Wall clock time and date at job start Mon Mar 30 2020 21:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46905 * 111.00149 * 2 1 4 4 C 1.50701 * 109.47529 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.55374 * 94.99806 * 4 3 2 6 6 C 1.38536 * 119.21932 * 179.97438 * 5 4 3 7 7 C 1.39135 * 118.37545 * 0.02562 * 6 5 4 8 8 O 1.35913 * 120.47459 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99828 * 354.64198 * 8 7 6 10 10 H 1.08996 * 109.47149 * 325.25329 * 9 8 7 11 11 C 1.52999 * 109.47244 * 85.25589 * 9 8 7 12 12 C 1.53002 * 109.46814 * 205.25239 * 9 8 7 13 13 C 1.50702 * 109.47102 * 65.00199 * 12 9 8 14 14 H 1.08003 * 119.99929 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00460 * 179.97438 * 13 12 9 16 16 N 1.31523 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00442 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47130 * 89.99906 * 17 15 13 19 19 H 1.48501 * 109.47619 * 209.99671 * 17 15 13 20 20 H 1.48503 * 109.47216 * 330.00199 * 17 15 13 21 21 C 1.38709 * 119.05260 * 359.97438 * 7 6 5 22 22 N 1.31840 * 120.68437 * 359.74732 * 21 7 6 23 23 H 1.09005 * 109.47493 * 300.00210 * 1 2 3 24 24 H 1.09008 * 109.47185 * 59.99619 * 1 2 3 25 25 H 1.08996 * 109.47602 * 179.97438 * 1 2 3 26 26 H 1.00897 * 111.00675 * 123.95692 * 2 1 3 27 27 H 1.09003 * 109.47058 * 59.99932 * 3 2 1 28 28 H 1.08999 * 109.47252 * 300.00720 * 3 2 1 29 29 H 1.07999 * 120.39610 * 359.96115 * 5 4 3 30 30 H 1.08000 * 120.81018 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47285 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.47038 * 300.00048 * 11 9 8 33 33 H 1.09003 * 109.46983 * 59.99503 * 11 9 8 34 34 H 1.08996 * 109.46937 * 184.99781 * 12 9 8 35 35 H 1.09002 * 109.47307 * 305.00083 * 12 9 8 36 36 H 0.96990 * 120.00324 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.65757 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3313 0.0006 5 6 4.1869 1.4177 -1.1972 6 6 5.5717 1.3807 -1.1885 7 6 6.2222 1.2565 0.0352 8 8 7.5794 1.2153 0.0932 9 6 8.2814 1.1859 -1.1512 10 1 7.7069 0.6129 -1.8789 11 6 8.4721 2.6151 -1.6630 12 6 9.6488 0.5296 -0.9499 13 6 9.4607 -0.9150 -0.5641 14 1 8.4654 -1.3240 -0.4712 15 6 10.5591 -1.7146 -0.3296 16 7 11.7712 -1.2167 -0.4431 17 14 10.3260 -3.5050 0.1494 18 1 10.2874 -4.3440 -1.0753 19 1 11.4555 -3.9382 1.0106 20 1 9.0498 -3.6562 0.8935 21 6 5.4657 1.1753 1.1950 22 7 4.1490 1.2198 1.1439 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8306 -0.5261 0.7813 27 1 1.6459 1.8948 0.8900 28 1 1.6458 1.8949 -0.8899 29 1 3.6488 1.5128 -2.1287 30 1 6.1326 1.4466 -2.1090 31 1 9.0079 2.5927 -2.6120 32 1 7.4980 3.0826 -1.8063 33 1 9.0465 3.1881 -0.9352 34 1 10.2191 0.5867 -1.8770 35 1 10.1886 1.0497 -0.1586 36 1 12.5440 -1.7793 -0.2785 37 1 5.9605 1.0783 2.1501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695786803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:05 Heat of formation + Delta-G solvation = -34.197114 kcal Electronic energy + Delta-G solvation = -17844.946366 eV Core-core repulsion = 15007.327547 eV Total energy + Delta-G solvation = -2837.618818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.65760 -39.59974 -36.83832 -35.49186 -33.56412 -33.17331 -31.68580 -29.40689 -27.74274 -25.36066 -25.01455 -24.37053 -23.11644 -21.47961 -19.21015 -18.54266 -17.89337 -17.48834 -16.54980 -16.33931 -16.11132 -15.63115 -15.40378 -15.12668 -14.79504 -14.27055 -14.21331 -13.83253 -13.71255 -13.36052 -13.25519 -12.98234 -12.80461 -12.68599 -12.62891 -12.47983 -12.27679 -11.91877 -11.35564 -11.15911 -10.66376 -10.63257 -10.53480 -9.49358 -9.17476 -8.22693 -6.31677 0.18266 0.27264 1.37544 1.38919 1.50019 2.31026 2.39104 2.72287 3.12038 3.33436 3.58073 3.71908 3.79588 3.98304 4.12892 4.19196 4.24033 4.41783 4.47519 4.61964 4.64583 4.72802 4.75769 4.80070 4.96393 5.06772 5.12488 5.18214 5.20671 5.32849 5.42217 5.60903 5.74870 5.99868 6.16323 6.31503 6.51296 6.80023 6.98829 7.36220 8.88948 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.004965 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.744230 B = 5638.013479 C = 6415.992905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.704 5.704 3 C 0.123 3.877 4 C 0.065 3.935 5 C -0.103 4.103 6 C -0.174 4.174 7 C 0.078 3.922 8 O -0.312 6.312 9 C 0.092 3.908 10 H 0.068 0.932 11 C -0.167 4.167 12 C 0.028 3.972 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.272 1.272 21 C 0.048 3.952 22 N -0.457 5.457 23 H 0.027 0.973 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.342 0.658 27 H 0.046 0.954 28 H 0.107 0.893 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.000 1.000 36 H 0.265 0.735 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.281 6.347 -2.378 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.335 5.335 3 C -0.006 4.006 4 C -0.073 4.073 5 C -0.123 4.123 6 C -0.201 4.201 7 C 0.029 3.971 8 O -0.224 6.224 9 C 0.037 3.963 10 H 0.086 0.914 11 C -0.224 4.224 12 C -0.009 4.009 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.197 1.197 21 C -0.110 4.110 22 N -0.167 5.167 23 H 0.046 0.954 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.159 0.841 27 H 0.064 0.936 28 H 0.125 0.875 29 H 0.184 0.816 30 H 0.170 0.830 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.394 6.195 -2.117 20.469 hybrid contribution 0.937 -0.642 0.411 1.208 sum -18.457 5.553 -1.706 19.350 Atomic orbital electron populations 1.22258 0.85957 1.02728 1.01116 1.60474 1.09179 1.13321 1.50488 1.20727 0.86595 0.90723 1.02581 1.21364 0.97257 1.00318 0.88386 1.22049 0.92980 0.97042 1.00207 1.22029 0.96259 1.04152 0.97616 1.20542 0.84497 0.95931 0.96105 1.86223 1.14589 1.86959 1.34673 1.22666 0.93622 0.96908 0.83137 0.91401 1.22313 1.02832 0.95093 1.02199 1.19124 0.90628 0.94491 0.96638 1.21449 0.92466 0.96467 1.46673 0.93218 1.25816 0.94906 1.03104 0.95377 1.70053 0.98422 1.37855 1.50648 0.85562 0.77787 0.79861 0.78566 1.19399 1.20498 1.19673 1.22164 0.88746 1.02713 0.97342 1.67456 1.08156 1.10951 1.30173 0.95397 0.90633 0.90678 0.84129 0.93559 0.87511 0.81644 0.82984 0.89773 0.90956 0.92433 0.95412 0.98163 0.92636 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 127.69 1.37 1.76 16 2 N -0.70 -13.91 6.84 -541.22 -3.70 -17.61 16 3 C 0.12 2.41 5.99 85.56 0.51 2.92 16 4 C 0.07 1.71 6.29 42.56 0.27 1.98 16 5 C -0.10 -2.54 9.71 22.34 0.22 -2.33 16 6 C -0.17 -5.15 8.36 22.56 0.19 -4.96 16 7 C 0.08 2.80 6.62 22.60 0.15 2.95 16 8 O -0.31 -13.18 9.56 -92.57 -0.89 -14.07 16 9 C 0.09 3.73 2.17 30.59 0.07 3.80 16 10 H 0.07 2.63 6.33 -2.39 -0.02 2.61 16 11 C -0.17 -5.29 9.20 71.98 0.66 -4.62 16 12 C 0.03 1.45 4.68 29.85 0.14 1.59 16 13 C -0.53 -30.44 8.88 25.60 0.23 -30.22 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 17 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 C 0.05 1.65 11.14 84.80 0.94 2.60 16 22 N -0.46 -14.20 10.27 -183.49 -1.88 -16.08 16 23 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 24 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.34 7.39 8.81 -89.70 -0.79 6.60 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.11 1.60 8.04 -2.39 -0.02 1.58 16 29 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.15 4.07 5.61 -2.91 -0.02 4.05 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.07 1.92 6.98 -2.39 -0.02 1.91 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.26 15.00 8.31 -92.72 -0.77 14.23 16 37 H 0.16 5.24 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -66.26 313.08 1.31 -64.95 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.27 Total: 15.20 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 5.20 Total: -23.72 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -5.30 Total: -89.41 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.89 Total: -14.07 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.26 1.31 -64.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.753 kcal (2) G-P(sol) polarization free energy of solvation -66.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds