Wall clock time and date at job start Mon Mar 30 2020 21:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09000 * 109.52342 * 119.13217 * 3 2 1 5 5 C 1.53038 * 109.50036 * 239.21174 * 3 2 1 6 6 C 1.53043 * 109.54274 * 181.31779 * 5 3 2 7 7 C 1.53192 * 109.30986 * 298.63638 * 6 5 3 8 8 N 1.46927 * 108.89635 * 54.56252 * 7 6 5 9 9 C 1.34775 * 120.63006 * 126.46320 * 8 7 6 10 10 O 1.21577 * 120.00448 * 354.77061 * 9 8 7 11 11 N 1.34787 * 119.99483 * 174.77383 * 9 8 7 12 12 C 1.46492 * 119.99544 * 184.98131 * 11 9 8 13 13 C 1.52998 * 109.47243 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47395 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00205 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99637 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00367 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46819 * 90.00181 * 18 16 14 20 20 H 1.48506 * 109.47243 * 210.00209 * 18 16 14 21 21 H 1.48500 * 109.47018 * 330.00453 * 18 16 14 22 22 C 1.46964 * 118.71288 * 306.64426 * 8 7 6 23 23 H 4.18817 * 15.02727 * 0.02562 * 4 2 1 24 24 H 1.09003 * 109.45995 * 61.29703 * 5 3 2 25 25 H 1.09003 * 109.46387 * 301.34152 * 5 3 2 26 26 H 1.08995 * 109.50073 * 178.68808 * 6 5 3 27 27 H 1.08995 * 109.52223 * 58.60050 * 6 5 3 28 28 H 1.08999 * 109.58654 * 174.41934 * 7 6 5 29 29 H 1.09006 * 109.58855 * 294.70564 * 7 6 5 30 30 H 0.96994 * 120.00235 * 4.97626 * 11 9 8 31 31 H 1.09001 * 109.47539 * 300.00020 * 12 11 9 32 32 H 1.09010 * 109.47453 * 59.99581 * 12 11 9 33 33 H 1.09006 * 109.46896 * 300.00107 * 13 12 11 34 34 H 1.08999 * 109.46941 * 60.00089 * 13 12 11 35 35 H 0.96998 * 119.99509 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.46265 * 293.56560 * 22 8 7 37 37 H 1.09001 * 109.59434 * 173.21430 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0100 0.5010 -0.8974 5 6 3.1565 0.7393 1.2393 6 6 4.6866 0.7691 1.2234 7 6 5.2216 -0.6658 1.2612 8 7 4.6215 -1.4266 0.1567 9 6 5.3986 -2.0935 -0.7196 10 8 6.6086 -1.9926 -0.6584 11 7 4.8341 -2.8723 -1.6638 12 6 5.6780 -3.6820 -2.5459 13 6 4.7946 -4.4665 -3.5180 14 6 5.6627 -5.2990 -4.4259 15 1 6.7371 -5.2717 -4.3198 16 6 5.0854 -6.0964 -5.3912 17 7 3.7769 -6.1301 -5.5200 18 14 6.1614 -7.1289 -6.5161 19 1 6.3839 -8.4623 -5.9013 20 1 5.4883 -7.2954 -7.8293 21 1 7.4675 -6.4500 -6.7118 22 6 3.1580 -1.4429 0.0239 23 1 -1.0500 0.0002 0.0006 24 1 2.8127 0.2243 2.1363 25 1 2.7734 1.7598 1.2374 26 1 5.0489 1.3155 2.0941 27 1 5.0318 1.2623 0.3148 28 1 6.3059 -0.6545 1.1503 29 1 4.9562 -1.1299 2.2111 30 1 3.8691 -2.8966 -1.7592 31 1 6.3471 -3.0302 -3.1077 32 1 6.2664 -4.3779 -1.9477 33 1 4.1258 -5.1184 -2.9559 34 1 4.2060 -3.7710 -4.1162 35 1 3.3707 -6.6908 -6.1993 36 1 2.7222 -1.9713 0.8719 37 1 2.8807 -1.9444 -0.9034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847350830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:19 Heat of formation + Delta-G solvation = 12.492374 kcal Electronic energy + Delta-G solvation = -17898.260726 eV Core-core repulsion = 15062.666516 eV Total energy + Delta-G solvation = -2835.594210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24123 -37.81364 -34.95419 -34.00546 -33.08646 -32.25150 -30.41249 -29.34971 -25.68611 -24.42145 -23.81814 -21.57660 -20.81298 -19.39352 -18.44099 -17.69999 -16.46920 -15.86246 -15.42991 -14.94100 -14.62454 -14.47393 -14.40484 -13.88298 -13.72998 -13.43862 -12.70452 -12.67977 -12.26975 -11.93751 -11.51031 -11.26897 -11.11662 -11.01457 -10.93413 -10.61163 -10.51121 -10.29866 -10.25782 -9.84939 -9.52049 -9.24452 -8.73482 -8.44536 -8.18226 -6.07513 -4.10083 2.56253 2.66599 2.93498 3.31045 3.37085 3.41715 3.53859 4.04075 4.30404 4.45342 4.61929 4.66558 4.78855 4.95386 5.06636 5.27662 5.29654 5.38333 5.56433 5.63037 5.69817 5.77486 5.82990 5.90911 6.09714 6.28320 6.41922 6.59018 6.79191 7.01316 7.17162 7.43897 7.57411 7.64951 7.91620 8.25911 8.37809 8.93497 8.98973 9.54620 11.04223 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028812 B = 0.004343 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.581268 B = 6445.036552 C = 7302.770823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.006 3.994 4 H 0.097 0.903 5 C -0.108 4.108 6 C -0.135 4.135 7 C 0.127 3.873 8 N -0.635 5.635 9 C 0.704 3.296 10 O -0.594 6.594 11 N -0.739 5.739 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.123 3.877 23 H 0.218 0.782 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.392 0.608 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 13.314 13.999 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C -0.013 4.013 4 H 0.115 0.885 5 C -0.146 4.146 6 C -0.173 4.173 7 C 0.004 3.996 8 N -0.374 5.374 9 C 0.405 3.595 10 O -0.473 6.473 11 N -0.394 5.394 12 C 0.016 3.984 13 C -0.025 4.025 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.002 4.002 23 H 0.235 0.765 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.666 13.246 13.912 19.768 hybrid contribution -0.398 -0.592 -0.766 1.046 sum -5.064 12.654 13.146 18.936 Atomic orbital electron populations 1.24913 0.95873 1.00097 1.00817 1.22790 0.93915 1.00936 1.00517 1.18660 0.84622 0.97512 1.00547 0.88486 1.21524 0.95685 1.00502 0.96847 1.21955 0.95056 0.97269 1.03055 1.21428 0.99916 0.90030 0.88241 1.47265 1.05317 1.54226 1.30565 1.15947 0.85127 0.78975 0.79434 1.90871 1.12229 1.68891 1.75302 1.45734 1.10561 1.47088 1.36063 1.21609 0.93618 0.92327 0.90854 1.19327 0.95200 0.94763 0.93199 1.21052 0.93334 1.25222 1.16272 0.92197 1.24994 0.95033 0.96857 0.97395 1.69963 1.09272 1.39784 1.34360 0.86510 0.80549 0.80563 0.79922 1.20568 1.21192 1.19702 1.21535 0.80553 0.95075 1.02989 0.76543 0.91288 0.91323 0.90361 0.91153 0.88623 0.91924 0.77216 0.92667 0.92801 0.96007 0.95997 0.92882 0.90980 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.18 -1.90 12.56 -37.12 -0.47 -2.36 16 3 C 0.01 0.06 2.72 -93.29 -0.25 -0.20 16 4 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.11 -0.91 5.12 -26.69 -0.14 -1.04 16 6 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 7 C 0.13 1.44 6.44 -3.71 -0.02 1.41 16 8 N -0.64 -8.73 2.98 -178.46 -0.53 -9.26 16 9 C 0.70 12.85 8.29 -86.91 -0.72 12.12 16 10 O -0.59 -12.98 15.77 5.30 0.08 -12.89 16 11 N -0.74 -13.70 5.47 -65.23 -0.36 -14.06 16 12 C 0.14 3.05 5.62 -4.05 -0.02 3.03 16 13 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.12 1.39 5.62 -3.69 -0.02 1.37 16 23 H 0.22 1.29 7.80 -54.09 -0.42 0.87 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 1.25 6.99 -51.93 -0.36 0.89 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.39 6.44 5.97 -40.82 -0.24 6.19 16 31 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.00 5.65 -51.93 -0.29 0.71 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -32.49 311.75 -7.70 -40.19 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.51 Total: 1.86 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.79 Total: -1.45 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.15 Total: -48.89 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.49 -7.70 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847350830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.678 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds