Wall clock time and date at job start Mon Mar 30 2020 21:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35685 * 116.99899 * 2 1 4 4 N 1.32274 * 119.68253 * 0.02562 * 3 2 1 5 5 C 1.31933 * 121.64675 * 179.97438 * 4 3 2 6 6 C 1.38092 * 120.83184 * 0.02562 * 5 4 3 7 7 C 1.38781 * 119.29152 * 359.97438 * 6 5 4 8 8 C 1.38424 * 118.48251 * 359.75185 * 7 6 5 9 9 C 1.50700 * 120.44376 * 180.24595 * 8 7 6 10 10 N 1.46897 * 109.47263 * 260.24854 * 9 8 7 11 11 C 1.46901 * 111.00209 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46550 * 325.00374 * 11 10 9 13 13 C 1.52997 * 109.46822 * 85.00415 * 11 10 9 14 14 C 1.53000 * 109.46736 * 205.00356 * 11 10 9 15 15 C 1.50693 * 109.47451 * 65.00479 * 14 11 10 16 16 H 1.08002 * 120.00344 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00364 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99648 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00218 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47123 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.46858 * 120.00027 * 19 17 15 22 22 H 1.48508 * 109.46856 * 239.99948 * 19 17 15 23 23 H 1.08998 * 109.47043 * 300.00136 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99735 * 1 2 3 25 25 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.58317 * 179.97438 * 5 4 3 27 27 H 1.08002 * 120.35679 * 180.02562 * 6 5 4 28 28 H 1.07999 * 120.76131 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.47262 * 20.25457 * 9 8 7 30 30 H 1.09004 * 109.46976 * 140.25212 * 9 8 7 31 31 H 1.00907 * 110.99472 * 56.04861 * 10 9 8 32 32 H 1.09000 * 109.47143 * 299.99649 * 13 11 10 33 33 H 1.09000 * 109.47103 * 60.00015 * 13 11 10 34 34 H 1.09001 * 109.46769 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.46354 * 185.00244 * 14 11 10 36 36 H 1.09000 * 109.47337 * 304.99651 * 14 11 10 37 37 H 0.97008 * 120.00398 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 7 1.3184 2.3143 0.0005 5 6 1.8767 3.5097 0.0010 6 6 3.2506 3.6492 0.0005 7 6 4.0483 2.5136 0.0000 8 6 3.4322 1.2740 0.0053 9 6 4.2558 0.0120 0.0105 10 7 4.3269 -0.5321 -1.3521 11 6 5.1244 -1.7653 -1.3858 12 1 5.9397 -1.6904 -0.6663 13 6 4.2352 -2.9575 -1.0268 14 6 5.6995 -1.9625 -2.7898 15 6 6.6706 -0.8514 -3.0955 16 1 6.8585 -0.0813 -2.3619 17 6 7.3193 -0.8179 -4.3117 18 7 7.0909 -1.7559 -5.2047 19 14 8.5225 0.5598 -4.6908 20 1 8.6009 1.4820 -3.5297 21 1 9.8651 -0.0154 -4.9584 22 1 8.0573 1.3081 -5.8863 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.2514 4.3902 0.0010 27 1 3.6995 4.6315 0.0014 28 1 5.1253 2.5950 0.0000 29 1 5.2618 0.2360 0.3652 30 1 3.7927 -0.7214 0.6708 31 1 4.6934 0.1528 -1.9962 32 1 3.8255 -2.8170 -0.0265 33 1 3.4198 -3.0323 -1.7463 34 1 4.8271 -3.8725 -1.0513 35 1 6.2166 -2.9208 -2.8392 36 1 4.8899 -1.9485 -3.5194 37 1 7.5476 -1.7326 -6.0603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:10 Heat of formation + Delta-G solvation = -34.777639 kcal Electronic energy + Delta-G solvation = -18256.045982 eV Core-core repulsion = 15418.401990 eV Total energy + Delta-G solvation = -2837.643992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.58402 -38.75204 -38.24365 -35.17721 -34.00161 -32.28545 -30.66960 -29.26894 -28.11958 -26.39443 -24.90712 -23.86761 -22.66897 -21.11836 -19.23643 -18.50762 -18.05838 -16.96180 -16.88904 -16.34586 -16.28449 -15.82288 -15.25310 -14.90627 -14.63786 -14.28207 -14.06444 -13.70498 -13.55128 -13.40657 -13.21843 -12.91506 -12.64319 -12.58938 -12.33217 -12.30407 -12.07937 -11.89185 -11.28676 -11.02818 -10.72257 -10.57574 -10.55613 -9.33373 -9.12364 -8.18463 -6.29037 0.20117 0.37809 1.39914 1.40362 1.52470 2.28068 2.40883 2.81778 3.14057 3.40211 3.59996 3.93745 4.03411 4.12543 4.29922 4.38122 4.47147 4.48468 4.57474 4.58556 4.72358 4.75187 4.78949 4.90220 5.03221 5.15933 5.22853 5.32313 5.36106 5.49864 5.55350 5.58331 5.84923 6.21679 6.35566 6.44241 6.64440 6.86199 6.92394 7.39652 8.93600 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.006108 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.608597 B = 4582.981487 C = 5474.779673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.312 6.312 3 C 0.319 3.681 4 N -0.560 5.560 5 C 0.128 3.872 6 C -0.205 4.205 7 C -0.045 4.045 8 C -0.168 4.168 9 C 0.118 3.882 10 N -0.677 5.677 11 C 0.097 3.903 12 H 0.028 0.972 13 C -0.125 4.125 14 C 0.028 3.972 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.962 3.038 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.191 0.809 27 H 0.169 0.831 28 H 0.151 0.849 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.340 0.660 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.053 0.947 35 H -0.004 1.004 36 H -0.006 1.006 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.707 9.830 12.881 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.219 6.219 3 C 0.141 3.859 4 N -0.285 5.285 5 C -0.028 4.028 6 C -0.224 4.224 7 C -0.071 4.071 8 C -0.171 4.171 9 C -0.012 4.012 10 N -0.309 5.309 11 C -0.012 4.012 12 H 0.046 0.954 13 C -0.183 4.183 14 C -0.010 4.010 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.787 3.213 20 H -0.183 1.183 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.131 0.869 26 H 0.207 0.793 27 H 0.187 0.813 28 H 0.169 0.831 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.159 0.841 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.014 0.986 36 H 0.012 0.988 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.076 9.056 12.774 19.180 hybrid contribution 2.156 0.745 -0.606 2.360 sum -8.921 9.801 12.168 17.991 Atomic orbital electron populations 1.22970 0.76577 1.04091 1.01913 1.86330 1.23651 1.24557 1.87327 1.19794 0.89176 0.84982 0.91985 1.67371 1.41305 0.99407 1.20397 1.23012 0.93846 0.93781 0.92143 1.22291 0.94639 1.00474 1.05042 1.21709 1.01660 0.90836 0.92891 1.19990 0.91584 0.96921 1.08624 1.20597 0.96398 0.92685 0.91479 1.60601 1.56220 1.07397 1.06727 1.21429 0.92605 0.90342 0.96847 0.95368 1.21678 0.99186 0.96591 1.00821 1.19135 0.94314 0.95594 0.91923 1.21543 1.24435 1.10395 1.00533 0.92231 1.25925 0.98910 0.98493 0.96253 1.70112 1.44181 1.35463 1.07494 0.85444 0.78351 0.79125 0.78394 1.18294 1.20695 1.20692 0.92108 0.93093 0.86853 0.79254 0.81342 0.83121 0.94436 0.90599 0.84091 0.92253 0.93606 0.92800 0.98570 0.98806 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.38 113.37 1.18 2.10 16 2 O -0.31 -9.87 9.73 -90.03 -0.88 -10.74 16 3 C 0.32 10.02 7.47 84.78 0.63 10.65 16 4 N -0.56 -15.61 9.22 -308.93 -2.85 -18.45 16 5 C 0.13 2.71 11.18 84.64 0.95 3.66 16 6 C -0.20 -4.08 10.11 22.37 0.23 -3.86 16 7 C -0.05 -1.13 9.81 22.44 0.22 -0.91 16 8 C -0.17 -5.14 5.42 -19.67 -0.11 -5.25 16 9 C 0.12 3.90 5.30 85.56 0.45 4.36 16 10 N -0.68 -27.14 6.30 -495.59 -3.12 -30.27 16 11 C 0.10 4.15 2.59 44.91 0.12 4.27 16 12 H 0.03 1.20 7.80 -2.39 -0.02 1.19 16 13 C -0.12 -4.63 9.41 71.98 0.68 -3.95 16 14 C 0.03 1.48 4.57 29.85 0.14 1.61 16 15 C -0.53 -29.50 8.12 25.60 0.21 -29.29 16 16 H 0.06 3.15 7.49 -2.91 -0.02 3.13 16 17 C 0.00 0.12 5.46 84.66 0.46 0.58 16 18 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 19 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 24 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 25 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.04 1.19 7.95 -2.39 -0.02 1.17 16 30 H 0.08 2.49 7.16 -2.39 -0.02 2.47 16 31 H 0.34 14.92 7.20 -89.69 -0.65 14.28 16 32 H 0.06 1.94 7.45 -2.39 -0.02 1.92 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 36 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -67.59 313.66 1.02 -66.57 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.40 Total: 19.65 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 5.15 Total: -16.03 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -5.68 Total: -105.25 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.88 Total: -10.74 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -67.59 1.02 -66.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.790 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds