Wall clock time and date at job start Mon Mar 30 2020 21:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47383 * 326.60860 * 3 2 1 5 5 C 1.37091 * 119.99924 * 95.42577 * 4 3 2 6 6 H 1.08004 * 120.00140 * 219.65442 * 5 4 3 7 7 C 1.38951 * 120.00267 * 39.65811 * 5 4 3 8 8 N 1.31405 * 119.99892 * 24.83818 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 204.83994 * 7 5 4 10 10 H 1.48493 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47021 * 239.99506 * 9 7 5 12 12 H 1.48506 * 109.46996 * 120.00177 * 9 7 5 13 13 C 1.34783 * 119.99844 * 275.42819 * 4 3 2 14 14 O 1.21296 * 119.99737 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99893 * 359.97438 * 13 4 3 16 16 C 1.53002 * 109.46948 * 180.02562 * 15 13 4 17 17 H 1.09000 * 110.28452 * 52.87302 * 16 15 13 18 18 C 1.54377 * 110.32457 * 290.63920 * 16 15 13 19 19 N 1.48567 * 104.59365 * 217.25040 * 18 16 15 20 20 C 1.48558 * 104.22187 * 39.48011 * 19 18 16 21 21 C 1.54260 * 110.32453 * 174.99926 * 16 15 13 22 22 H 1.08999 * 110.32505 * 359.89655 * 21 16 15 23 23 C 1.53009 * 110.32232 * 237.79389 * 21 16 15 24 24 H 4.40646 * 5.51337 * 180.02562 * 4 1 2 25 25 H 1.09006 * 109.46985 * 206.60755 * 3 2 1 26 26 H 1.08996 * 109.47283 * 86.61094 * 3 2 1 27 27 H 0.97008 * 120.00219 * 5.58531 * 8 7 5 28 28 H 1.08999 * 109.47312 * 300.00034 * 15 13 4 29 29 H 1.09000 * 109.47531 * 60.00025 * 15 13 4 30 30 H 1.08999 * 110.40757 * 336.02560 * 18 16 15 31 31 H 1.08999 * 110.41340 * 98.47211 * 18 16 15 32 32 H 1.00895 * 110.99750 * 159.04166 * 19 18 16 33 33 H 1.08997 * 110.41303 * 201.73799 * 20 19 18 34 34 H 1.08998 * 110.41197 * 79.29512 * 20 19 18 35 35 H 1.08996 * 109.46979 * 59.99807 * 23 21 16 36 36 H 1.09003 * 109.46459 * 180.02562 * 23 21 16 37 37 H 1.08994 * 109.46919 * 299.99844 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1523 0.7601 5 6 3.4698 -2.3110 0.1084 6 1 3.2175 -3.2671 0.5426 7 6 4.1338 -2.2552 -1.1109 8 7 4.8614 -1.2042 -1.4154 9 14 3.9922 -3.6744 -2.3173 10 1 3.1214 -4.7297 -1.7401 11 1 5.3413 -4.2362 -2.5812 12 1 3.4020 -3.1858 -3.5894 13 6 3.2554 -1.0739 2.1003 14 8 3.6598 -2.0287 2.7297 15 6 2.8878 0.1999 2.8166 16 6 3.1161 0.0241 4.3192 17 1 4.1297 -0.3292 4.5087 18 6 2.0837 -0.9619 4.9067 19 7 1.7574 -0.4083 6.2462 20 6 1.7028 1.0606 6.0306 21 6 2.8655 1.3546 5.0586 22 1 2.5816 2.1334 4.3507 23 6 4.1149 1.7741 5.8359 24 1 -1.0498 -0.0004 0.0000 25 1 3.0089 0.9197 0.4603 26 1 3.0094 -0.0599 -1.0258 27 1 5.0012 -0.5043 -0.7584 28 1 3.5090 1.0163 2.4482 29 1 1.8385 0.4304 2.6327 30 1 1.1915 -0.9952 4.2815 31 1 2.5194 -1.9564 5.0023 32 1 0.8706 -0.7586 6.5760 33 1 1.8517 1.5888 6.9723 34 1 0.7509 1.3437 5.5813 35 1 4.9471 1.9029 5.1440 36 1 3.9225 2.7143 6.3527 37 1 4.3647 1.0036 6.5652 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722515023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:41 Heat of formation + Delta-G solvation = 17.400101 kcal Electronic energy + Delta-G solvation = -18705.357662 eV Core-core repulsion = 15869.976267 eV Total energy + Delta-G solvation = -2835.381395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45229 -38.07305 -35.34624 -32.81257 -32.16658 -31.29736 -30.84425 -26.83324 -26.48398 -25.29133 -23.64185 -21.25479 -19.68219 -19.08898 -18.17008 -17.11615 -16.26538 -15.85791 -15.28857 -14.75255 -14.54255 -13.86273 -13.79319 -13.33716 -13.09263 -12.90910 -12.68471 -12.58401 -12.08754 -11.74073 -11.62227 -11.35860 -11.01792 -10.88001 -10.65681 -10.37305 -10.33771 -10.25405 -10.20578 -9.81892 -9.62067 -8.92379 -8.47797 -8.43969 -7.85421 -6.65390 -4.06209 3.18867 3.31509 3.34198 3.35353 3.53861 3.79703 4.22347 4.40889 4.65370 4.77469 4.82051 4.96736 5.11006 5.14843 5.36886 5.51500 5.60452 5.63129 5.67450 5.82530 5.87988 5.92535 5.95003 6.06625 6.12598 6.26984 6.33059 6.41329 6.44819 6.48542 6.65796 6.90716 7.39676 7.90226 8.07102 8.11077 8.60249 8.87521 9.31741 9.80754 10.60415 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028758 B = 0.006058 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.420253 B = 4621.226396 C = 4864.345897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C 0.193 3.807 4 N -0.454 5.454 5 C -0.394 4.394 6 H 0.082 0.918 7 C 0.009 3.991 8 N -0.878 5.878 9 Si 1.078 2.922 10 H -0.284 1.284 11 H -0.285 1.285 12 H -0.282 1.282 13 C 0.467 3.533 14 O -0.563 6.563 15 C -0.132 4.132 16 C -0.066 4.066 17 H 0.087 0.913 18 C 0.049 3.951 19 N -0.668 5.668 20 C 0.039 3.961 21 C -0.096 4.096 22 H 0.073 0.927 23 C -0.138 4.138 24 H 0.211 0.789 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.274 0.726 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.331 0.669 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 7.390 7.805 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.169 4.169 3 C 0.070 3.930 4 N -0.175 5.175 5 C -0.522 4.522 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.513 5.513 9 Si 0.904 3.096 10 H -0.209 1.209 11 H -0.211 1.211 12 H -0.208 1.208 13 C 0.255 3.745 14 O -0.444 6.444 15 C -0.172 4.172 16 C -0.085 4.085 17 H 0.106 0.894 18 C -0.079 4.079 19 N -0.296 5.296 20 C -0.091 4.091 21 C -0.115 4.115 22 H 0.092 0.908 23 C -0.195 4.195 24 H 0.228 0.772 25 H 0.097 0.903 26 H 0.133 0.867 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.164 6.342 6.911 10.707 hybrid contribution -1.661 0.775 0.842 2.017 sum -6.825 7.117 7.753 12.544 Atomic orbital electron populations 1.24688 0.95671 1.02128 1.03028 1.24134 0.95247 0.98841 0.98657 1.18672 0.82819 0.90353 1.01167 1.43520 1.56676 1.12758 1.04508 1.20255 1.39782 0.85706 1.06437 0.90008 1.26434 0.91743 1.02933 0.98639 1.70729 1.30620 1.10636 1.39279 0.83373 0.76697 0.74346 0.75161 1.20911 1.21085 1.20807 1.20420 0.81457 0.89367 0.83209 1.90528 1.48989 1.39343 1.65548 1.21807 1.02096 0.98027 0.95308 1.21661 1.00930 0.93544 0.92409 0.89426 1.22932 0.97231 0.99757 0.88018 1.63747 1.35710 1.04445 1.25690 1.22967 0.96920 0.90219 0.98981 1.21995 0.95520 0.97384 0.96645 0.90844 1.21787 0.96896 1.00722 1.00106 0.77247 0.90340 0.86741 0.91563 0.90084 0.90610 0.94737 0.89206 0.85474 0.90508 0.94645 0.92674 0.93151 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.07 19.25 29.55 0.57 -3.50 16 2 C -0.17 -3.33 12.99 -37.12 -0.48 -3.82 16 3 C 0.19 4.14 4.71 -6.83 -0.03 4.11 16 4 N -0.45 -11.35 2.23 -117.93 -0.26 -11.62 16 5 C -0.39 -11.03 8.79 -14.94 -0.13 -11.16 16 6 H 0.08 2.45 7.84 -52.48 -0.41 2.04 16 7 C 0.01 0.24 4.78 -17.47 -0.08 0.16 16 8 N -0.88 -24.15 12.33 55.50 0.68 -23.47 16 9 Si 1.08 24.06 29.99 -169.99 -5.10 18.96 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.47 11.15 7.37 -10.98 -0.08 11.07 16 14 O -0.56 -15.30 14.84 5.54 0.08 -15.22 16 15 C -0.13 -2.39 3.49 -27.88 -0.10 -2.48 16 16 C -0.07 -1.10 2.31 -89.24 -0.21 -1.31 16 17 H 0.09 1.65 7.48 -51.93 -0.39 1.26 16 18 C 0.05 0.83 6.16 -2.18 -0.01 0.81 16 19 N -0.67 -9.27 7.62 -109.66 -0.84 -10.11 16 20 C 0.04 0.47 7.01 -2.18 -0.02 0.46 16 21 C -0.10 -1.27 3.30 -89.23 -0.29 -1.57 16 22 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 23 C -0.14 -1.66 8.90 37.16 0.33 -1.33 16 24 H 0.21 2.68 7.80 -54.10 -0.42 2.26 16 25 H 0.08 1.45 6.67 -51.93 -0.35 1.10 16 26 H 0.12 2.67 5.82 -51.93 -0.30 2.37 16 27 H 0.27 7.48 7.32 -40.82 -0.30 7.18 16 28 H 0.08 1.34 7.41 -51.93 -0.38 0.95 16 29 H 0.08 1.31 7.37 -51.93 -0.38 0.93 16 30 H 0.03 0.59 7.75 -51.93 -0.40 0.19 16 31 H 0.09 1.72 7.74 -51.93 -0.40 1.31 16 32 H 0.33 3.93 8.92 -39.29 -0.35 3.58 16 33 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -31.18 307.67 -6.72 -37.89 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.39 Total: 7.49 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.54 Total: -8.56 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.41 Total: -45.20 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.10 Total: 18.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.18 -6.72 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722515023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.294 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds