Wall clock time and date at job start Mon Mar 30 2020 21:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08999 * 109.50176 * 91.37167 * 3 2 1 5 5 C 1.53121 * 109.50308 * 331.25808 * 3 2 1 6 6 C 1.53119 * 109.15974 * 182.40056 * 5 3 2 7 7 C 1.53039 * 109.27852 * 57.65608 * 6 5 3 8 8 N 1.46844 * 109.52215 * 300.82160 * 7 6 5 9 9 C 1.46900 * 111.00004 * 185.83742 * 8 7 6 10 10 C 1.50708 * 109.47052 * 169.39767 * 9 8 7 11 11 O 1.21278 * 119.99934 * 353.73585 * 10 9 8 12 12 N 1.34777 * 119.99788 * 173.73323 * 10 9 8 13 13 C 1.46503 * 119.99928 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46939 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00034 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99776 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99813 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99937 * 179.72500 * 16 14 13 19 19 H 1.48501 * 109.47171 * 180.27875 * 18 16 14 20 20 H 1.48498 * 109.47336 * 300.27438 * 18 16 14 21 21 H 1.48499 * 109.47414 * 60.27968 * 18 16 14 22 22 C 1.46852 * 111.20158 * 61.73979 * 8 7 6 23 23 H 4.18785 * 15.03088 * 0.02562 * 4 2 1 24 24 H 1.08997 * 109.52470 * 302.30760 * 5 3 2 25 25 H 1.09001 * 109.52323 * 62.50218 * 5 3 2 26 26 H 1.09003 * 109.50116 * 177.59566 * 6 5 3 27 27 H 1.08998 * 109.50304 * 297.67574 * 6 5 3 28 28 H 1.08991 * 109.46561 * 180.80330 * 7 6 5 29 29 H 1.09004 * 109.46098 * 60.83180 * 7 6 5 30 30 H 1.09000 * 109.47078 * 49.39912 * 9 8 7 31 31 H 1.08999 * 109.46838 * 289.39467 * 9 8 7 32 32 H 0.96997 * 120.00164 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47254 * 59.99730 * 13 12 10 34 34 H 1.09003 * 109.46426 * 299.99712 * 13 12 10 35 35 H 0.97003 * 120.00613 * 359.72686 * 17 16 14 36 36 H 1.08998 * 109.46175 * 58.27135 * 22 8 7 37 37 H 1.08993 * 109.46343 * 178.24251 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 0.0254 -1.0272 5 6 3.1578 -1.2646 0.6941 6 6 4.6877 -1.2271 0.7430 7 6 5.1390 0.0393 1.4742 8 7 4.6248 1.2214 0.7711 9 6 5.1522 2.4575 1.3643 10 6 4.8200 3.6250 0.4709 11 8 4.3061 3.4338 -0.6108 12 7 5.0941 4.8814 0.8742 13 6 4.7707 6.0163 0.0060 14 6 5.1739 7.2995 0.6856 15 1 5.6255 7.2724 1.6663 16 6 4.9663 8.5081 0.0554 17 7 4.4159 8.5411 -1.1386 18 14 5.4591 10.0992 0.9010 19 1 5.1268 11.2499 0.0230 20 1 4.7223 10.2267 2.1840 21 1 6.9198 10.0860 1.1681 22 6 3.1564 1.2314 0.7527 23 1 -1.0499 0.0005 0.0001 24 1 2.7619 -1.3091 1.7086 25 1 2.8327 -2.1429 0.1363 26 1 5.0565 -2.1049 1.2739 27 1 5.0843 -1.2227 -0.2723 28 1 6.2280 0.0762 1.4983 29 1 4.7535 0.0268 2.4937 30 1 6.2341 2.3771 1.4698 31 1 4.7019 2.6108 2.3450 32 1 5.5048 5.0344 1.7395 33 1 3.6984 6.0304 -0.1893 34 1 5.3103 5.9184 -0.9359 35 1 4.1596 7.7149 -1.5776 36 1 2.7803 1.2134 1.7756 37 1 2.8056 2.1342 0.2528 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847024884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:11 Heat of formation + Delta-G solvation = -18.495266 kcal Electronic energy + Delta-G solvation = -17932.461955 eV Core-core repulsion = 15095.524020 eV Total energy + Delta-G solvation = -2836.937935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.04975 -39.56903 -36.44397 -35.56703 -34.44700 -33.51499 -31.12857 -29.83791 -27.76259 -25.05272 -24.68064 -23.91914 -21.43657 -20.97202 -19.43720 -19.04008 -17.86262 -17.10378 -16.80406 -16.35312 -15.80262 -15.67135 -15.57183 -15.21118 -14.81351 -14.61673 -14.28408 -14.13840 -13.99059 -13.33426 -13.10051 -12.95088 -12.70356 -12.53370 -12.07294 -11.91726 -11.84100 -11.66551 -11.13271 -11.04513 -10.96682 -10.76132 -10.68393 -9.95353 -9.33759 -8.80733 -6.56443 1.55459 1.64034 1.69806 1.76680 1.83306 1.84337 2.24722 2.56486 2.92215 3.07401 3.48519 3.78214 3.85687 3.93254 4.06349 4.20860 4.24478 4.28468 4.42606 4.60218 4.67039 4.69970 4.77908 4.93338 4.94454 4.96475 5.06805 5.12343 5.21029 5.40433 5.45464 5.53385 5.86854 6.07183 6.10420 6.30083 6.63674 6.82512 7.24601 7.43656 8.58390 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.004161 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.035693 B = 6726.754941 C = 7257.517991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.217 4.217 3 C 0.024 3.976 4 H 0.082 0.918 5 C -0.103 4.103 6 C -0.112 4.112 7 C 0.052 3.948 8 N -0.540 5.540 9 C 0.051 3.949 10 C 0.492 3.508 11 O -0.584 6.584 12 N -0.707 5.707 13 C 0.255 3.745 14 C -0.630 4.630 15 H 0.077 0.923 16 C -0.033 4.033 17 N -0.930 5.930 18 Si 1.131 2.869 19 H -0.287 1.287 20 H -0.263 1.263 21 H -0.262 1.262 22 C 0.071 3.929 23 H 0.248 0.752 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.409 0.591 33 H -0.021 1.021 34 H -0.019 1.019 35 H 0.253 0.747 36 H 0.038 0.962 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.405 -19.618 10.421 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.218 4.218 3 C 0.005 3.995 4 H 0.100 0.900 5 C -0.141 4.141 6 C -0.149 4.149 7 C -0.075 4.075 8 N -0.265 5.265 9 C -0.079 4.079 10 C 0.279 3.721 11 O -0.465 6.465 12 N -0.358 5.358 13 C 0.131 3.869 14 C -0.668 4.668 15 H 0.096 0.904 16 C -0.232 4.232 17 N -0.566 5.566 18 Si 0.950 3.050 19 H -0.212 1.212 20 H -0.188 1.188 21 H -0.187 1.187 22 C -0.057 4.057 23 H 0.265 0.735 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.153 0.847 31 H 0.102 0.898 32 H 0.245 0.755 33 H -0.003 1.003 34 H -0.001 1.001 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.251 -18.161 9.000 20.271 hybrid contribution -0.698 -1.234 0.553 1.522 sum -0.447 -19.395 9.553 21.625 Atomic orbital electron populations 1.25724 0.96776 0.99312 0.99817 1.23457 0.95066 1.01710 1.01555 1.18257 0.84131 0.96181 1.00881 0.90020 1.21578 0.96539 0.95299 1.00642 1.21608 0.94234 0.97291 1.01808 1.22315 1.01126 0.88578 0.95477 1.61436 1.07628 1.01893 1.55520 1.21948 1.03854 0.87127 0.95020 1.21513 0.77967 0.84945 0.87694 1.90631 1.45031 1.85794 1.24996 1.46052 1.62262 1.05506 1.21958 1.18624 0.92904 0.85280 0.90044 1.22445 1.45833 0.92097 1.06378 0.90443 1.27686 0.93232 1.06736 0.95505 1.70906 1.39606 1.30775 1.15313 0.82786 0.77436 0.70140 0.74688 1.21241 1.18820 1.18683 1.21942 0.87596 0.97884 0.98282 0.73521 0.91244 0.90403 0.88056 0.91572 0.88591 0.93368 0.84720 0.89766 0.75489 1.00305 1.00072 0.93823 0.94345 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.62 19.25 74.32 1.43 -3.19 16 2 C -0.22 -5.92 12.56 31.12 0.39 -5.52 16 3 C 0.02 0.63 2.73 -12.55 -0.03 0.60 16 4 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 5 C -0.10 -1.91 5.24 30.67 0.16 -1.74 16 6 C -0.11 -1.76 6.09 30.65 0.19 -1.57 16 7 C 0.05 0.92 5.46 86.33 0.47 1.39 16 8 N -0.54 -14.62 4.35 -900.93 -3.92 -18.53 16 9 C 0.05 1.37 5.45 85.56 0.47 1.83 16 10 C 0.49 19.91 7.36 87.66 0.65 20.56 16 11 O -0.58 -29.55 14.71 -3.02 -0.04 -29.59 16 12 N -0.71 -30.24 5.55 -466.78 -2.59 -32.83 16 13 C 0.26 14.17 4.74 85.63 0.41 14.58 16 14 C -0.63 -34.96 9.28 25.60 0.24 -34.73 16 15 H 0.08 3.90 7.60 -2.91 -0.02 3.88 16 16 C -0.03 -1.89 5.46 84.66 0.46 -1.43 16 17 N -0.93 -58.55 13.65 21.45 0.29 -58.26 16 18 Si 1.13 48.14 29.90 68.60 2.05 50.19 16 19 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 22 C 0.07 2.13 4.36 86.32 0.38 2.50 16 23 H 0.25 3.58 7.80 -4.42 -0.03 3.55 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.38 8.01 -2.39 -0.02 1.36 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.14 2.77 7.98 -2.39 -0.02 2.76 16 31 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 32 H 0.41 14.39 8.32 -92.71 -0.77 13.61 16 33 H -0.02 -1.29 8.01 -2.39 -0.02 -1.31 16 34 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 35 H 0.25 16.57 7.22 -92.71 -0.67 15.90 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 1.92 6.06 -2.39 -0.01 1.91 16 Total: -1.00 -76.65 311.57 1.37 -75.28 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.38 Total: 20.48 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.20 Total: -6.74 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -6.21 Total: -109.62 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.04 Total: -29.59 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.05 Total: 50.19 kcal Total: -76.65 1.37 -75.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847024884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.784 kcal (2) G-P(sol) polarization free energy of solvation -76.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds