Wall clock time and date at job start Mon Mar 30 2020 21:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00064 * 2 1 4 4 C 1.38715 * 120.11065 * 0.02644 * 3 2 1 5 5 C 1.38161 * 119.74641 * 180.02562 * 4 3 2 6 6 F 1.35097 * 119.81453 * 180.02562 * 5 4 3 7 7 C 1.38946 * 120.37026 * 359.97438 * 5 4 3 8 8 C 1.37851 * 119.91923 * 359.58037 * 7 5 4 9 9 C 1.38523 * 120.11323 * 180.02562 * 3 2 1 10 10 C 1.50641 * 121.84074 * 180.75794 * 8 7 5 11 11 H 1.09005 * 109.30001 * 102.51354 * 10 8 7 12 12 C 1.50690 * 109.29791 * 222.09539 * 10 8 7 13 13 H 1.08001 * 120.00532 * 0.02562 * 12 10 8 14 14 C 1.37880 * 119.99870 * 179.97438 * 12 10 8 15 15 N 1.31518 * 119.99845 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99971 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47507 * 59.99828 * 16 14 12 18 18 H 1.48504 * 109.46941 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47061 * 299.99393 * 16 14 12 20 20 N 1.46630 * 110.48861 * 342.41108 * 10 8 7 21 21 C 1.47158 * 110.25164 * 52.61535 * 20 10 8 22 22 C 1.50730 * 118.43749 * 179.54361 * 7 5 4 23 23 H 1.09001 * 109.47066 * 299.99460 * 1 2 3 24 24 H 1.09000 * 109.47090 * 59.99739 * 1 2 3 25 25 H 1.09002 * 109.47303 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.12864 * 0.04983 * 4 3 2 27 27 H 1.08002 * 119.80135 * 359.97438 * 9 3 2 28 28 H 0.97002 * 119.99522 * 179.97438 * 15 14 12 29 29 H 1.00897 * 110.99615 * 289.19414 * 20 10 8 30 30 H 1.09002 * 109.62733 * 48.49088 * 21 20 10 31 31 H 1.09000 * 109.62604 * 169.07118 * 21 20 10 32 32 H 1.09005 * 109.38993 * 283.32256 * 22 7 5 33 33 H 1.09002 * 109.38736 * 43.01381 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2927 2.3757 0.0006 5 6 1.9278 3.6027 0.0000 6 9 1.1956 4.7380 0.0011 7 6 3.3154 3.6755 -0.0005 8 6 4.0646 2.5185 0.0082 9 6 3.4292 1.2861 -0.0005 10 6 5.5707 2.5470 0.0249 11 1 5.9239 2.3313 1.0333 12 6 6.0991 1.5010 -0.9223 13 1 5.4127 0.8802 -1.4790 14 6 7.4591 1.3370 -1.0792 15 7 8.2951 2.0939 -0.4025 16 14 8.1143 0.0408 -2.2540 17 1 7.6265 0.3255 -3.6273 18 1 9.5990 0.0656 -2.2404 19 1 7.6383 -1.2997 -1.8275 20 7 6.0636 3.8657 -0.3852 21 6 5.4276 4.9203 0.4203 22 6 3.9627 5.0367 -0.0117 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2140 2.3237 0.0018 27 1 4.0160 0.3794 -0.0005 28 1 9.2519 1.9783 -0.5126 29 1 5.9080 4.0195 -1.3702 30 1 5.4847 4.6587 1.4769 31 1 5.9350 5.8694 0.2472 32 1 3.9041 5.4571 -1.0157 33 1 3.4391 5.6921 0.6844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075701607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:50 Heat of formation + Delta-G solvation = -57.119473 kcal Electronic energy + Delta-G solvation = -18546.303132 eV Core-core repulsion = 15486.511359 eV Total energy + Delta-G solvation = -3059.791773 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.57783 -39.90025 -38.19260 -35.04765 -33.03823 -31.07243 -29.75906 -28.76947 -26.64151 -25.39101 -22.93189 -22.46687 -21.12071 -19.56701 -17.69458 -16.89318 -16.35831 -15.70741 -15.47860 -15.21492 -15.12604 -14.59757 -14.22417 -13.79891 -13.40417 -13.11055 -12.89843 -12.47050 -12.09701 -11.91243 -11.68868 -11.55211 -11.03365 -10.95890 -10.89149 -10.65857 -10.26744 -10.22909 -9.89261 -9.17767 -8.52459 -8.05820 -7.66231 -7.02831 -5.95270 -4.11171 1.66412 1.76436 3.33579 3.38495 3.41332 3.46750 4.07895 4.43743 4.62652 5.01718 5.13863 5.18157 5.21244 5.28310 5.42843 5.49543 5.61693 5.73414 5.84716 5.96251 6.06703 6.29252 6.44141 6.51154 6.61840 6.66802 6.72168 7.06921 7.22185 7.32049 7.70254 7.84462 8.07430 8.46571 8.81947 9.01125 9.57732 11.08485 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.008419 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.710024 B = 3324.964142 C = 4530.281840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.138 3.862 4 C -0.263 4.263 5 C 0.122 3.878 6 F -0.146 7.146 7 C -0.159 4.159 8 C -0.009 4.009 9 C -0.140 4.140 10 C 0.250 3.750 11 H 0.061 0.939 12 C -0.540 4.540 13 H 0.062 0.938 14 C 0.084 3.916 15 N -0.844 5.844 16 Si 0.887 3.113 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.640 5.640 21 C 0.052 3.948 22 C -0.109 4.109 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.129 0.871 27 H 0.145 0.855 28 H 0.259 0.741 29 H 0.329 0.671 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 0.965 1.199 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.093 3.907 4 C -0.283 4.283 5 C 0.103 3.897 6 F -0.125 7.125 7 C -0.160 4.160 8 C -0.012 4.012 9 C -0.160 4.160 10 C 0.142 3.858 11 H 0.079 0.921 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.124 4.124 15 N -0.478 5.478 16 Si 0.714 3.286 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.267 5.267 21 C -0.078 4.078 22 C -0.148 4.148 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.147 0.853 27 H 0.163 0.837 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.092 0.850 1.642 11.245 hybrid contribution -1.220 -0.293 -1.060 1.642 sum -12.312 0.556 0.583 12.338 Atomic orbital electron populations 1.22993 0.79175 1.03464 1.01097 1.86105 1.20743 1.26881 1.88958 1.18758 0.92323 0.83150 0.96472 1.20820 1.00034 0.91412 1.15985 1.17338 0.88774 0.81065 1.02541 1.91415 1.77457 1.49590 1.93997 1.19634 0.90785 0.97024 1.08569 1.21125 1.00685 0.89752 0.89603 1.20693 0.89980 0.99947 1.05333 1.18307 0.80571 0.88294 0.98660 0.92143 1.20947 0.91739 1.18206 1.26997 0.91994 1.24972 0.97008 0.95181 0.95240 1.70105 1.02230 1.36537 1.38919 0.86766 0.77741 0.82321 0.81739 1.20275 1.21316 1.20205 1.61312 1.57570 1.00911 1.06883 1.22152 0.89500 0.97028 0.99157 1.21150 0.99490 0.92606 1.01561 0.92959 0.92940 0.88523 0.85314 0.83713 0.93134 0.85390 0.91695 0.91742 0.91375 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.82 101.05 0.99 1.30 16 2 O -0.31 -5.06 10.50 -19.42 -0.20 -5.26 16 3 C 0.14 2.49 6.68 -39.30 -0.26 2.23 16 4 C -0.26 -4.43 9.01 -39.43 -0.36 -4.79 16 5 C 0.12 2.22 7.22 -39.35 -0.28 1.94 16 6 F -0.15 -2.53 16.56 2.25 0.04 -2.49 16 7 C -0.16 -3.09 5.78 -104.49 -0.60 -3.70 16 8 C -0.01 -0.19 5.47 -104.64 -0.57 -0.77 16 9 C -0.14 -2.86 8.67 -39.32 -0.34 -3.20 16 10 C 0.25 5.98 2.40 -70.20 -0.17 5.82 16 11 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 12 C -0.54 -14.02 7.84 -34.44 -0.27 -14.29 16 13 H 0.06 1.60 6.69 -52.49 -0.35 1.25 16 14 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 15 N -0.84 -23.43 12.71 55.43 0.70 -22.73 16 16 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 N -0.64 -14.58 5.87 -109.12 -0.64 -15.22 16 21 C 0.05 0.99 6.64 -3.60 -0.02 0.96 16 22 C -0.11 -1.92 5.49 -27.78 -0.15 -2.07 16 23 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 24 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.13 1.81 6.32 -52.49 -0.33 1.48 16 27 H 0.15 3.04 7.05 -52.49 -0.37 2.67 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 29 H 0.33 7.51 8.54 -39.29 -0.34 7.17 16 30 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -27.93 277.68 -6.92 -34.84 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.84 Total: 5.58 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.14 Total: -14.45 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.06 Total: -37.95 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.20 Total: -5.26 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.93 -6.92 -34.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075701607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.275 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds