Wall clock time and date at job start Mon Mar 30 2020 21:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08999 * 109.50176 * 91.37167 * 3 2 1 5 5 C 1.53121 * 109.50308 * 331.25808 * 3 2 1 6 6 C 1.53119 * 109.15974 * 182.40056 * 5 3 2 7 7 C 1.53039 * 109.27852 * 57.65608 * 6 5 3 8 8 N 1.46844 * 109.52215 * 300.82160 * 7 6 5 9 9 C 1.46900 * 111.00004 * 185.83742 * 8 7 6 10 10 C 1.50708 * 109.47052 * 169.39767 * 9 8 7 11 11 O 1.21278 * 119.99934 * 353.73585 * 10 9 8 12 12 N 1.34777 * 119.99788 * 173.73323 * 10 9 8 13 13 C 1.46503 * 119.99928 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46939 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00034 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99776 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99813 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99937 * 179.72500 * 16 14 13 19 19 H 1.48501 * 109.47171 * 180.27875 * 18 16 14 20 20 H 1.48498 * 109.47336 * 300.27438 * 18 16 14 21 21 H 1.48499 * 109.47414 * 60.27968 * 18 16 14 22 22 C 1.46852 * 111.20158 * 61.73979 * 8 7 6 23 23 H 4.18785 * 15.03088 * 0.02562 * 4 2 1 24 24 H 1.08997 * 109.52470 * 302.30760 * 5 3 2 25 25 H 1.09001 * 109.52323 * 62.50218 * 5 3 2 26 26 H 1.09003 * 109.50116 * 177.59566 * 6 5 3 27 27 H 1.08998 * 109.50304 * 297.67574 * 6 5 3 28 28 H 1.08991 * 109.46561 * 180.80330 * 7 6 5 29 29 H 1.09004 * 109.46098 * 60.83180 * 7 6 5 30 30 H 1.09000 * 109.47078 * 49.39912 * 9 8 7 31 31 H 1.08999 * 109.46838 * 289.39467 * 9 8 7 32 32 H 0.96997 * 120.00164 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47254 * 59.99730 * 13 12 10 34 34 H 1.09003 * 109.46426 * 299.99712 * 13 12 10 35 35 H 0.97003 * 120.00613 * 359.72686 * 17 16 14 36 36 H 1.08998 * 109.46175 * 58.27135 * 22 8 7 37 37 H 1.08993 * 109.46343 * 178.24251 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 0.0254 -1.0272 5 6 3.1578 -1.2646 0.6941 6 6 4.6877 -1.2271 0.7430 7 6 5.1390 0.0393 1.4742 8 7 4.6248 1.2214 0.7711 9 6 5.1522 2.4575 1.3643 10 6 4.8200 3.6250 0.4709 11 8 4.3061 3.4338 -0.6108 12 7 5.0941 4.8814 0.8742 13 6 4.7707 6.0163 0.0060 14 6 5.1739 7.2995 0.6856 15 1 5.6255 7.2724 1.6663 16 6 4.9663 8.5081 0.0554 17 7 4.4159 8.5411 -1.1386 18 14 5.4591 10.0992 0.9010 19 1 5.1268 11.2499 0.0230 20 1 4.7223 10.2267 2.1840 21 1 6.9198 10.0860 1.1681 22 6 3.1564 1.2314 0.7527 23 1 -1.0499 0.0005 0.0001 24 1 2.7619 -1.3091 1.7086 25 1 2.8327 -2.1429 0.1363 26 1 5.0565 -2.1049 1.2739 27 1 5.0843 -1.2227 -0.2723 28 1 6.2280 0.0762 1.4983 29 1 4.7535 0.0268 2.4937 30 1 6.2341 2.3771 1.4698 31 1 4.7019 2.6108 2.3450 32 1 5.5048 5.0344 1.7395 33 1 3.6984 6.0304 -0.1893 34 1 5.3103 5.9184 -0.9359 35 1 4.1596 7.7149 -1.5776 36 1 2.7803 1.2134 1.7756 37 1 2.8056 2.1342 0.2528 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847024884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:11 Heat of formation + Delta-G solvation = 5.693676 kcal Electronic energy + Delta-G solvation = -17931.413044 eV Core-core repulsion = 15095.524020 eV Total energy + Delta-G solvation = -2835.889024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72707 -38.21326 -34.68300 -34.27834 -32.61404 -32.38348 -30.16876 -28.24783 -26.06984 -23.74411 -23.46921 -22.32893 -20.11332 -19.70897 -18.16577 -17.40815 -16.29987 -15.81520 -15.50679 -14.89365 -14.61010 -14.47216 -13.99187 -13.79680 -13.65392 -13.26247 -12.74780 -12.50385 -12.32361 -12.16516 -11.74450 -11.61065 -11.05811 -11.02819 -10.98397 -10.86199 -10.76194 -10.16319 -10.10746 -10.02403 -9.14891 -8.78681 -8.67827 -8.28909 -7.97641 -6.51530 -4.25184 2.76725 2.83231 3.29794 3.37279 3.39340 3.57307 3.59640 4.12913 4.41472 4.48860 4.72898 4.78709 4.86449 5.11459 5.22009 5.27134 5.31351 5.40806 5.43957 5.48833 5.52800 5.61152 5.74372 5.87196 5.90545 6.00640 6.16343 6.22436 6.88785 7.02347 7.07840 7.22869 7.33585 7.60643 7.66691 8.26826 8.47787 8.71703 9.01321 9.48791 10.88589 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.004161 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.035693 B = 6726.754941 C = 7257.517991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.024 3.976 4 H 0.103 0.897 5 C -0.111 4.111 6 C -0.115 4.115 7 C 0.053 3.947 8 N -0.519 5.519 9 C 0.038 3.962 10 C 0.497 3.503 11 O -0.538 6.538 12 N -0.711 5.711 13 C 0.241 3.759 14 C -0.624 4.624 15 H 0.057 0.943 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 1.076 2.924 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.286 1.286 22 C 0.064 3.936 23 H 0.216 0.784 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.392 0.608 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.273 0.727 36 H 0.030 0.970 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 -18.457 7.581 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C 0.005 3.995 4 H 0.121 0.879 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.075 4.075 8 N -0.243 5.243 9 C -0.094 4.094 10 C 0.281 3.719 11 O -0.415 6.415 12 N -0.360 5.360 13 C 0.120 3.880 14 C -0.662 4.662 15 H 0.075 0.925 16 C -0.183 4.183 17 N -0.536 5.536 18 Si 0.903 3.097 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.064 4.064 23 H 0.233 0.767 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.224 0.776 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.817 -16.939 6.115 18.028 hybrid contribution -0.306 -1.519 1.484 2.146 sum -1.123 -18.459 7.599 19.993 Atomic orbital electron populations 1.24855 0.95853 1.00823 1.01548 1.23012 0.94202 1.00206 0.99925 1.18288 0.83972 0.95288 1.01902 0.87904 1.21605 0.95817 0.96792 1.00628 1.21580 0.95127 0.96616 1.01974 1.22157 1.00120 0.90111 0.95081 1.61469 1.08183 1.00741 1.53928 1.21987 1.01790 0.89647 0.95929 1.20375 0.79738 0.84166 0.87609 1.90646 1.43301 1.85122 1.22463 1.46280 1.61727 1.06139 1.21859 1.19141 0.95646 0.82945 0.90265 1.22067 1.46542 0.91931 1.05670 0.92514 1.25878 0.94282 1.02332 0.95842 1.70756 1.37271 1.31936 1.13649 0.83449 0.76167 0.74980 0.75111 1.20550 1.21313 1.21279 1.22136 0.86742 0.99129 0.98353 0.76682 0.91962 0.91407 0.91117 0.90579 0.90409 0.94895 0.87981 0.92469 0.77575 0.96662 0.96536 0.91689 0.95141 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.56 19.25 29.55 0.57 -1.99 16 2 C -0.17 -2.33 12.56 -37.12 -0.47 -2.80 16 3 C 0.02 0.31 2.73 -93.33 -0.25 0.06 16 4 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 5 C -0.11 -1.12 5.24 -26.61 -0.14 -1.26 16 6 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 7 C 0.05 0.56 5.46 -3.83 -0.02 0.53 16 8 N -0.52 -7.33 4.35 -236.12 -1.03 -8.36 16 9 C 0.04 0.54 5.45 -4.97 -0.03 0.51 16 10 C 0.50 9.91 7.36 -10.98 -0.08 9.83 16 11 O -0.54 -12.87 14.71 5.56 0.08 -12.79 16 12 N -0.71 -15.05 5.55 -61.47 -0.34 -15.40 16 13 C 0.24 6.42 4.74 -5.19 -0.02 6.39 16 14 C -0.62 -17.23 9.28 -34.44 -0.32 -17.55 16 15 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 16 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 17 N -0.90 -27.47 13.65 55.43 0.76 -26.71 16 18 Si 1.08 24.44 29.90 -169.99 -5.08 19.35 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.06 0.95 4.36 -3.83 -0.02 0.93 16 23 H 0.22 1.78 7.80 -54.09 -0.42 1.36 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.72 8.01 -51.93 -0.42 0.31 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 1.24 7.98 -51.93 -0.41 0.82 16 31 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.39 7.13 8.32 -40.82 -0.34 6.79 16 33 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 34 H 0.02 0.48 8.01 -51.93 -0.42 0.07 16 35 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 1.77 6.06 -51.93 -0.31 1.46 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -33.17 311.57 -7.57 -40.73 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.61 Total: 4.49 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.04 Total: -6.02 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.61 Total: -50.46 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.17 -7.57 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847024884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.426 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds