Wall clock time and date at job start Mon Mar 30 2020 21:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00106 * 85.00589 * 12 2 1 14 14 O 1.21584 * 120.00089 * 359.97438 * 13 12 2 15 15 C 1.47612 * 120.00049 * 179.97438 * 13 12 2 16 16 C 1.39704 * 120.06861 * 359.72293 * 15 13 12 17 17 C 1.37787 * 120.00086 * 179.76236 * 16 15 13 18 18 C 1.38831 * 120.14895 * 0.51413 * 17 16 15 19 19 O 1.35805 * 119.92982 * 179.72032 * 18 17 16 20 20 C 1.39401 * 120.14509 * 359.73667 * 18 17 16 21 21 O 1.35997 * 120.00526 * 180.02562 * 20 18 17 22 22 C 1.38143 * 119.99055 * 0.02562 * 20 18 17 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 0.97003 * 120.00040 * 264.99233 * 12 2 1 28 28 H 1.08004 * 119.99973 * 359.97438 * 16 15 13 29 29 H 1.07999 * 119.92422 * 180.23209 * 17 16 15 30 30 H 0.96700 * 113.99997 * 270.02421 * 19 18 17 31 31 H 0.96696 * 114.00875 * 269.98777 * 21 20 18 32 32 H 1.07998 * 120.07046 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8576 1.1613 -2.4119 15 6 2.6395 -0.7141 -3.5622 16 6 2.9780 -2.0681 -3.4996 17 6 3.4330 -2.7174 -4.6265 18 6 3.5663 -2.0265 -5.8233 19 8 4.0204 -2.6695 -6.9299 20 6 3.2352 -0.6741 -5.8915 21 8 3.3664 -0.0002 -7.0655 22 6 2.7739 -0.0185 -4.7665 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 0.7088 1.1615 3.4843 27 1 2.2490 -1.6318 -1.1526 28 1 2.8799 -2.6067 -2.5686 29 1 3.6907 -3.7650 -4.5776 30 1 4.9814 -2.6419 -7.0342 31 1 4.2338 0.4088 -7.1896 32 1 2.5167 1.0292 -4.8180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227023708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:18 Heat of formation + Delta-G solvation = -99.646406 kcal Electronic energy + Delta-G solvation = -17744.274398 eV Core-core repulsion = 14670.265729 eV Total energy + Delta-G solvation = -3074.008669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.40577 -38.85315 -37.12123 -36.28321 -34.86707 -32.48008 -30.52567 -30.00143 -28.29092 -25.29208 -23.76611 -22.79158 -21.18743 -19.72977 -19.07454 -18.14512 -17.17794 -16.40857 -16.02181 -15.32329 -15.10991 -14.91802 -14.36690 -14.20283 -13.83813 -13.30607 -12.99519 -12.49339 -12.21714 -11.97711 -11.69182 -11.62766 -11.14031 -10.97280 -10.77010 -10.39777 -10.34731 -10.26489 -9.23809 -9.08482 -9.01102 -8.69663 -8.58782 -7.96994 -6.15365 -4.25111 0.71763 1.11388 2.98988 3.22465 3.29340 3.31210 3.77404 3.89939 4.01213 4.10931 4.34722 4.74243 5.05843 5.16528 5.19506 5.29597 5.53397 5.74349 6.07404 6.11875 6.26518 6.48617 6.80285 6.93883 7.11279 7.18869 7.38390 7.51336 7.59534 7.65356 7.87354 8.11067 8.57724 8.72690 9.01811 9.42266 10.90658 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.040215 B = 0.004627 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.083751 B = 6050.483136 C = 6526.962700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.699 5.699 13 C 0.541 3.459 14 O -0.548 6.548 15 C -0.112 4.112 16 C -0.080 4.080 17 C -0.138 4.138 18 C 0.093 3.907 19 O -0.489 6.489 20 C 0.070 3.930 21 O -0.486 6.486 22 C -0.076 4.076 23 H 0.027 0.973 24 H 0.091 0.909 25 H 0.016 0.984 26 H 0.265 0.735 27 H 0.388 0.612 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.387 0.613 31 H 0.386 0.614 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 -6.570 -13.746 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.347 5.347 13 C 0.326 3.674 14 O -0.428 6.428 15 C -0.115 4.115 16 C -0.099 4.099 17 C -0.156 4.156 18 C 0.048 3.952 19 O -0.298 6.298 20 C 0.025 3.975 21 O -0.295 6.295 22 C -0.095 4.095 23 H 0.046 0.954 24 H 0.110 0.890 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.222 0.778 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.243 0.757 31 H 0.241 0.759 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.106 -5.890 -13.770 16.174 hybrid contribution 1.373 -0.719 0.957 1.822 sum 7.479 -6.610 -12.813 16.242 Atomic orbital electron populations 1.22087 0.98259 0.99248 1.01038 1.18814 0.91180 0.94084 0.79749 0.93125 1.21192 1.32629 1.13286 0.90260 0.92043 1.24888 0.94780 0.94923 0.99071 1.69905 1.35773 1.22345 1.23954 0.86430 0.79148 0.79269 0.82143 1.20517 1.19851 1.21042 1.46506 1.64283 1.13565 1.10344 1.18089 0.79158 0.86829 0.83294 1.90746 1.51490 1.15573 1.85026 1.20265 1.02145 0.94203 0.94916 1.21333 0.96411 0.93451 0.98691 1.21257 1.02330 1.00798 0.91224 1.18973 0.99702 0.90057 0.86509 1.84853 1.27152 1.75942 1.41892 1.18636 1.03112 0.89776 0.86006 1.84934 1.38568 1.70988 1.35055 1.21497 0.96595 1.01432 0.89987 0.95377 0.89028 0.96537 0.92514 0.77793 0.84475 0.84461 0.75699 0.75901 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.66 2.56 -69.08 -0.18 6.49 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.70 -14.52 5.02 -55.95 -0.28 -14.81 16 13 C 0.54 11.05 7.73 -12.44 -0.10 10.96 16 14 O -0.55 -13.28 16.00 5.29 0.08 -13.20 16 15 C -0.11 -1.78 5.87 -104.97 -0.62 -2.40 16 16 C -0.08 -1.02 9.53 -39.20 -0.37 -1.40 16 17 C -0.14 -1.53 9.96 -39.53 -0.39 -1.92 16 18 C 0.09 1.09 6.72 -38.93 -0.26 0.83 16 19 O -0.49 -4.88 13.27 -33.79 -0.45 -5.33 16 20 C 0.07 0.90 6.71 -39.18 -0.26 0.63 16 21 O -0.49 -5.51 13.28 -34.39 -0.46 -5.97 16 22 C -0.08 -1.12 9.52 -39.06 -0.37 -1.49 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.39 6.84 6.56 -40.82 -0.27 6.57 16 28 H 0.14 1.53 6.39 -52.48 -0.34 1.20 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.39 1.78 9.06 45.56 0.41 2.19 16 31 H 0.39 2.29 9.06 45.56 0.41 2.71 16 32 H 0.15 2.25 7.64 -52.49 -0.40 1.85 16 LS Contribution 284.40 15.07 4.29 4.29 Total: -1.00 -33.45 284.40 -5.51 -38.95 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -1.70 Total: 9.00 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.60 Total: -4.24 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.35 Total: -38.80 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.82 Total: -24.50 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.45 -5.51 -38.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227023708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.692 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds