Wall clock time and date at job start Mon Mar 30 2020 21:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47118 * 85.23239 * 3 2 1 5 5 C 1.37098 * 120.00449 * 273.28150 * 4 3 2 6 6 H 1.07999 * 120.00554 * 185.45098 * 5 4 3 7 7 C 1.38953 * 119.99629 * 5.45067 * 5 4 3 8 8 N 1.31405 * 119.99908 * 34.11830 * 7 5 4 9 9 Si 1.86801 * 119.99941 * 214.12803 * 7 5 4 10 10 H 1.48498 * 109.47476 * 94.99489 * 9 7 5 11 11 H 1.48502 * 109.46677 * 215.00077 * 9 7 5 12 12 H 1.48503 * 109.47011 * 334.99435 * 9 7 5 13 13 C 1.34786 * 120.00132 * 93.28424 * 4 3 2 14 14 O 1.21296 * 120.00227 * 185.62409 * 13 4 3 15 15 C 1.50702 * 119.99641 * 5.61907 * 13 4 3 16 16 C 1.52991 * 110.28870 * 295.59012 * 15 13 4 17 17 C 1.54379 * 110.32193 * 57.82926 * 15 13 4 18 18 N 1.48562 * 104.59651 * 95.04012 * 17 15 13 19 19 C 1.48561 * 104.22193 * 39.47987 * 18 17 15 20 20 C 1.54259 * 110.32029 * 173.45958 * 15 13 4 21 21 H 1.09004 * 110.31785 * 122.10776 * 20 15 13 22 22 C 1.53000 * 110.32529 * 0.02562 * 20 15 13 23 23 H 4.40631 * 5.51403 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.46605 * 205.23032 * 3 2 1 25 25 H 1.09002 * 109.47319 * 325.23186 * 3 2 1 26 26 H 0.96997 * 119.99937 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47464 * 67.49227 * 16 15 13 28 28 H 1.09006 * 109.46988 * 187.49048 * 16 15 13 29 29 H 1.09001 * 109.47674 * 307.49056 * 16 15 13 30 30 H 1.09003 * 110.41217 * 213.81936 * 17 15 13 31 31 H 1.08999 * 110.41472 * 336.25868 * 17 15 13 32 32 H 1.00903 * 110.99984 * 159.04093 * 18 17 15 33 33 H 1.08999 * 110.41110 * 201.73978 * 19 18 17 34 34 H 1.09006 * 110.51126 * 79.34686 * 19 18 17 35 35 H 1.08995 * 109.47370 * 64.04897 * 22 20 15 36 36 H 1.09003 * 109.46970 * 184.05224 * 22 20 15 37 37 H 1.08997 * 109.46780 * 304.04839 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1139 -1.3764 5 6 3.2994 -1.3507 -1.9446 6 1 3.7417 -1.4395 -2.9258 7 6 2.8975 -2.4898 -1.2579 8 7 1.8402 -2.4485 -0.4786 9 14 3.8603 -4.0799 -1.4424 10 1 4.8463 -4.1926 -0.3377 11 1 2.9259 -5.2330 -1.3916 12 1 4.5740 -4.0782 -2.7446 13 6 3.4216 0.9966 -2.0842 14 8 3.7277 0.9076 -3.2545 15 6 3.3622 2.3488 -1.4216 16 6 1.9292 2.6653 -0.9894 17 6 4.3132 2.3925 -0.2063 18 7 5.5694 2.9837 -0.7351 19 6 5.1093 4.0488 -1.6629 20 6 3.8860 3.4383 -2.3798 21 1 3.1219 4.1987 -2.5421 22 6 4.3065 2.8163 -3.7128 23 1 -1.0499 0.0002 -0.0001 24 1 3.0088 0.9305 0.4381 25 1 3.0098 -0.8434 0.5860 26 1 1.5595 -3.2438 0.0004 27 1 1.6336 1.9886 -0.1876 28 1 1.8757 3.6945 -0.6344 29 1 1.2571 2.5384 -1.8381 30 1 3.8974 3.0235 0.5793 31 1 4.4958 1.3860 0.1701 32 1 6.1289 3.3703 0.0104 33 1 5.8912 4.2893 -2.3832 34 1 4.8184 4.9402 -1.1069 35 1 3.4341 2.3854 -4.2040 36 1 4.7403 3.5854 -4.3519 37 1 5.0447 2.0349 -3.5323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702221629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:25 Heat of formation + Delta-G solvation = 89.496395 kcal Electronic energy + Delta-G solvation = -19786.219139 eV Core-core repulsion = 16953.964074 eV Total energy + Delta-G solvation = -2832.255065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.26727 -37.05238 -35.53922 -32.64532 -31.71860 -31.34612 -30.27865 -26.70079 -25.83341 -25.10127 -24.02149 -21.57259 -20.45656 -18.44391 -17.81814 -16.63885 -16.11619 -15.55582 -14.85632 -14.39000 -14.27726 -13.84744 -13.42724 -13.19065 -13.10933 -12.84765 -12.33124 -11.97325 -11.85086 -11.77763 -11.29132 -11.21945 -10.95792 -10.68270 -10.60882 -10.36530 -10.20442 -9.96339 -9.87566 -9.30138 -8.98234 -8.74986 -8.32414 -7.89149 -7.37803 -6.35514 -3.70128 3.16733 3.29933 3.35400 3.68204 3.94945 4.04491 4.23419 4.53331 4.83941 4.92400 4.97405 5.21420 5.39803 5.46129 5.50948 5.67993 5.78983 5.86229 5.96957 6.02612 6.06706 6.16719 6.33169 6.36856 6.48847 6.62019 6.67238 6.72806 6.95375 7.03375 7.10884 7.51470 7.56265 7.60607 8.10046 8.48718 8.85361 9.20994 9.43878 10.01184 10.63637 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.008952 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.134890 B = 3127.113226 C = 3608.967255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.106 4.106 3 C 0.215 3.785 4 N -0.436 5.436 5 C -0.323 4.323 6 H 0.108 0.892 7 C 0.038 3.962 8 N -0.843 5.843 9 Si 0.904 3.096 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.461 3.539 14 O -0.563 6.563 15 C -0.074 4.074 16 C -0.148 4.148 17 C 0.038 3.962 18 N -0.658 5.658 19 C 0.040 3.960 20 C -0.076 4.076 21 H 0.067 0.933 22 C -0.107 4.107 23 H 0.197 0.803 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.267 0.733 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.330 0.670 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.072 0.928 36 H -0.002 1.002 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 9.633 4.472 10.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.108 4.108 3 C 0.092 3.908 4 N -0.154 5.154 5 C -0.449 4.449 6 H 0.126 0.874 7 C -0.168 4.168 8 N -0.479 5.479 9 Si 0.730 3.270 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.193 1.193 13 C 0.251 3.749 14 O -0.448 6.448 15 C -0.078 4.078 16 C -0.206 4.206 17 C -0.091 4.091 18 N -0.286 5.286 19 C -0.089 4.089 20 C -0.095 4.095 21 H 0.086 0.914 22 C -0.163 4.163 23 H 0.215 0.785 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.017 0.983 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.920 8.893 3.503 9.749 hybrid contribution -0.421 -0.272 0.809 0.952 sum 1.499 8.621 4.312 9.755 Atomic orbital electron populations 1.24213 0.95306 1.06619 1.01808 1.22926 0.94194 0.94980 0.98654 1.18696 0.84643 1.01145 0.86347 1.43866 1.55510 1.05711 1.10325 1.19612 1.39784 0.80730 1.04799 0.87443 1.25144 0.95009 0.99242 0.97366 1.70282 1.18013 1.30240 1.29405 0.86266 0.80179 0.81392 0.79120 1.20417 1.21375 1.19294 1.19646 0.83952 0.84492 0.86807 1.90673 1.53108 1.84990 1.16027 1.21325 0.95579 0.95555 0.95318 1.22217 0.94578 1.01110 1.02663 1.23309 0.89805 1.00785 0.95174 1.63708 1.16519 1.29498 1.18872 1.23030 0.97609 0.92390 0.95904 1.21868 0.95561 0.95551 0.96550 0.91447 1.22221 1.03843 0.96829 0.93412 0.78542 0.90474 0.88570 0.92265 0.90316 0.92980 0.92223 0.93945 0.88850 0.85503 0.90285 0.94942 0.90964 0.98322 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.36 19.20 29.55 0.57 -4.79 16 2 C -0.11 -2.33 8.52 -37.12 -0.32 -2.65 16 3 C 0.22 4.67 4.04 -6.83 -0.03 4.65 16 4 N -0.44 -10.82 2.51 -117.93 -0.30 -11.12 16 5 C -0.32 -8.86 9.35 -14.93 -0.14 -9.00 16 6 H 0.11 3.16 7.39 -52.49 -0.39 2.77 16 7 C 0.04 0.99 4.68 -17.47 -0.08 0.91 16 8 N -0.84 -21.94 9.54 55.50 0.53 -21.41 16 9 Si 0.90 20.43 29.66 -169.99 -5.04 15.39 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.46 10.93 6.24 -10.98 -0.07 10.87 16 14 O -0.56 -14.86 10.22 5.54 0.06 -14.80 16 15 C -0.07 -1.36 0.68 -154.28 -0.10 -1.47 16 16 C -0.15 -2.51 7.55 37.15 0.28 -2.23 16 17 C 0.04 0.62 5.12 -2.18 -0.01 0.61 16 18 N -0.66 -10.09 7.62 -109.66 -0.84 -10.93 16 19 C 0.04 0.58 7.01 -2.18 -0.02 0.56 16 20 C -0.08 -1.30 3.30 -89.24 -0.29 -1.59 16 21 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 22 C -0.11 -2.09 7.30 37.16 0.27 -1.82 16 23 H 0.20 3.34 7.80 -54.09 -0.42 2.91 16 24 H 0.08 1.42 3.33 -51.93 -0.17 1.25 16 25 H 0.10 2.21 6.62 -51.93 -0.34 1.87 16 26 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 27 H 0.08 1.38 3.57 -51.93 -0.19 1.19 16 28 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.04 0.58 7.87 -51.93 -0.41 0.17 16 31 H 0.09 1.64 5.69 -51.93 -0.30 1.34 16 32 H 0.33 4.05 8.92 -39.29 -0.35 3.70 16 33 H 0.08 1.11 7.86 -51.93 -0.41 0.70 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 1.59 6.45 -51.96 -0.34 1.25 16 36 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.08 1.89 6.25 -52.39 -0.33 1.57 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -29.90 284.16 -6.11 -36.00 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.86 Total: 8.54 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 0.06 Total: -5.96 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.60 Total: -43.46 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.06 Total: -14.80 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.04 Total: 15.39 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.90 -6.11 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702221629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.500 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds