Wall clock time and date at job start Mon Mar 30 2020 21:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35685 * 116.99899 * 2 1 4 4 N 1.32274 * 119.68253 * 0.02562 * 3 2 1 5 5 C 1.31933 * 121.64675 * 179.97438 * 4 3 2 6 6 C 1.38092 * 120.83184 * 0.02562 * 5 4 3 7 7 C 1.38781 * 119.29152 * 359.97438 * 6 5 4 8 8 C 1.38424 * 118.48251 * 359.75185 * 7 6 5 9 9 C 1.50700 * 120.44376 * 180.24595 * 8 7 6 10 10 N 1.46897 * 109.47263 * 260.24854 * 9 8 7 11 11 C 1.46901 * 111.00209 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46550 * 325.00374 * 11 10 9 13 13 C 1.52997 * 109.46822 * 85.00415 * 11 10 9 14 14 C 1.53000 * 109.46736 * 205.00356 * 11 10 9 15 15 C 1.50693 * 109.47451 * 65.00479 * 14 11 10 16 16 H 1.08002 * 120.00344 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00364 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99648 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00218 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47123 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.46858 * 120.00027 * 19 17 15 22 22 H 1.48508 * 109.46856 * 239.99948 * 19 17 15 23 23 H 1.08998 * 109.47043 * 300.00136 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99735 * 1 2 3 25 25 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.58317 * 179.97438 * 5 4 3 27 27 H 1.08002 * 120.35679 * 180.02562 * 6 5 4 28 28 H 1.07999 * 120.76131 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.47262 * 20.25457 * 9 8 7 30 30 H 1.09004 * 109.46976 * 140.25212 * 9 8 7 31 31 H 1.00907 * 110.99472 * 56.04861 * 10 9 8 32 32 H 1.09000 * 109.47143 * 299.99649 * 13 11 10 33 33 H 1.09000 * 109.47103 * 60.00015 * 13 11 10 34 34 H 1.09001 * 109.46769 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.46354 * 185.00244 * 14 11 10 36 36 H 1.09000 * 109.47337 * 304.99651 * 14 11 10 37 37 H 0.97008 * 120.00398 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 7 1.3184 2.3143 0.0005 5 6 1.8767 3.5097 0.0010 6 6 3.2506 3.6492 0.0005 7 6 4.0483 2.5136 0.0000 8 6 3.4322 1.2740 0.0053 9 6 4.2558 0.0120 0.0105 10 7 4.3269 -0.5321 -1.3521 11 6 5.1244 -1.7653 -1.3858 12 1 5.9397 -1.6904 -0.6663 13 6 4.2352 -2.9575 -1.0268 14 6 5.6995 -1.9625 -2.7898 15 6 6.6706 -0.8514 -3.0955 16 1 6.8585 -0.0813 -2.3619 17 6 7.3193 -0.8179 -4.3117 18 7 7.0909 -1.7559 -5.2047 19 14 8.5225 0.5598 -4.6908 20 1 8.6009 1.4820 -3.5297 21 1 9.8651 -0.0154 -4.9584 22 1 8.0573 1.3081 -5.8863 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.2514 4.3902 0.0010 27 1 3.6995 4.6315 0.0014 28 1 5.1253 2.5950 0.0000 29 1 5.2618 0.2360 0.3652 30 1 3.7927 -0.7214 0.6708 31 1 4.6934 0.1528 -1.9962 32 1 3.8255 -2.8170 -0.0265 33 1 3.4198 -3.0323 -1.7463 34 1 4.8271 -3.8725 -1.0513 35 1 6.2166 -2.9208 -2.8392 36 1 4.8899 -1.9485 -3.5194 37 1 7.5476 -1.7326 -6.0603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:11 Heat of formation + Delta-G solvation = -12.753635 kcal Electronic energy + Delta-G solvation = -18255.090950 eV Core-core repulsion = 15418.401990 eV Total energy + Delta-G solvation = -2836.688959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53483 -37.68636 -36.63632 -33.52101 -32.30674 -31.14323 -29.26359 -27.34962 -27.14438 -25.05910 -22.96880 -22.83518 -21.46979 -19.37430 -18.19845 -16.98766 -16.33313 -15.85161 -15.57387 -14.99122 -14.56387 -14.30963 -14.15759 -13.65275 -13.22896 -13.14189 -12.75812 -12.41892 -11.91824 -11.76408 -11.54348 -11.39171 -11.21371 -11.08326 -10.83952 -10.66923 -10.50597 -10.17035 -9.69578 -9.56656 -9.19090 -9.03626 -8.39641 -8.25564 -7.56869 -6.01934 -4.04811 1.23394 1.39964 3.28435 3.28604 3.36424 3.38640 3.86396 4.38205 4.43264 4.88375 4.99529 5.08646 5.25871 5.30554 5.37555 5.40422 5.42796 5.58981 5.68647 5.83261 5.99607 6.11938 6.19107 6.29424 6.38041 6.38511 6.53914 6.60312 6.99091 7.00944 7.40884 7.55707 7.65771 7.94256 7.98535 8.10193 8.31509 8.39442 9.01464 9.59100 11.09076 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.006108 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.608597 B = 4582.981487 C = 5474.779673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.288 6.288 3 C 0.339 3.661 4 N -0.547 5.547 5 C 0.130 3.870 6 C -0.214 4.214 7 C -0.040 4.040 8 C -0.142 4.142 9 C 0.110 3.890 10 N -0.673 5.673 11 C 0.089 3.911 12 H 0.028 0.972 13 C -0.133 4.133 14 C 0.020 3.980 15 C -0.522 4.522 16 H 0.051 0.949 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.154 0.846 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.353 0.647 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.026 0.974 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 7.550 11.772 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.194 6.194 3 C 0.160 3.840 4 N -0.271 5.271 5 C -0.026 4.026 6 C -0.234 4.234 7 C -0.066 4.066 8 C -0.145 4.145 9 C -0.020 4.020 10 N -0.307 5.307 11 C -0.020 4.020 12 H 0.046 0.954 13 C -0.191 4.191 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.172 0.828 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.168 6.778 11.636 17.494 hybrid contribution 2.254 1.402 -0.281 2.669 sum -8.914 8.180 11.354 16.592 Atomic orbital electron populations 1.22805 0.78106 1.02686 1.01856 1.86382 1.21937 1.23972 1.87106 1.19619 0.88861 0.84531 0.91025 1.67312 1.40980 0.98871 1.19918 1.22292 0.92842 0.93577 0.93892 1.21903 0.94909 0.99576 1.07013 1.21427 1.00700 0.90947 0.93484 1.20000 0.91550 0.96725 1.06242 1.20668 0.95820 0.91879 0.93593 1.60587 1.57034 1.08084 1.04968 1.21615 0.91941 0.88481 1.00009 0.95354 1.21770 0.99903 0.97468 0.99988 1.19285 0.95625 0.97077 0.89742 1.21203 1.24485 1.10066 1.00269 0.93029 1.24991 0.96895 0.95897 0.96371 1.69971 1.42768 1.33310 1.06925 0.86589 0.81115 0.82308 0.78281 1.19877 1.21054 1.20995 0.92901 0.92515 0.88861 0.82836 0.84850 0.84337 0.94990 0.90531 0.82667 0.94393 0.92658 0.93487 0.96019 0.95597 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 101.05 1.05 1.54 16 2 O -0.29 -4.58 9.73 -18.76 -0.18 -4.77 16 3 C 0.34 5.43 7.47 -17.12 -0.13 5.30 16 4 N -0.55 -8.03 9.22 -13.33 -0.12 -8.15 16 5 C 0.13 1.57 11.18 -17.56 -0.20 1.37 16 6 C -0.21 -2.49 10.11 -39.43 -0.40 -2.88 16 7 C -0.04 -0.54 9.81 -39.31 -0.39 -0.92 16 8 C -0.14 -2.23 5.42 -104.32 -0.57 -2.80 16 9 C 0.11 1.86 5.30 -4.98 -0.03 1.83 16 10 N -0.67 -13.43 6.30 -107.99 -0.68 -14.11 16 11 C 0.09 1.88 2.59 -67.71 -0.18 1.70 16 12 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 13 C -0.13 -2.48 9.41 37.16 0.35 -2.13 16 14 C 0.02 0.52 4.57 -27.89 -0.13 0.39 16 15 C -0.52 -14.35 8.12 -34.44 -0.28 -14.63 16 16 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 24 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.03 0.52 7.95 -51.93 -0.41 0.11 16 30 H 0.08 1.28 7.16 -51.93 -0.37 0.90 16 31 H 0.35 7.66 7.20 -39.29 -0.28 7.37 16 32 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -31.00 313.66 -7.14 -38.14 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.61 Total: 3.30 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.98 Total: -9.63 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.07 Total: -48.14 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.18 Total: -4.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.00 -7.14 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.382 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds