Wall clock time and date at job start Mon Mar 30 2020 21:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46905 * 111.00149 * 2 1 4 4 C 1.50701 * 109.47529 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.55374 * 94.99806 * 4 3 2 6 6 C 1.38536 * 119.21932 * 179.97438 * 5 4 3 7 7 C 1.39135 * 118.37545 * 0.02562 * 6 5 4 8 8 O 1.35913 * 120.47459 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99828 * 354.64198 * 8 7 6 10 10 H 1.08996 * 109.47149 * 325.25329 * 9 8 7 11 11 C 1.52999 * 109.47244 * 85.25589 * 9 8 7 12 12 C 1.53002 * 109.46814 * 205.25239 * 9 8 7 13 13 C 1.50702 * 109.47102 * 65.00199 * 12 9 8 14 14 H 1.08003 * 119.99929 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00460 * 179.97438 * 13 12 9 16 16 N 1.31523 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00442 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47130 * 89.99906 * 17 15 13 19 19 H 1.48501 * 109.47619 * 209.99671 * 17 15 13 20 20 H 1.48503 * 109.47216 * 330.00199 * 17 15 13 21 21 C 1.38709 * 119.05260 * 359.97438 * 7 6 5 22 22 N 1.31840 * 120.68437 * 359.74732 * 21 7 6 23 23 H 1.09005 * 109.47493 * 300.00210 * 1 2 3 24 24 H 1.09008 * 109.47185 * 59.99619 * 1 2 3 25 25 H 1.08996 * 109.47602 * 179.97438 * 1 2 3 26 26 H 1.00897 * 111.00675 * 123.95692 * 2 1 3 27 27 H 1.09003 * 109.47058 * 59.99932 * 3 2 1 28 28 H 1.08999 * 109.47252 * 300.00720 * 3 2 1 29 29 H 1.07999 * 120.39610 * 359.96115 * 5 4 3 30 30 H 1.08000 * 120.81018 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47285 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.47038 * 300.00048 * 11 9 8 33 33 H 1.09003 * 109.46983 * 59.99503 * 11 9 8 34 34 H 1.08996 * 109.46937 * 184.99781 * 12 9 8 35 35 H 1.09002 * 109.47307 * 305.00083 * 12 9 8 36 36 H 0.96990 * 120.00324 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.65757 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3313 0.0006 5 6 4.1869 1.4177 -1.1972 6 6 5.5717 1.3807 -1.1885 7 6 6.2222 1.2565 0.0352 8 8 7.5794 1.2153 0.0932 9 6 8.2814 1.1859 -1.1512 10 1 7.7069 0.6129 -1.8789 11 6 8.4721 2.6151 -1.6630 12 6 9.6488 0.5296 -0.9499 13 6 9.4607 -0.9150 -0.5641 14 1 8.4654 -1.3240 -0.4712 15 6 10.5591 -1.7146 -0.3296 16 7 11.7712 -1.2167 -0.4431 17 14 10.3260 -3.5050 0.1494 18 1 10.2874 -4.3440 -1.0753 19 1 11.4555 -3.9382 1.0106 20 1 9.0498 -3.6562 0.8935 21 6 5.4657 1.1753 1.1950 22 7 4.1490 1.2198 1.1439 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8306 -0.5261 0.7813 27 1 1.6459 1.8948 0.8900 28 1 1.6458 1.8949 -0.8899 29 1 3.6488 1.5128 -2.1287 30 1 6.1326 1.4466 -2.1090 31 1 9.0079 2.5927 -2.6120 32 1 7.4980 3.0826 -1.8063 33 1 9.0465 3.1881 -0.9352 34 1 10.2191 0.5867 -1.8770 35 1 10.1886 1.0497 -0.1586 36 1 12.5440 -1.7793 -0.2785 37 1 5.9605 1.0783 2.1501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695786803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:06 Heat of formation + Delta-G solvation = -13.393612 kcal Electronic energy + Delta-G solvation = -17844.044258 eV Core-core repulsion = 15007.327547 eV Total energy + Delta-G solvation = -2836.716711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38835 -38.22907 -35.93756 -33.57571 -32.04255 -31.74919 -30.51836 -27.54668 -26.76521 -24.08932 -23.44917 -23.20696 -21.85156 -19.98160 -17.81250 -16.78674 -16.45365 -16.23251 -15.24267 -14.98913 -14.63135 -14.49798 -14.19611 -13.96725 -13.39100 -13.05684 -12.93952 -12.37178 -12.23318 -11.97253 -11.89825 -11.72429 -11.52600 -11.45604 -11.11241 -10.77768 -10.49850 -10.18166 -9.59470 -9.39265 -9.35563 -9.16256 -8.64629 -8.42019 -7.89632 -6.05114 -4.07011 1.38275 1.49899 3.31240 3.37766 3.42968 3.70200 3.88537 4.33723 4.43932 4.58672 4.77634 4.97873 5.14352 5.21604 5.23917 5.31845 5.34617 5.48399 5.58104 5.61888 5.66125 5.67181 5.84219 5.96439 6.09045 6.25691 6.36580 6.54270 6.64932 6.67176 6.79677 7.17269 7.41455 7.51645 7.90909 7.93995 8.20790 8.31144 8.96506 9.56970 11.06233 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.004965 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.744230 B = 5638.013479 C = 6415.992905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.691 5.691 3 C 0.120 3.880 4 C 0.062 3.938 5 C -0.108 4.108 6 C -0.176 4.176 7 C 0.108 3.892 8 O -0.283 6.283 9 C 0.085 3.915 10 H 0.063 0.937 11 C -0.177 4.177 12 C 0.026 3.974 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.063 3.937 22 N -0.446 5.446 23 H 0.021 0.979 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.348 0.652 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.914 6.473 -1.358 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.009 4.009 4 C -0.075 4.075 5 C -0.128 4.128 6 C -0.203 4.203 7 C 0.058 3.942 8 O -0.194 6.194 9 C 0.029 3.971 10 H 0.081 0.919 11 C -0.235 4.235 12 C -0.011 4.011 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.097 4.097 22 N -0.156 5.156 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.166 0.834 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.010 6.313 -1.098 18.177 hybrid contribution 0.332 -0.700 0.089 0.780 sum -16.678 5.613 -1.009 17.626 Atomic orbital electron populations 1.22194 0.87723 1.01934 1.00305 1.60431 1.07484 1.13670 1.50695 1.20639 0.88774 0.90217 1.01282 1.20730 0.95621 1.02483 0.88714 1.21672 0.93701 0.98541 0.98893 1.21826 0.95278 1.04988 0.98178 1.20374 0.85640 0.93544 0.94692 1.86311 1.12793 1.85739 1.34527 1.22949 0.96272 0.94943 0.82935 0.91917 1.22412 1.01334 0.97706 1.02028 1.19275 0.87810 0.95510 0.98498 1.21107 0.92700 0.94848 1.46798 0.92628 1.24969 0.95178 0.98695 0.95407 1.69945 0.97667 1.36217 1.49715 0.86577 0.77883 0.84985 0.78534 1.20649 1.21129 1.19773 1.22093 0.88169 1.02106 0.97320 1.67389 1.08789 1.10385 1.29043 0.96009 0.91738 0.91369 0.83398 0.93734 0.89910 0.85107 0.84119 0.91188 0.93418 0.91754 0.94253 0.95167 0.92881 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.06 0.64 0.88 16 2 N -0.69 -7.72 6.84 -122.42 -0.84 -8.56 16 3 C 0.12 1.36 5.99 -4.97 -0.03 1.33 16 4 C 0.06 0.89 6.29 -82.58 -0.52 0.37 16 5 C -0.11 -1.49 9.71 -39.47 -0.38 -1.88 16 6 C -0.18 -2.77 8.36 -39.14 -0.33 -3.09 16 7 C 0.11 1.93 6.62 -39.07 -0.26 1.68 16 8 O -0.28 -5.85 9.56 -19.47 -0.19 -6.04 16 9 C 0.08 1.70 2.17 -26.73 -0.06 1.64 16 10 H 0.06 1.23 6.33 -51.93 -0.33 0.90 16 11 C -0.18 -2.89 9.20 37.16 0.34 -2.55 16 12 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 13 C -0.52 -14.44 8.88 -34.44 -0.31 -14.75 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 21 C 0.06 1.06 11.14 -17.37 -0.19 0.87 16 22 N -0.45 -7.12 10.27 -9.35 -0.10 -7.22 16 23 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.35 4.06 8.81 -39.29 -0.35 3.71 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 29 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.14 2.05 5.61 -52.49 -0.29 1.75 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.68 6.98 -51.93 -0.36 0.32 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 313.08 15.07 4.72 4.72 Total: -1.00 -30.49 313.08 -7.52 -38.02 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.52 Total: 1.49 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.32 Total: -13.42 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.20 Total: -41.54 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.19 Total: -6.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.49 -7.52 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.625 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds