Wall clock time and date at job start Mon Mar 30 2020 21:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.43195 * 179.97438 * 146.91848 * 3 2 1 5 5 O 1.21610 * 120.00480 * 6.99308 * 4 3 2 6 6 N 1.34781 * 119.99652 * 186.99176 * 4 3 2 7 7 C 1.46966 * 120.59325 * 359.97438 * 6 4 3 8 8 C 1.52934 * 108.68894 * 235.12136 * 7 6 4 9 9 H 1.08993 * 109.45954 * 70.59457 * 8 7 6 10 10 C 1.53002 * 109.52265 * 190.95532 * 8 7 6 11 11 N 1.46963 * 108.87302 * 310.79280 * 8 7 6 12 12 C 1.36945 * 120.59279 * 235.21293 * 11 8 7 13 13 H 1.08000 * 119.99857 * 126.76644 * 12 11 8 14 14 C 1.38814 * 119.99694 * 306.76430 * 12 11 8 15 15 N 1.31623 * 120.00171 * 337.61928 * 14 12 11 16 16 Si 1.86795 * 119.99844 * 157.61833 * 14 12 11 17 17 H 1.48502 * 109.47066 * 269.99901 * 16 14 12 18 18 H 1.48499 * 109.47090 * 29.99839 * 16 14 12 19 19 H 1.48503 * 109.47281 * 149.99978 * 16 14 12 20 20 C 1.46966 * 118.81315 * 54.93396 * 11 8 7 21 21 H 1.09004 * 109.60741 * 64.77298 * 20 11 8 22 22 C 1.52996 * 109.60939 * 185.10890 * 20 11 8 23 23 C 1.46963 * 120.59473 * 180.02562 * 6 4 3 24 24 H 1.08998 * 109.46991 * 206.08829 * 1 2 3 25 25 H 1.08993 * 109.47067 * 326.09161 * 1 2 3 26 26 H 1.09003 * 109.46878 * 86.08628 * 1 2 3 27 27 H 1.08999 * 109.61045 * 354.99344 * 7 6 4 28 28 H 1.08995 * 109.60892 * 115.33300 * 7 6 4 29 29 H 1.09002 * 109.47370 * 187.81599 * 10 8 7 30 30 H 1.09004 * 109.47173 * 307.81934 * 10 8 7 31 31 H 1.09001 * 109.47199 * 67.81350 * 10 8 7 32 32 H 0.96999 * 119.99831 * 175.07511 * 15 14 12 33 33 H 1.09008 * 109.47169 * 60.00383 * 22 20 11 34 34 H 1.09001 * 109.47405 * 179.97438 * 22 20 11 35 35 H 1.09001 * 109.47547 * 300.00501 * 22 20 11 36 36 H 1.09000 * 109.60965 * 5.00638 * 23 6 4 37 37 H 1.09000 * 109.75237 * 244.57950 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0017 -0.0003 5 8 4.6869 -1.0431 -0.1287 6 7 4.7509 1.1609 0.1416 7 6 4.0282 2.4311 0.2970 8 6 4.5086 3.4034 -0.7813 9 1 4.1438 3.0753 -1.7545 10 6 3.9796 4.8064 -0.4770 11 7 5.9781 3.4205 -0.7854 12 6 6.6619 4.5982 -0.6411 13 1 7.4197 4.6926 0.1226 14 6 6.3808 5.6706 -1.4765 15 7 5.8170 5.4626 -2.6475 16 14 6.8029 7.4090 -0.9388 17 1 5.6498 7.9953 -0.2095 18 1 7.9888 7.3766 -0.0456 19 1 7.1057 8.2371 -2.1337 20 6 6.7008 2.1502 -0.9408 21 1 6.4958 1.7309 -1.9259 22 6 8.2038 2.3927 -0.7888 23 6 6.2204 1.1774 0.1425 24 1 -0.3633 -0.9229 0.4519 25 1 -0.3633 0.8528 0.5733 26 1 -0.3633 0.0701 -1.0253 27 1 2.9577 2.2589 0.1856 28 1 4.2308 2.8489 1.2831 29 1 4.2035 5.4685 -1.3135 30 1 2.9009 4.7632 -0.3264 31 1 4.4575 5.1871 0.4257 32 1 5.5554 6.2154 -3.2004 33 1 8.4070 2.8063 0.1991 34 1 8.7375 1.4493 -0.9040 35 1 8.5377 3.0951 -1.5524 36 1 6.5976 0.1772 -0.0709 37 1 6.5845 1.5056 1.1161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911709383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:27 Heat of formation + Delta-G solvation = 44.922336 kcal Electronic energy + Delta-G solvation = -18974.049941 eV Core-core repulsion = 16139.861999 eV Total energy + Delta-G solvation = -2834.187941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.67279 -37.33678 -34.37314 -34.02703 -32.96812 -31.26880 -29.08798 -27.77578 -26.25447 -25.70308 -23.98236 -21.50260 -20.41148 -19.37871 -17.64886 -16.25005 -15.98594 -15.01029 -14.96169 -14.81865 -14.47619 -13.79904 -13.76058 -13.66971 -13.58198 -13.04951 -12.57665 -12.14260 -11.62730 -11.57445 -11.38359 -11.03547 -10.84401 -10.55631 -10.48888 -10.41066 -10.26248 -10.20947 -10.10259 -9.95712 -9.82697 -9.59866 -8.42675 -8.02950 -6.48456 -5.79658 -3.62267 1.80019 2.45743 3.28227 3.34688 3.37847 3.39373 3.80097 4.28940 4.39841 5.09389 5.22833 5.35363 5.37283 5.38756 5.60289 5.70171 5.71435 5.95276 6.03642 6.11768 6.15427 6.31914 6.40146 6.52347 6.55980 6.67152 6.79063 6.90960 7.07859 7.23035 7.34049 7.38799 7.57397 7.76754 7.82054 8.42450 8.53352 9.10429 9.64268 10.41497 11.08803 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.007115 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.163099 B = 3934.193105 C = 4733.750098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.106 4.106 3 C -0.208 4.208 4 C 0.622 3.378 5 O -0.545 6.545 6 N -0.584 5.584 7 C 0.088 3.912 8 C 0.182 3.818 9 H 0.032 0.968 10 C -0.143 4.143 11 N -0.576 5.576 12 C -0.266 4.266 13 H 0.055 0.945 14 C 0.038 3.962 15 N -0.870 5.870 16 Si 0.881 3.119 17 H -0.282 1.282 18 H -0.274 1.274 19 H -0.290 1.290 20 C 0.155 3.845 21 H 0.031 0.969 22 C -0.126 4.126 23 C 0.100 3.900 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.024 0.976 31 H 0.054 0.946 32 H 0.255 0.745 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 -4.982 5.227 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.109 4.109 3 C -0.211 4.211 4 C 0.411 3.589 5 O -0.425 6.425 6 N -0.313 5.313 7 C -0.036 4.036 8 C 0.075 3.925 9 H 0.050 0.950 10 C -0.201 4.201 11 N -0.300 5.300 12 C -0.395 4.395 13 H 0.073 0.927 14 C -0.164 4.164 15 N -0.509 5.509 16 Si 0.708 3.292 17 H -0.208 1.208 18 H -0.199 1.199 19 H -0.216 1.216 20 C 0.048 3.952 21 H 0.048 0.952 22 C -0.184 4.184 23 C -0.023 4.023 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.965 -5.392 4.973 10.116 hybrid contribution -0.040 1.032 0.166 1.046 sum -7.005 -4.359 5.139 9.721 Atomic orbital electron populations 1.19049 0.83710 1.03655 1.03860 1.22613 0.93809 0.99321 0.95131 1.20824 0.92693 1.02450 1.05148 1.14860 0.82583 0.83940 0.77562 1.90784 1.68677 1.31455 1.51558 1.47909 1.07804 1.06338 1.69270 1.22625 0.95222 0.83985 1.01760 1.20508 0.85352 0.93102 0.93516 0.95043 1.22008 0.96088 0.97771 1.04270 1.43974 0.99270 1.01826 1.84975 1.18691 1.20240 0.89219 1.11355 0.92715 1.25504 0.98200 0.99307 0.93411 1.70227 1.42551 1.30385 1.07766 0.86677 0.78853 0.85518 0.78113 1.20804 1.19888 1.21639 1.20885 0.92455 0.87663 0.94172 0.95169 1.21639 0.94441 0.99741 1.02603 1.22396 0.77558 1.01419 1.00941 0.89577 0.89319 0.89215 0.91160 0.91435 0.89109 0.95746 0.92675 0.93524 0.92835 0.94301 0.91294 0.89827 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.38 10.32 34.37 0.35 -0.03 16 2 C -0.11 -1.47 14.07 -37.12 -0.52 -1.99 16 3 C -0.21 -3.61 11.57 -38.84 -0.45 -4.05 16 4 C 0.62 12.39 7.55 -14.33 -0.11 12.28 16 5 O -0.54 -12.14 16.49 5.27 0.09 -12.05 16 6 N -0.58 -11.38 2.95 -175.66 -0.52 -11.90 16 7 C 0.09 1.65 5.77 -3.82 -0.02 1.63 16 8 C 0.18 4.00 3.25 -67.71 -0.22 3.78 16 9 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 10 C -0.14 -3.05 7.81 37.16 0.29 -2.76 16 11 N -0.58 -13.59 2.76 -157.30 -0.43 -14.02 16 12 C -0.27 -6.68 6.63 -15.06 -0.10 -6.78 16 13 H 0.06 1.40 7.17 -52.49 -0.38 1.02 16 14 C 0.04 0.99 3.19 -17.43 -0.06 0.93 16 15 N -0.87 -23.68 11.80 55.49 0.65 -23.03 16 16 Si 0.88 20.04 29.61 -169.99 -5.03 15.01 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 C 0.15 3.32 3.65 -67.51 -0.25 3.07 16 21 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 22 C -0.13 -2.44 8.19 37.16 0.30 -2.13 16 23 C 0.10 1.93 5.91 -3.62 -0.02 1.91 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.19 6.30 -51.93 -0.33 0.86 16 28 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 29 H 0.09 2.18 4.96 -51.93 -0.26 1.93 16 30 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.05 1.18 7.53 -51.93 -0.39 0.79 16 32 H 0.25 6.71 8.32 -40.82 -0.34 6.37 16 33 H 0.05 1.01 7.47 -51.92 -0.39 0.62 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.47 7.71 -51.93 -0.40 1.07 16 36 H 0.08 1.58 6.99 -51.93 -0.36 1.22 16 37 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 302.49 15.07 4.56 4.56 Total: -1.00 -29.90 302.49 -6.92 -36.82 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.44 Total: -1.24 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.80 Total: 5.85 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.30 Total: -48.95 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.90 -6.92 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911709383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.741 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds