Wall clock time and date at job start Mon Mar 30 2020 21:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47050 * 2 1 4 4 C 1.35586 * 125.68223 * 266.31885 * 3 2 1 5 5 C 1.35489 * 108.88243 * 179.97438 * 4 3 2 6 6 C 1.39799 * 107.87959 * 0.02562 * 5 4 3 7 7 C 1.37672 * 125.68427 * 86.32057 * 3 2 1 8 8 C 1.46543 * 126.23652 * 359.73531 * 7 3 2 9 9 O 1.21738 * 120.00658 * 15.72140 * 8 7 3 10 10 N 1.34783 * 119.99862 * 195.72121 * 8 7 3 11 11 C 1.36880 * 120.00055 * 172.22323 * 10 8 7 12 12 H 1.07998 * 119.99646 * 28.31734 * 11 10 8 13 13 C 1.39006 * 119.99969 * 208.30691 * 11 10 8 14 14 N 1.31390 * 119.99963 * 19.66355 * 13 11 10 15 15 Si 1.86805 * 119.99991 * 199.65798 * 13 11 10 16 16 H 1.48501 * 109.46703 * 89.99933 * 15 13 11 17 17 H 1.48495 * 109.47375 * 210.00428 * 15 13 11 18 18 H 1.48503 * 109.47148 * 330.00676 * 15 13 11 19 19 C 1.46502 * 119.99989 * 352.22810 * 10 8 7 20 20 C 1.53003 * 109.46768 * 294.54105 * 19 10 8 21 21 C 1.52994 * 109.47117 * 54.53875 * 19 10 8 22 22 H 1.08994 * 109.47019 * 64.99254 * 1 2 3 23 23 H 1.09000 * 109.47009 * 184.99385 * 1 2 3 24 24 H 1.08996 * 109.46913 * 304.98775 * 1 2 3 25 25 H 1.09004 * 109.47114 * 240.00406 * 2 1 3 26 26 H 1.09000 * 109.47324 * 120.00084 * 2 1 3 27 27 H 1.08002 * 125.56139 * 359.97438 * 4 3 2 28 28 H 1.08001 * 126.05794 * 179.97438 * 5 4 3 29 29 H 1.08001 * 126.46035 * 180.02562 * 6 5 4 30 30 H 0.97004 * 119.99878 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47146 * 174.54211 * 19 10 8 32 32 H 1.08992 * 109.47081 * 35.96234 * 20 19 10 33 33 H 1.09002 * 109.46724 * 155.96028 * 20 19 10 34 34 H 1.08997 * 109.46791 * 275.95655 * 20 19 10 35 35 H 1.09001 * 109.47100 * 92.40836 * 21 19 10 36 36 H 1.09004 * 109.47393 * 212.40791 * 21 19 10 37 37 H 1.08999 * 109.47421 * 332.41121 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3486 2.1033 -1.0990 5 6 2.7567 3.3347 -0.7083 6 6 2.6811 3.3894 0.6866 7 6 2.2184 2.1623 1.1159 8 6 1.9774 1.7651 2.5058 9 8 1.8405 0.5888 2.7878 10 7 1.9072 2.7023 3.4719 11 6 1.5257 2.3519 4.7389 12 1 1.7160 1.3532 5.1033 13 6 0.8937 3.2815 5.5566 14 7 0.3183 4.3377 5.0278 15 14 0.8623 3.0290 7.4072 16 1 2.0536 3.6744 8.0151 17 1 -0.3707 3.6368 7.9689 18 1 0.8792 1.5750 7.7088 19 6 2.2392 4.0960 3.1660 20 6 3.7224 4.1995 2.8051 21 6 1.3924 4.5746 1.9851 22 1 -0.3633 0.4344 -0.9313 23 1 -0.3633 -1.0238 0.0895 24 1 -0.3633 0.5892 0.8419 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 2.2951 1.7539 -2.1196 28 1 3.0834 4.1324 -1.3590 29 1 2.9361 4.2333 1.3106 30 1 -0.1231 4.9863 5.5984 31 1 2.0329 4.7183 4.0368 32 1 4.0252 3.3094 2.2538 33 1 3.8852 5.0825 2.1871 34 1 4.3135 4.2806 3.7173 35 1 0.4815 5.0434 2.3574 36 1 1.9604 5.2981 1.4001 37 1 1.1318 3.7233 1.3562 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701243848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:04 Heat of formation + Delta-G solvation = 106.660654 kcal Electronic energy + Delta-G solvation = -19740.429618 eV Core-core repulsion = 16908.918851 eV Total energy + Delta-G solvation = -2831.510767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35015 -38.28821 -36.10038 -33.70705 -32.68928 -30.68893 -28.67477 -28.35870 -26.26475 -25.01782 -23.07961 -21.77191 -21.09281 -19.53276 -18.06234 -16.65949 -16.41934 -15.25589 -14.81349 -14.60784 -14.10753 -14.01851 -13.70585 -13.46606 -12.91269 -12.81038 -12.41841 -12.32347 -11.75382 -11.65768 -11.49015 -11.28231 -11.17836 -10.98595 -10.79756 -10.48900 -10.39974 -10.31280 -10.05202 -9.36460 -8.87701 -8.42869 -7.93043 -7.55644 -7.07082 -6.36010 -3.88289 2.38333 3.18310 3.25192 3.29009 3.40583 3.47681 4.14054 4.43978 4.87825 5.07754 5.10096 5.41171 5.46193 5.63690 5.68261 5.82430 5.85226 5.94588 6.04940 6.14379 6.21929 6.34972 6.44043 6.47158 6.55523 6.63738 6.81339 6.83015 6.94936 7.36910 7.41654 7.48103 7.57749 7.72597 7.91168 8.21876 8.53657 9.16553 9.41718 10.02153 10.67836 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.008528 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.498677 B = 3282.461745 C = 3863.624344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.412 5.412 4 C -0.017 4.017 5 C -0.229 4.229 6 C -0.183 4.183 7 C -0.037 4.037 8 C 0.517 3.483 9 O -0.597 6.597 10 N -0.417 5.417 11 C -0.303 4.303 12 H 0.099 0.901 13 C 0.032 3.968 14 N -0.864 5.864 15 Si 0.922 3.078 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.126 3.874 20 C -0.179 4.179 21 C -0.176 4.176 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.153 0.847 28 H 0.130 0.870 29 H 0.199 0.801 30 H 0.269 0.731 31 H 0.123 0.877 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 0.225 -8.773 9.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.086 5.086 4 C -0.151 4.151 5 C -0.254 4.254 6 C -0.207 4.207 7 C -0.150 4.150 8 C 0.307 3.693 9 O -0.484 6.484 10 N -0.134 5.134 11 C -0.431 4.431 12 H 0.116 0.884 13 C -0.172 4.172 14 N -0.502 5.502 15 Si 0.749 3.251 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.193 1.193 19 C 0.021 3.979 20 C -0.236 4.236 21 C -0.233 4.233 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.171 0.829 28 H 0.148 0.852 29 H 0.215 0.785 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.568 -0.555 -8.497 8.894 hybrid contribution -0.170 0.084 0.632 0.660 sum 2.398 -0.471 -7.865 8.236 Atomic orbital electron populations 1.22050 0.94749 1.02596 1.02461 1.21947 0.95509 0.80649 1.04413 1.43999 1.47961 1.11257 1.05368 1.21728 1.08593 0.93677 0.91099 1.20732 1.11904 0.97222 0.95562 1.23779 1.02654 0.98492 0.95798 1.20694 1.13166 0.92456 0.88726 1.16898 0.83410 0.86178 0.82825 1.90569 1.57294 1.17564 1.82984 1.43311 1.56411 1.05757 1.07935 1.19591 1.35861 1.00129 0.87558 0.88372 1.25337 0.94836 0.96456 1.00592 1.69949 1.31860 1.12707 1.35666 0.85991 0.77612 0.78945 0.82582 1.20283 1.20987 1.19348 1.21311 0.90735 0.85414 1.00392 1.22817 0.98372 1.01560 1.00881 1.23230 1.00147 1.01816 0.98070 0.92922 0.91290 0.91359 0.90492 0.87200 0.82934 0.85229 0.78549 0.92117 0.85984 0.91427 0.92033 0.93249 0.92955 0.93193 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.24 37.16 0.38 -2.13 16 2 C 0.10 1.59 6.36 -4.04 -0.03 1.57 16 3 N -0.41 -7.75 2.76 -112.85 -0.31 -8.06 16 4 C -0.02 -0.27 11.38 -16.87 -0.19 -0.46 16 5 C -0.23 -3.81 10.81 -39.98 -0.43 -4.25 16 6 C -0.18 -3.51 4.74 -39.09 -0.19 -3.70 16 7 C -0.04 -0.81 5.17 -81.98 -0.42 -1.23 16 8 C 0.52 13.33 6.79 -12.91 -0.09 13.24 16 9 O -0.60 -16.73 14.55 5.15 0.07 -16.65 16 10 N -0.42 -10.85 2.53 -109.24 -0.28 -11.12 16 11 C -0.30 -8.43 9.17 -15.01 -0.14 -8.56 16 12 H 0.10 2.86 7.50 -52.49 -0.39 2.46 16 13 C 0.03 0.83 4.88 -17.46 -0.09 0.74 16 14 N -0.86 -22.62 11.09 55.50 0.62 -22.00 16 15 Si 0.92 20.42 29.60 -169.99 -5.03 15.39 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 C 0.13 2.83 2.39 -67.93 -0.16 2.67 16 20 C -0.18 -3.38 8.12 37.16 0.30 -3.08 16 21 C -0.18 -3.66 7.83 37.15 0.29 -3.37 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 25 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 26 H 0.11 2.11 6.32 -51.93 -0.33 1.78 16 27 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.20 3.62 1.00 -93.76 -0.09 3.52 16 30 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.12 2.98 5.42 -51.93 -0.28 2.70 16 32 H 0.07 1.35 5.30 -51.93 -0.28 1.07 16 33 H 0.06 0.96 6.89 -51.93 -0.36 0.61 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.87 6.26 -51.93 -0.33 0.55 16 37 H 0.09 1.98 3.79 -67.81 -0.26 1.73 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -30.49 285.46 -6.21 -36.70 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.83 Total: 10.00 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.76 Total: -8.55 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.03 Total: -41.19 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.07 Total: -16.65 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.49 -6.21 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701243848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.362 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds