Wall clock time and date at job start Mon Mar 30 2020 21:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47050 * 2 1 4 4 C 1.35586 * 125.68223 * 266.31885 * 3 2 1 5 5 C 1.35489 * 108.88243 * 179.97438 * 4 3 2 6 6 C 1.39799 * 107.87959 * 0.02562 * 5 4 3 7 7 C 1.37672 * 125.68427 * 86.32057 * 3 2 1 8 8 C 1.46543 * 126.23652 * 359.73531 * 7 3 2 9 9 O 1.21738 * 120.00658 * 15.72140 * 8 7 3 10 10 N 1.34783 * 119.99862 * 195.72121 * 8 7 3 11 11 C 1.36880 * 120.00055 * 172.22323 * 10 8 7 12 12 H 1.07998 * 119.99646 * 28.31734 * 11 10 8 13 13 C 1.39006 * 119.99969 * 208.30691 * 11 10 8 14 14 N 1.31390 * 119.99963 * 19.66355 * 13 11 10 15 15 Si 1.86805 * 119.99991 * 199.65798 * 13 11 10 16 16 H 1.48501 * 109.46703 * 89.99933 * 15 13 11 17 17 H 1.48495 * 109.47375 * 210.00428 * 15 13 11 18 18 H 1.48503 * 109.47148 * 330.00676 * 15 13 11 19 19 C 1.46502 * 119.99989 * 352.22810 * 10 8 7 20 20 C 1.53003 * 109.46768 * 294.54105 * 19 10 8 21 21 C 1.52994 * 109.47117 * 54.53875 * 19 10 8 22 22 H 1.08994 * 109.47019 * 64.99254 * 1 2 3 23 23 H 1.09000 * 109.47009 * 184.99385 * 1 2 3 24 24 H 1.08996 * 109.46913 * 304.98775 * 1 2 3 25 25 H 1.09004 * 109.47114 * 240.00406 * 2 1 3 26 26 H 1.09000 * 109.47324 * 120.00084 * 2 1 3 27 27 H 1.08002 * 125.56139 * 359.97438 * 4 3 2 28 28 H 1.08001 * 126.05794 * 179.97438 * 5 4 3 29 29 H 1.08001 * 126.46035 * 180.02562 * 6 5 4 30 30 H 0.97004 * 119.99878 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47146 * 174.54211 * 19 10 8 32 32 H 1.08992 * 109.47081 * 35.96234 * 20 19 10 33 33 H 1.09002 * 109.46724 * 155.96028 * 20 19 10 34 34 H 1.08997 * 109.46791 * 275.95655 * 20 19 10 35 35 H 1.09001 * 109.47100 * 92.40836 * 21 19 10 36 36 H 1.09004 * 109.47393 * 212.40791 * 21 19 10 37 37 H 1.08999 * 109.47421 * 332.41121 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3486 2.1033 -1.0990 5 6 2.7567 3.3347 -0.7083 6 6 2.6811 3.3894 0.6866 7 6 2.2184 2.1623 1.1159 8 6 1.9774 1.7651 2.5058 9 8 1.8405 0.5888 2.7878 10 7 1.9072 2.7023 3.4719 11 6 1.5257 2.3519 4.7389 12 1 1.7160 1.3532 5.1033 13 6 0.8937 3.2815 5.5566 14 7 0.3183 4.3377 5.0278 15 14 0.8623 3.0290 7.4072 16 1 2.0536 3.6744 8.0151 17 1 -0.3707 3.6368 7.9689 18 1 0.8792 1.5750 7.7088 19 6 2.2392 4.0960 3.1660 20 6 3.7224 4.1995 2.8051 21 6 1.3924 4.5746 1.9851 22 1 -0.3633 0.4344 -0.9313 23 1 -0.3633 -1.0238 0.0895 24 1 -0.3633 0.5892 0.8419 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 2.2951 1.7539 -2.1196 28 1 3.0834 4.1324 -1.3590 29 1 2.9361 4.2333 1.3106 30 1 -0.1231 4.9863 5.5984 31 1 2.0329 4.7183 4.0368 32 1 4.0252 3.3094 2.2538 33 1 3.8852 5.0825 2.1871 34 1 4.3135 4.2806 3.7173 35 1 0.4815 5.0434 2.3574 36 1 1.9604 5.2981 1.4001 37 1 1.1318 3.7233 1.3562 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701243848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:04 Heat of formation + Delta-G solvation = 88.084046 kcal Electronic energy + Delta-G solvation = -19741.235160 eV Core-core repulsion = 16908.918851 eV Total energy + Delta-G solvation = -2832.316309 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.85617 -40.00007 -37.93518 -35.42709 -34.27355 -32.59741 -30.06623 -29.88406 -27.87067 -26.96015 -24.43527 -23.46456 -22.74842 -20.99217 -19.71965 -18.39534 -18.08987 -17.20829 -16.32459 -16.25179 -15.90339 -15.63610 -15.21628 -15.06343 -14.58059 -14.25716 -13.93372 -13.83543 -13.39999 -13.26039 -13.06698 -12.94948 -12.80206 -12.47449 -12.27991 -12.18069 -12.14500 -12.00302 -11.82475 -11.06019 -10.69916 -10.37367 -9.55677 -9.24586 -8.59754 -8.35478 -5.97134 0.83786 1.40180 1.41833 1.52267 1.99892 2.12187 2.32370 2.60600 3.10346 3.12993 3.87289 4.02140 4.14741 4.21290 4.30673 4.34130 4.42734 4.55959 4.59273 4.77655 4.83025 4.86386 4.93672 4.97187 5.04432 5.13232 5.24185 5.38073 5.44859 5.50445 5.66650 5.71847 6.04528 6.21485 6.26288 6.57053 6.65153 7.16183 7.47559 8.07691 8.66786 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.008528 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.498677 B = 3282.461745 C = 3863.624344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.092 3.908 3 N -0.420 5.420 4 C 0.009 3.991 5 C -0.236 4.236 6 C -0.168 4.168 7 C -0.092 4.092 8 C 0.505 3.495 9 O -0.641 6.641 10 N -0.433 5.433 11 C -0.345 4.345 12 H 0.066 0.934 13 C 0.003 3.997 14 N -0.877 5.877 15 Si 0.986 3.014 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.278 1.278 19 C 0.122 3.878 20 C -0.169 4.169 21 C -0.164 4.164 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.017 0.983 25 H 0.125 0.875 26 H 0.072 0.928 27 H 0.202 0.798 28 H 0.167 0.833 29 H 0.202 0.798 30 H 0.275 0.725 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.028 0.972 36 H 0.091 0.909 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 1.581 -11.291 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 N -0.094 5.094 4 C -0.126 4.126 5 C -0.260 4.260 6 C -0.193 4.193 7 C -0.204 4.204 8 C 0.297 3.703 9 O -0.532 6.532 10 N -0.150 5.150 11 C -0.473 4.473 12 H 0.084 0.916 13 C -0.200 4.200 14 N -0.515 5.515 15 Si 0.810 3.190 16 H -0.188 1.188 17 H -0.198 1.198 18 H -0.203 1.203 19 C 0.018 3.982 20 C -0.226 4.226 21 C -0.221 4.221 22 H 0.096 0.904 23 H 0.108 0.892 24 H 0.037 0.963 25 H 0.143 0.857 26 H 0.090 0.910 27 H 0.218 0.782 28 H 0.185 0.815 29 H 0.218 0.782 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.109 0.891 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.296 0.838 -11.016 11.529 hybrid contribution -0.403 -0.358 1.290 1.398 sum 2.893 0.480 -9.726 10.158 Atomic orbital electron populations 1.21982 0.94323 1.03196 1.01443 1.22051 0.95878 0.80099 1.04840 1.44230 1.48032 1.11871 1.05307 1.22599 1.04811 0.93039 0.92122 1.21170 1.11808 0.98588 0.94443 1.23882 1.00695 0.97253 0.97424 1.20247 1.17909 0.94712 0.87551 1.17584 0.82339 0.85608 0.84775 1.90509 1.59201 1.19271 1.84178 1.43525 1.56713 1.07210 1.07553 1.19485 1.38513 0.99711 0.89597 0.91581 1.26052 0.93724 0.95869 1.04397 1.70020 1.31405 1.12940 1.37094 0.85056 0.78372 0.78312 0.77309 1.18780 1.19767 1.20310 1.21423 0.93307 0.83285 1.00174 1.22716 0.95549 1.02831 1.01484 1.23150 0.99468 1.01856 0.97583 0.90419 0.89241 0.96332 0.85744 0.90968 0.78167 0.81532 0.78199 0.91514 0.88229 0.92513 0.87857 0.93339 0.95284 0.89098 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 10.24 71.98 0.74 -3.94 16 2 C 0.09 2.98 6.36 86.38 0.55 3.53 16 3 N -0.42 -15.17 2.76 -510.94 -1.41 -16.58 16 4 C 0.01 0.26 11.38 83.48 0.95 1.21 16 5 C -0.24 -6.77 10.81 22.01 0.24 -6.53 16 6 C -0.17 -6.07 4.74 22.59 0.11 -5.96 16 7 C -0.09 -4.04 5.17 40.34 0.21 -3.83 16 8 C 0.50 27.52 6.79 86.41 0.59 28.11 16 9 O -0.64 -38.80 14.55 -4.47 -0.07 -38.86 16 10 N -0.43 -23.72 2.53 -617.74 -1.56 -25.28 16 11 C -0.35 -20.40 9.17 84.09 0.77 -19.63 16 12 H 0.07 4.20 7.50 -2.91 -0.02 4.18 16 13 C 0.00 0.14 4.88 84.94 0.41 0.55 16 14 N -0.88 -47.06 11.09 21.67 0.24 -46.82 16 15 Si 0.99 43.02 29.60 68.60 2.03 45.05 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 C 0.12 5.56 2.39 44.99 0.11 5.67 16 20 C -0.17 -6.22 8.12 71.98 0.58 -5.63 16 21 C -0.16 -6.74 7.83 71.98 0.56 -6.18 16 22 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.12 2.78 8.13 -2.38 -0.02 2.76 16 26 H 0.07 2.90 6.32 -2.39 -0.02 2.88 16 27 H 0.20 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.20 6.86 1.00 -41.68 -0.04 6.82 16 30 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.10 4.98 5.42 -2.39 -0.01 4.96 16 32 H 0.06 2.23 5.30 -2.39 -0.01 2.22 16 33 H 0.10 2.89 6.89 -2.39 -0.02 2.88 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 2.91 6.26 -2.38 -0.01 2.89 16 37 H 0.08 3.43 3.79 -17.31 -0.07 3.36 16 Total: -1.00 -72.75 285.46 6.03 -66.71 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.99 Total: 28.42 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 5.82 Total: -12.64 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -2.73 Total: -88.69 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.07 Total: -38.86 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.75 6.03 -66.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701243848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.797 kcal (2) G-P(sol) polarization free energy of solvation -72.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds