Wall clock time and date at job start Mon Mar 30 2020 21:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47202 * 2 1 4 4 N 1.46497 * 109.47299 * 185.06626 * 3 2 1 5 5 C 1.35539 * 125.67696 * 261.19835 * 4 3 2 6 6 C 1.35455 * 108.87203 * 179.82710 * 5 4 3 7 7 C 1.39833 * 107.86141 * 0.43468 * 6 5 4 8 8 C 1.37650 * 125.68016 * 81.50735 * 4 3 2 9 9 C 1.46673 * 126.23186 * 359.97438 * 8 4 3 10 10 O 1.21701 * 120.00176 * 347.80286 * 9 8 4 11 11 N 1.34776 * 119.99950 * 167.80527 * 9 8 4 12 12 C 1.46501 * 120.00381 * 0.27585 * 11 9 8 13 13 C 1.46503 * 120.00260 * 180.26876 * 11 9 8 14 14 C 1.50704 * 109.46872 * 89.99808 * 13 11 9 15 15 H 1.07993 * 120.00000 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99889 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00125 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99745 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47102 * 60.00373 * 18 16 14 20 20 H 1.48503 * 109.46882 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.46914 * 299.99866 * 18 16 14 22 22 H 1.09003 * 109.46813 * 304.97224 * 1 2 3 23 23 H 1.08994 * 109.47544 * 64.96911 * 1 2 3 24 24 H 1.08996 * 109.47235 * 184.97966 * 1 2 3 25 25 H 1.09006 * 109.46744 * 240.00627 * 2 1 3 26 26 H 1.08999 * 109.47332 * 120.00525 * 2 1 3 27 27 H 1.09003 * 109.46871 * 65.06312 * 3 2 1 28 28 H 1.09003 * 109.47396 * 305.06538 * 3 2 1 29 29 H 1.07998 * 125.56030 * 359.97438 * 5 4 3 30 30 H 1.07993 * 126.06885 * 180.16863 * 6 5 4 31 31 H 1.08006 * 126.45714 * 179.76264 * 7 6 5 32 32 H 1.08997 * 109.47204 * 83.37134 * 12 11 9 33 33 H 1.08992 * 109.47125 * 203.37364 * 12 11 9 34 34 H 1.09005 * 109.46222 * 323.37120 * 12 11 9 35 35 H 1.08997 * 109.47668 * 210.00333 * 13 11 9 36 36 H 1.09007 * 109.47090 * 330.00869 * 13 11 9 37 37 H 0.97007 * 120.00327 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4999 1.4443 -0.1220 5 6 4.3784 1.5816 0.9010 6 6 5.6384 1.5309 0.4062 7 6 5.5487 1.3653 -0.9794 8 6 4.2077 1.3128 -1.2952 9 6 3.6388 1.1465 -2.6368 10 8 2.4559 0.8928 -2.7691 11 7 4.4261 1.2745 -3.7232 12 6 5.8513 1.5739 -3.5639 13 6 3.8568 1.1143 -5.0635 14 6 3.3742 2.4501 -5.5673 15 1 3.4813 3.3304 -4.9510 16 6 2.7960 2.5484 -6.8151 17 7 2.6651 1.4763 -7.5655 18 14 2.1985 4.2044 -7.4398 19 1 3.3397 5.1527 -7.4977 20 1 1.6201 4.0417 -8.7979 21 1 1.1601 4.7348 -6.5204 22 1 -0.3633 0.5891 0.8421 23 1 -0.3634 0.4348 -0.9311 24 1 -0.3633 -1.0237 0.0892 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.7526 1.9294 0.9319 28 1 1.6045 1.9819 -0.8411 29 1 4.1166 1.7083 1.9411 30 1 6.5502 1.6092 0.9795 31 1 6.3744 1.2918 -1.6717 32 1 6.3978 0.6499 -3.3748 33 1 6.2288 2.0394 -4.4743 34 1 5.9877 2.2552 -2.7240 35 1 4.6194 0.7254 -5.7382 36 1 3.0193 0.4177 -5.0217 37 1 2.2586 1.5454 -8.4435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701223700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:42 Heat of formation + Delta-G solvation = 2.909029 kcal Electronic energy + Delta-G solvation = -18639.142752 eV Core-core repulsion = 15803.132977 eV Total energy + Delta-G solvation = -2836.009775 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.37201 -39.93136 -36.92046 -35.86769 -34.76734 -32.15713 -31.01109 -29.02079 -27.80922 -26.79941 -25.24877 -22.92603 -22.22346 -21.50363 -19.92764 -18.72286 -18.09163 -17.17876 -16.75881 -16.42812 -16.08043 -15.88597 -15.37721 -14.95118 -14.54554 -14.25030 -13.89053 -13.78822 -13.66321 -13.51110 -13.39565 -12.99344 -12.95499 -12.72210 -12.62903 -12.26467 -12.20714 -11.90668 -11.76270 -11.70097 -10.71685 -10.66392 -9.64859 -9.44864 -9.05203 -8.24342 -6.40054 0.64674 1.34449 1.38642 1.46363 1.78466 1.95289 2.32282 2.50463 2.59331 3.04373 3.74340 3.77997 3.93183 4.17915 4.28460 4.36281 4.40221 4.50451 4.59500 4.65129 4.67405 4.77185 4.92212 4.94503 5.02538 5.15899 5.20881 5.25989 5.29419 5.37277 5.52915 5.78401 5.98089 6.03041 6.08760 6.45948 6.66768 6.73814 7.24652 7.43622 8.82314 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.006542 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.665009 B = 4279.042226 C = 4985.201833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.105 3.895 4 N -0.418 5.418 5 C 0.020 3.980 6 C -0.217 4.217 7 C -0.159 4.159 8 C -0.081 4.081 9 C 0.560 3.440 10 O -0.595 6.595 11 N -0.598 5.598 12 C 0.064 3.936 13 C 0.264 3.736 14 C -0.545 4.545 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.927 5.927 18 Si 0.968 3.032 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.279 1.279 22 H 0.081 0.919 23 H 0.035 0.965 24 H 0.066 0.934 25 H 0.035 0.965 26 H 0.081 0.919 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.206 0.794 30 H 0.172 0.828 31 H 0.176 0.824 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.028 0.972 36 H -0.001 1.001 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 0.592 18.737 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.016 4.016 4 N -0.091 5.091 5 C -0.115 4.115 6 C -0.240 4.240 7 C -0.185 4.185 8 C -0.194 4.194 9 C 0.350 3.650 10 O -0.479 6.479 11 N -0.328 5.328 12 C -0.078 4.078 13 C 0.143 3.857 14 C -0.584 4.584 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.205 1.205 22 H 0.100 0.900 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.223 0.777 30 H 0.189 0.811 31 H 0.193 0.807 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.046 0.954 36 H 0.017 0.983 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.865 0.391 18.449 18.854 hybrid contribution -0.584 0.475 -1.101 1.334 sum 3.281 0.866 17.349 17.677 Atomic orbital electron populations 1.21619 0.93506 1.02807 1.01942 1.21720 0.97672 0.95270 1.01734 1.22082 0.76226 0.99187 1.04119 1.44247 1.07134 1.52214 1.05552 1.22731 0.88878 1.05754 0.94130 1.21234 0.97787 1.11185 0.93815 1.22496 0.93756 1.04279 0.97949 1.20080 0.92817 1.19966 0.86529 1.17645 0.85474 0.77480 0.84356 1.90711 1.17407 1.52210 1.87552 1.47810 1.10578 1.68183 1.06186 1.22612 0.79411 1.01765 1.04009 1.18791 0.93101 0.95963 0.77862 1.21636 1.40587 0.94626 1.01504 0.93199 1.25854 0.95448 1.00978 0.96685 1.70042 1.44828 1.30470 1.11339 0.85464 0.78863 0.79130 0.77336 1.18412 1.19976 1.20454 0.90019 0.94563 0.91459 0.94651 0.89995 0.85540 0.92068 0.77721 0.81093 0.80684 0.90498 0.91186 0.88196 0.95443 0.98270 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.91 71.98 0.71 -2.64 16 2 C -0.13 -3.48 6.06 30.59 0.19 -3.29 16 3 C 0.10 2.92 5.33 86.38 0.46 3.38 16 4 N -0.42 -12.55 2.76 -511.02 -1.41 -13.97 16 5 C 0.02 0.43 11.36 83.48 0.95 1.38 16 6 C -0.22 -4.77 10.81 22.01 0.24 -4.53 16 7 C -0.16 -4.51 8.70 22.57 0.20 -4.31 16 8 C -0.08 -2.96 6.71 40.35 0.27 -2.69 16 9 C 0.56 26.35 7.62 86.45 0.66 27.01 16 10 O -0.60 -32.52 13.44 -4.35 -0.06 -32.57 16 11 N -0.60 -27.89 2.86 -855.87 -2.44 -30.34 16 12 C 0.06 2.14 8.71 127.77 1.11 3.25 16 13 C 0.26 14.96 5.13 85.63 0.44 15.40 16 14 C -0.55 -32.65 9.39 25.60 0.24 -32.41 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.56 5.46 84.65 0.46 1.02 16 17 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 18 Si 0.97 45.85 29.54 68.60 2.03 47.87 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 22 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 1.31 7.00 -2.38 -0.02 1.29 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.13 2.33 8.11 -2.39 -0.02 2.31 16 28 H 0.06 2.18 7.15 -2.39 -0.02 2.17 16 29 H 0.21 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.18 4.25 4.51 -2.91 -0.01 4.23 16 32 H 0.08 2.13 7.51 -2.39 -0.02 2.12 16 33 H 0.07 2.38 8.02 -2.39 -0.02 2.36 16 34 H 0.10 2.92 5.02 -2.38 -0.01 2.91 16 35 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 36 H 0.00 -0.05 7.42 -2.38 -0.02 -0.07 16 37 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -77.56 306.01 5.37 -72.19 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.05 Total: 12.12 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.93 Total: 1.57 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -3.57 Total: -101.17 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.06 Total: -32.57 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -77.56 5.37 -72.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701223700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.099 kcal (2) G-P(sol) polarization free energy of solvation -77.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds