Wall clock time and date at job start Mon Mar 30 2020 21:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00423 * 2 1 4 4 N 1.46895 * 109.47075 * 94.99830 * 3 2 1 5 5 C 1.46904 * 111.00269 * 180.02562 * 4 3 2 6 6 C 1.52997 * 117.50142 * 223.62712 * 5 4 3 7 7 C 1.52997 * 117.50121 * 155.00277 * 5 4 3 8 8 C 1.50706 * 120.00133 * 180.02562 * 2 1 3 9 9 N 1.46889 * 109.47139 * 94.99638 * 8 2 1 10 10 C 1.46908 * 110.99959 * 170.00333 * 9 8 2 11 11 C 1.50701 * 109.46920 * 285.59142 * 10 9 8 12 12 H 1.08002 * 119.99819 * 4.95504 * 11 10 9 13 13 C 1.37873 * 119.99813 * 184.95234 * 11 10 9 14 14 N 1.31522 * 119.99921 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00434 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47236 * 89.99628 * 15 13 11 17 17 H 1.48500 * 109.47287 * 209.99887 * 15 13 11 18 18 H 1.48501 * 109.46734 * 330.00166 * 15 13 11 19 19 C 1.46899 * 111.00200 * 293.95451 * 9 8 2 20 20 C 1.53000 * 117.50080 * 246.87487 * 19 9 8 21 21 C 1.52997 * 117.49972 * 178.21506 * 19 9 8 22 22 H 1.08002 * 120.00162 * 180.02562 * 1 2 3 23 23 H 1.08004 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46652 * 335.00277 * 3 2 1 25 25 H 1.08995 * 109.47720 * 215.00288 * 3 2 1 26 26 H 1.00903 * 111.00404 * 303.96331 * 4 3 2 27 27 H 1.09008 * 115.54411 * 9.33144 * 5 4 3 28 28 H 1.08998 * 117.49767 * 359.97438 * 6 5 4 29 29 H 1.09004 * 117.50133 * 145.01879 * 6 5 4 30 30 H 1.09003 * 117.49568 * 214.98594 * 7 5 4 31 31 H 1.08997 * 117.50016 * 359.97438 * 7 5 4 32 32 H 1.09006 * 109.46899 * 214.99888 * 8 2 1 33 33 H 1.09003 * 109.46838 * 334.99500 * 8 2 1 34 34 H 1.08996 * 109.47091 * 45.58978 * 10 9 8 35 35 H 1.08998 * 109.47345 * 165.59097 * 10 9 8 36 36 H 0.96998 * 119.99700 * 180.02562 * 14 13 11 37 37 H 1.09000 * 115.55054 * 32.54536 * 19 9 8 38 38 H 1.08998 * 117.49770 * 0.02562 * 20 19 9 39 39 H 1.09001 * 117.49676 * 145.01599 * 20 19 9 40 40 H 1.09004 * 117.50136 * 214.97982 * 21 19 9 41 41 H 1.08998 * 117.50262 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.4129 1.6688 1.3797 5 6 3.1497 2.9391 1.4189 6 6 4.3731 3.0183 2.3342 7 6 3.0857 3.7533 2.7126 8 6 2.0635 -1.3051 -0.0006 9 7 2.4128 -1.6682 -1.3804 10 6 3.3461 -2.8024 -1.4061 11 6 4.7179 -2.3335 -0.9943 12 1 4.8637 -1.3162 -0.6623 13 6 5.7866 -3.2032 -1.0414 14 7 6.9837 -2.7941 -0.6816 15 14 5.5346 -4.9626 -1.6162 16 1 5.7295 -5.0357 -3.0865 17 1 6.5167 -5.8492 -0.9420 18 1 4.1570 -5.4015 -1.2772 19 6 1.2082 -1.9598 -2.1690 20 6 1.0043 -3.4010 -2.6407 21 6 1.3990 -2.3152 -3.6449 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9354 0.0004 24 1 1.4386 2.0854 -0.4343 25 1 2.9742 1.1989 -0.5894 26 1 1.5900 1.7102 1.9622 27 1 3.1875 3.4897 0.4788 28 1 4.6310 2.1280 2.9077 29 1 5.2162 3.6211 1.9965 30 1 3.0816 4.8397 2.6238 31 1 2.4965 3.3467 3.5345 32 1 2.9742 -1.1991 0.5889 33 1 1.4386 -2.0857 0.4335 34 1 3.0024 -3.5716 -0.7146 35 1 3.3903 -3.2139 -2.4145 36 1 7.7357 -3.4060 -0.7151 37 1 0.3202 -1.3880 -1.8998 38 1 1.7637 -4.1328 -2.3654 39 1 -0.0179 -3.7771 -2.6820 40 1 0.6363 -1.9775 -4.3466 41 1 2.4182 -2.3323 -4.0308 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231609708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:21 Heat of formation + Delta-G solvation = 85.596420 kcal Electronic energy + Delta-G solvation = -18518.340439 eV Core-core repulsion = 15821.749353 eV Total energy + Delta-G solvation = -2696.591086 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.61954 -37.73033 -35.55106 -33.34322 -32.25026 -31.07090 -27.65037 -25.14712 -24.49544 -22.39359 -22.28247 -21.73955 -21.01836 -19.14928 -18.19848 -17.01989 -15.99192 -15.72835 -15.31783 -14.75646 -14.55640 -14.12815 -13.67803 -13.57837 -13.10767 -12.73525 -12.56677 -12.27211 -11.84932 -11.51022 -11.41130 -11.09655 -11.06565 -10.88309 -10.71681 -10.49479 -10.39159 -10.18229 -10.10272 -9.79994 -9.74206 -9.25809 -8.94229 -8.52345 -8.11553 -7.21422 -6.01078 -3.97664 2.38292 3.29666 3.37401 3.38760 3.91024 4.22782 4.35158 4.44547 4.81495 4.99514 5.05630 5.12735 5.18144 5.30827 5.33980 5.41102 5.47231 5.60854 5.64264 5.68313 5.76148 5.94516 6.04906 6.07387 6.12728 6.15902 6.27199 6.30051 6.43971 6.50330 6.62364 6.81508 6.82283 6.94299 7.10833 7.22961 7.51562 7.64716 7.92446 8.07151 8.69228 9.10084 9.60590 11.12118 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.006794 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.023095 B = 4120.465263 C = 5542.942691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 C 0.099 3.901 4 N -0.650 5.650 5 C 0.020 3.980 6 C -0.166 4.166 7 C -0.199 4.199 8 C 0.096 3.904 9 N -0.488 5.488 10 C 0.161 3.839 11 C -0.505 4.505 12 H 0.083 0.917 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.870 3.130 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.269 1.269 19 C 0.023 3.977 20 C -0.231 4.231 21 C -0.175 4.175 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.030 0.970 25 H 0.093 0.907 26 H 0.337 0.663 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.028 0.972 34 H -0.010 1.010 35 H 0.029 0.971 36 H 0.263 0.737 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 8.043 2.106 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.081 4.081 3 C -0.029 4.029 4 N -0.281 5.281 5 C -0.090 4.090 6 C -0.204 4.204 7 C -0.237 4.237 8 C -0.031 4.031 9 N -0.209 5.209 10 C 0.035 3.965 11 C -0.544 4.544 12 H 0.101 0.899 13 C -0.132 4.132 14 N -0.538 5.538 15 Si 0.698 3.302 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.088 4.088 20 C -0.270 4.270 21 C -0.213 4.213 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.156 0.844 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.046 0.954 34 H 0.008 0.992 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.490 7.993 1.933 14.130 hybrid contribution -1.112 -1.128 -0.233 1.601 sum -12.603 6.865 1.700 14.452 Atomic orbital electron populations 1.23674 0.95352 1.01238 1.04459 1.21716 0.94321 0.95965 0.96090 1.20986 0.99988 0.92677 0.89224 1.60140 1.27730 1.29539 1.10645 1.22338 1.01166 0.91408 0.94136 1.23118 0.91504 1.02362 1.03452 1.23243 1.02955 0.98420 0.99069 1.21050 0.99914 0.91434 0.90677 1.61815 1.09591 1.39288 1.10222 1.20281 0.92324 0.87868 0.96036 1.21038 0.89809 1.00040 1.43470 0.89947 1.24870 0.95110 0.98019 0.95198 1.69896 0.99600 1.35658 1.48649 0.86941 0.78247 0.85774 0.79274 1.20185 1.21186 1.19367 1.22802 0.95311 0.95299 0.95350 1.23566 1.01865 0.94496 1.07067 1.23004 1.02590 1.03117 0.92624 0.88611 0.89068 0.95227 0.88831 0.84354 0.88420 0.88027 0.88943 0.89115 0.88811 0.88126 0.95397 0.99194 0.95325 0.92745 0.86995 0.88337 0.89884 0.89412 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.71 12.27 29.02 0.36 -2.35 16 2 C -0.08 -1.24 4.63 -101.06 -0.47 -1.70 16 3 C 0.10 1.49 5.70 -4.98 -0.03 1.46 16 4 N -0.65 -9.17 6.74 -107.99 -0.73 -9.89 16 5 C 0.02 0.26 6.26 -67.71 -0.42 -0.17 16 6 C -0.17 -2.11 10.46 -26.73 -0.28 -2.39 16 7 C -0.20 -2.11 10.33 -26.73 -0.28 -2.38 16 8 C 0.10 1.84 4.98 -4.98 -0.02 1.81 16 9 N -0.49 -10.20 4.64 -229.52 -1.07 -11.26 16 10 C 0.16 3.90 2.44 -4.97 -0.01 3.88 16 11 C -0.51 -14.39 9.14 -34.44 -0.31 -14.71 16 12 H 0.08 2.57 7.82 -52.49 -0.41 2.16 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 15 Si 0.87 21.66 27.37 -169.99 -4.65 17.01 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.46 6.69 56.52 0.38 -6.08 16 19 C 0.02 0.40 5.82 -67.71 -0.39 0.00 16 20 C -0.23 -3.89 9.56 -26.69 -0.26 -4.14 16 21 C -0.18 -2.92 9.91 -26.70 -0.26 -3.18 16 22 H 0.10 1.21 7.66 -52.49 -0.40 0.81 16 23 H 0.09 1.02 7.99 -52.48 -0.42 0.60 16 24 H 0.03 0.39 7.99 -51.93 -0.41 -0.02 16 25 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 26 H 0.34 4.19 8.68 -39.29 -0.34 3.85 16 27 H 0.10 1.20 7.90 -51.92 -0.41 0.79 16 28 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 2.22 7.21 -51.93 -0.37 1.85 16 33 H 0.03 0.52 7.97 -51.93 -0.41 0.11 16 34 H -0.01 -0.24 7.21 -51.93 -0.37 -0.61 16 35 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.11 1.76 5.70 -51.93 -0.30 1.47 16 38 H 0.10 1.87 6.03 -51.93 -0.31 1.56 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.10 1.81 7.45 -51.93 -0.39 1.42 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -29.94 330.26 -10.10 -40.04 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.92 Total: 8.01 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.48 Total: -21.94 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -1.02 Total: -48.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.65 Total: 17.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.94 -10.10 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231609708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.636 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds