4.104 19 C -0.109 4.109 20 C 0.130 3.870 21 O -0.578 6.578 22 H 0.265 0.735 23 H -0.002 1.002 24 H 0.009 0.991 25 H 0.114 0.886 26 H 0.131 0.869 27 H 0.149 0.851 28 H 0.426 0.574 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.331 -12.001 -2.617 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.064 4.064 11 C -0.141 4.141 12 C -0.084 4.084 13 C -0.102 4.102 14 C 0.329 3.671 15 O -0.442 6.442 16 O -0.324 6.324 17 C -0.142 4.142 18 C -0.122 4.122 19 C -0.109 4.109 20 C 0.053 3.947 21 O -0.386 6.386 22 H 0.074 0.926 23 H 0.017 0.983 24 H 0.027 0.973 25 H 0.132 0.868 26 H 0.149 0.851 27 H 0.167 0.833 28 H 0.287 0.713 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 9.456 -12.003 -2.832 15.540 hybrid contribution -1.038 1.008 0.389 1.498 sum 8.419 -10.995 -2.443 14.061 Atomic orbital electron populations 1.70086 1.07672 1.27914 1.51294 1.25874 0.95657 1.02900 0.94609 0.85484 0.78671 0.78605 0.78557 1.19809 1.20571 1.18928 1.21249 0.92902 0.90784 1.50864 0.92770 1.18086 0.92765 0.91076 0.95911 1.20148 0.97415 0.95839 0.92952 1.20914 0.98735 0.97203 0.97224 1.19462 0.97797 0.96022 0.95088 1.20325 0.99726 0.94222 0.95927 1.23657 0.83651 0.82182 0.77655 1.90770 1.34227 1.68878 1.50277 1.84484 1.58907 1.47231 1.41739 1.21176 1.01303 1.00529 0.91241 1.21033 0.96953 0.95276 0.98964 1.19738 0.99360 0.98010 0.93760 1.20638 0.94786 0.94849 0.84417 1.86307 1.71359 1.62617 1.18337 0.92586 0.98317 0.97304 0.86829 0.85080 0.83286 0.71258 0.83268 0.84536 0.93306 0.92641 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.52 -29.21 8.76 25.60 0.22 -28.99 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.06 3.15 4.61 29.10 0.13 3.29 16 10 C -0.06 -2.92 5.07 -19.87 -0.10 -3.02 16 11 C -0.12 -4.95 9.34 22.27 0.21 -4.75 16 12 C -0.08 -2.68 4.37 -19.87 -0.09 -2.77 16 13 C -0.07 -1.42 5.94 29.10 0.17 -1.24 16 14 C 0.48 11.79 8.32 71.23 0.59 12.38 16 15 O -0.55 -18.74 16.79 21.95 0.37 -18.37 16 16 O -0.51 -8.55 13.42 -51.42 -0.69 -9.24 16 17 C -0.12 -3.87 9.70 22.27 0.22 -3.66 16 18 C -0.10 -3.74 9.38 22.27 0.21 -3.53 16 19 C -0.11 -4.56 5.88 -19.87 -0.12 -4.67 16 20 C 0.13 5.09 6.23 71.24 0.44 5.53 16 21 O -0.58 -18.27 12.14 -148.98 -1.81 -20.08 16 22 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 23 H 0.00 -0.09 8.05 -2.39 -0.02 -0.11 16 24 H 0.01 0.50 6.83 -2.39 -0.02 0.48 16 25 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 26 H 0.13 2.43 8.09 -2.39 -0.02 2.41 16 27 H 0.15 2.11 8.09 -2.39 -0.02 2.10 16 28 H 0.43 3.82 9.10 -74.06 -0.67 3.15 16 29 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.14 4.47 7.01 -2.91 -0.02 4.45 16 31 H 0.05 1.95 7.49 -2.39 -0.02 1.93 16 32 H 0.06 2.35 7.80 -2.39 -0.02 2.33 16 33 H 0.40 8.38 9.12 -74.06 -0.68 7.71 16 Total: -1.00 -74.48 293.30 2.34 -72.14 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.20 Total: 15.61 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 2.36 Total: -30.53 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.28 Total: -55.12 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -2.13 Total: -47.69 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.48 2.34 -72.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.302 kcal (2) G-P(sol) polarization free energy of solvation -74.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds