Wall clock time and date at job start Mon Mar 30 2020 21:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47118 * 85.23239 * 3 2 1 5 5 C 1.37098 * 120.00449 * 273.28150 * 4 3 2 6 6 H 1.07999 * 120.00554 * 185.45098 * 5 4 3 7 7 C 1.38953 * 119.99629 * 5.45067 * 5 4 3 8 8 N 1.31405 * 119.99908 * 34.11830 * 7 5 4 9 9 Si 1.86801 * 119.99941 * 214.12803 * 7 5 4 10 10 H 1.48498 * 109.47476 * 94.99489 * 9 7 5 11 11 H 1.48502 * 109.46677 * 215.00077 * 9 7 5 12 12 H 1.48503 * 109.47011 * 334.99435 * 9 7 5 13 13 C 1.34786 * 120.00132 * 93.28424 * 4 3 2 14 14 O 1.21296 * 120.00227 * 185.62409 * 13 4 3 15 15 C 1.50702 * 119.99641 * 5.61907 * 13 4 3 16 16 C 1.52991 * 110.28870 * 295.59012 * 15 13 4 17 17 C 1.54379 * 110.32193 * 57.82926 * 15 13 4 18 18 N 1.48562 * 104.59651 * 95.04012 * 17 15 13 19 19 C 1.48561 * 104.22193 * 39.47987 * 18 17 15 20 20 C 1.54259 * 110.32029 * 173.45958 * 15 13 4 21 21 H 1.09004 * 110.31785 * 122.10776 * 20 15 13 22 22 C 1.53000 * 110.32529 * 0.02562 * 20 15 13 23 23 H 4.40631 * 5.51403 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.46605 * 205.23032 * 3 2 1 25 25 H 1.09002 * 109.47319 * 325.23186 * 3 2 1 26 26 H 0.96997 * 119.99937 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47464 * 67.49227 * 16 15 13 28 28 H 1.09006 * 109.46988 * 187.49048 * 16 15 13 29 29 H 1.09001 * 109.47674 * 307.49056 * 16 15 13 30 30 H 1.09003 * 110.41217 * 213.81936 * 17 15 13 31 31 H 1.08999 * 110.41472 * 336.25868 * 17 15 13 32 32 H 1.00903 * 110.99984 * 159.04093 * 18 17 15 33 33 H 1.08999 * 110.41110 * 201.73978 * 19 18 17 34 34 H 1.09006 * 110.51126 * 79.34686 * 19 18 17 35 35 H 1.08995 * 109.47370 * 64.04897 * 22 20 15 36 36 H 1.09003 * 109.46970 * 184.05224 * 22 20 15 37 37 H 1.08997 * 109.46780 * 304.04839 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1139 -1.3764 5 6 3.2994 -1.3507 -1.9446 6 1 3.7417 -1.4395 -2.9258 7 6 2.8975 -2.4898 -1.2579 8 7 1.8402 -2.4485 -0.4786 9 14 3.8603 -4.0799 -1.4424 10 1 4.8463 -4.1926 -0.3377 11 1 2.9259 -5.2330 -1.3916 12 1 4.5740 -4.0782 -2.7446 13 6 3.4216 0.9966 -2.0842 14 8 3.7277 0.9076 -3.2545 15 6 3.3622 2.3488 -1.4216 16 6 1.9292 2.6653 -0.9894 17 6 4.3132 2.3925 -0.2063 18 7 5.5694 2.9837 -0.7351 19 6 5.1093 4.0488 -1.6629 20 6 3.8860 3.4383 -2.3798 21 1 3.1219 4.1987 -2.5421 22 6 4.3065 2.8163 -3.7128 23 1 -1.0499 0.0002 -0.0001 24 1 3.0088 0.9305 0.4381 25 1 3.0098 -0.8434 0.5860 26 1 1.5595 -3.2438 0.0004 27 1 1.6336 1.9886 -0.1876 28 1 1.8757 3.6945 -0.6344 29 1 1.2571 2.5384 -1.8381 30 1 3.8974 3.0235 0.5793 31 1 4.4958 1.3860 0.1701 32 1 6.1289 3.3703 0.0104 33 1 5.8912 4.2893 -2.3832 34 1 4.8184 4.9402 -1.1069 35 1 3.4341 2.3854 -4.2040 36 1 4.7403 3.5854 -4.3519 37 1 5.0447 2.0349 -3.5323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702221629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:25 Heat of formation + Delta-G solvation = 68.672467 kcal Electronic energy + Delta-G solvation = -19787.122133 eV Core-core repulsion = 16953.964074 eV Total energy + Delta-G solvation = -2833.158058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.83774 -38.61445 -37.36293 -34.38452 -33.35435 -32.89455 -31.82631 -28.38685 -27.22147 -26.91703 -25.48821 -23.10539 -21.89511 -20.08345 -19.57111 -18.39267 -17.43336 -17.32317 -16.48362 -16.12018 -15.96313 -15.35247 -14.96157 -14.87032 -14.60472 -14.26718 -13.72795 -13.68186 -13.51633 -13.32914 -12.82485 -12.66290 -12.60380 -12.39293 -12.13807 -12.06697 -11.96517 -11.44323 -11.34867 -10.99850 -10.82787 -10.46083 -9.81780 -9.42492 -9.21105 -8.34005 -5.76133 1.33744 1.42066 1.52817 1.94279 2.19878 2.35422 2.42474 2.97435 3.24067 3.38160 3.58905 3.75671 3.94240 4.04860 4.26859 4.31015 4.42168 4.58084 4.65996 4.70711 4.72386 4.82457 4.90922 4.99056 5.00139 5.11519 5.20397 5.31193 5.45487 5.46072 5.52851 5.76813 5.93861 6.11608 6.51559 6.56519 7.20567 7.24158 7.53548 8.13932 8.62738 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.008952 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.134890 B = 3127.113226 C = 3608.967255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.141 4.141 3 C 0.220 3.780 4 N -0.450 5.450 5 C -0.361 4.361 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.852 5.852 9 Si 0.964 3.036 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.449 3.551 14 O -0.604 6.604 15 C -0.073 4.073 16 C -0.142 4.142 17 C 0.043 3.957 18 N -0.678 5.678 19 C 0.048 3.952 20 C -0.080 4.080 21 H 0.091 0.909 22 C -0.094 4.094 23 H 0.229 0.771 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.271 0.729 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.350 0.650 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.022 0.978 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 11.407 6.334 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.143 4.143 3 C 0.098 3.902 4 N -0.168 5.168 5 C -0.488 4.488 6 H 0.089 0.911 7 C -0.192 4.192 8 N -0.487 5.487 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.240 3.760 14 O -0.490 6.490 15 C -0.077 4.077 16 C -0.199 4.199 17 C -0.086 4.086 18 N -0.309 5.309 19 C -0.081 4.081 20 C -0.099 4.099 21 H 0.109 0.891 22 C -0.151 4.151 23 H 0.246 0.754 24 H 0.129 0.871 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.167 0.833 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.703 10.679 5.401 12.088 hybrid contribution -0.382 -0.821 0.151 0.918 sum 1.321 9.858 5.552 11.390 Atomic orbital electron populations 1.25035 0.96255 1.05248 1.00259 1.23192 0.94788 0.96288 1.00042 1.18735 0.84888 1.02005 0.84571 1.44012 1.56048 1.05212 1.11546 1.19384 1.41835 0.83027 1.04547 0.91136 1.25719 0.95195 1.01339 0.96927 1.70335 1.17996 1.31085 1.29298 0.85385 0.78988 0.78099 0.78642 1.19117 1.20462 1.20589 1.20794 0.82248 0.86295 0.86641 1.90685 1.54245 1.86116 1.18002 1.21358 0.97502 0.92334 0.96491 1.22171 0.92728 1.03414 1.01606 1.23201 0.89819 1.00800 0.94803 1.63608 1.16577 1.30650 1.20046 1.22989 0.96244 0.92970 0.95854 1.21957 0.97608 0.95513 0.94825 0.89086 1.21878 1.01351 0.96302 0.95542 0.75441 0.87126 0.90514 0.91846 0.90859 0.88878 0.94331 0.90083 0.90852 0.83271 0.90031 0.91228 0.94418 0.95929 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.90 19.20 74.32 1.43 -8.47 16 2 C -0.14 -6.16 8.52 31.12 0.27 -5.90 16 3 C 0.22 9.64 4.04 84.58 0.34 9.98 16 4 N -0.45 -23.11 2.51 -645.41 -1.62 -24.73 16 5 C -0.36 -20.80 9.35 84.04 0.79 -20.02 16 6 H 0.07 4.48 7.39 -2.91 -0.02 4.45 16 7 C 0.01 0.72 4.68 84.93 0.40 1.12 16 8 N -0.85 -44.56 9.54 21.66 0.21 -44.35 16 9 Si 0.96 42.80 29.66 68.60 2.04 44.83 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.45 21.98 6.24 87.66 0.55 22.52 16 14 O -0.60 -33.83 10.22 -3.08 -0.03 -33.86 16 15 C -0.07 -2.61 0.68 -52.04 -0.04 -2.64 16 16 C -0.14 -4.47 7.55 71.98 0.54 -3.93 16 17 C 0.04 1.28 5.12 86.45 0.44 1.72 16 18 N -0.68 -18.98 7.62 -500.85 -3.82 -22.80 16 19 C 0.05 1.22 7.01 86.45 0.61 1.83 16 20 C -0.08 -2.57 3.30 -9.90 -0.03 -2.60 16 21 H 0.09 2.51 7.70 -2.38 -0.02 2.49 16 22 C -0.09 -3.75 7.30 71.98 0.53 -3.22 16 23 H 0.23 7.13 7.80 -4.42 -0.03 7.10 16 24 H 0.11 3.97 3.33 -2.39 -0.01 3.96 16 25 H 0.08 3.59 6.62 -2.39 -0.02 3.58 16 26 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 27 H 0.07 2.40 3.57 -2.39 -0.01 2.40 16 28 H 0.09 2.17 8.12 -2.38 -0.02 2.15 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.81 7.87 -2.39 -0.02 1.79 16 31 H 0.07 2.49 5.69 -2.39 -0.01 2.48 16 32 H 0.35 7.35 8.92 -89.69 -0.80 6.55 16 33 H 0.08 2.04 7.86 -2.39 -0.02 2.02 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.04 1.72 6.45 -5.27 -0.03 1.69 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.04 2.12 6.25 -12.22 -0.08 2.04 16 Total: -1.00 -68.60 284.16 2.79 -65.81 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.20 Total: 24.70 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 5.81 Total: -9.61 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -5.23 Total: -91.87 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.03 Total: -33.86 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.04 Total: 44.83 kcal Total: -68.60 2.79 -65.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702221629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.481 kcal (2) G-P(sol) polarization free energy of solvation -68.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds