Wall clock time and date at job start Mon Mar 30 2020 21:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00064 * 2 1 4 4 C 1.38715 * 120.11065 * 0.02644 * 3 2 1 5 5 C 1.38161 * 119.74641 * 180.02562 * 4 3 2 6 6 F 1.35097 * 119.81453 * 180.02562 * 5 4 3 7 7 C 1.38946 * 120.37026 * 359.97438 * 5 4 3 8 8 C 1.37851 * 119.91923 * 359.58037 * 7 5 4 9 9 C 1.38523 * 120.11323 * 180.02562 * 3 2 1 10 10 C 1.50641 * 121.84074 * 180.75794 * 8 7 5 11 11 H 1.09005 * 109.30001 * 102.51354 * 10 8 7 12 12 C 1.50690 * 109.29791 * 222.09539 * 10 8 7 13 13 H 1.08001 * 120.00532 * 0.02562 * 12 10 8 14 14 C 1.37880 * 119.99870 * 179.97438 * 12 10 8 15 15 N 1.31518 * 119.99845 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99971 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47507 * 59.99828 * 16 14 12 18 18 H 1.48504 * 109.46941 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47061 * 299.99393 * 16 14 12 20 20 N 1.46630 * 110.48861 * 342.41108 * 10 8 7 21 21 C 1.47158 * 110.25164 * 52.61535 * 20 10 8 22 22 C 1.50730 * 118.43749 * 179.54361 * 7 5 4 23 23 H 1.09001 * 109.47066 * 299.99460 * 1 2 3 24 24 H 1.09000 * 109.47090 * 59.99739 * 1 2 3 25 25 H 1.09002 * 109.47303 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.12864 * 0.04983 * 4 3 2 27 27 H 1.08002 * 119.80135 * 359.97438 * 9 3 2 28 28 H 0.97002 * 119.99522 * 179.97438 * 15 14 12 29 29 H 1.00897 * 110.99615 * 289.19414 * 20 10 8 30 30 H 1.09002 * 109.62733 * 48.49088 * 21 20 10 31 31 H 1.09000 * 109.62604 * 169.07118 * 21 20 10 32 32 H 1.09005 * 109.38993 * 283.32256 * 22 7 5 33 33 H 1.09002 * 109.38736 * 43.01381 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2927 2.3757 0.0006 5 6 1.9278 3.6027 0.0000 6 9 1.1956 4.7380 0.0011 7 6 3.3154 3.6755 -0.0005 8 6 4.0646 2.5185 0.0082 9 6 3.4292 1.2861 -0.0005 10 6 5.5707 2.5470 0.0249 11 1 5.9239 2.3313 1.0333 12 6 6.0991 1.5010 -0.9223 13 1 5.4127 0.8802 -1.4790 14 6 7.4591 1.3370 -1.0792 15 7 8.2951 2.0939 -0.4025 16 14 8.1143 0.0408 -2.2540 17 1 7.6265 0.3255 -3.6273 18 1 9.5990 0.0656 -2.2404 19 1 7.6383 -1.2997 -1.8275 20 7 6.0636 3.8657 -0.3852 21 6 5.4276 4.9203 0.4203 22 6 3.9627 5.0367 -0.0117 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2140 2.3237 0.0018 27 1 4.0160 0.3794 -0.0005 28 1 9.2519 1.9783 -0.5126 29 1 5.9080 4.0195 -1.3702 30 1 5.4847 4.6587 1.4769 31 1 5.9350 5.8694 0.2472 32 1 3.9041 5.4571 -1.0157 33 1 3.4391 5.6921 0.6844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075701607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:50 Heat of formation + Delta-G solvation = -74.757278 kcal Electronic energy + Delta-G solvation = -18547.067965 eV Core-core repulsion = 15486.511359 eV Total energy + Delta-G solvation = -3060.556606 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.96763 -41.31097 -39.61105 -36.57675 -34.86857 -32.79322 -31.26703 -30.14694 -27.83345 -27.21106 -24.57881 -23.93624 -22.74233 -21.05840 -19.07915 -18.68040 -17.83547 -17.02405 -16.89489 -16.76179 -16.41410 -16.37084 -15.45897 -15.36806 -15.11572 -14.72256 -14.33510 -14.02213 -13.73802 -13.18550 -13.16774 -12.94179 -12.71610 -12.56993 -12.50789 -12.20148 -11.94111 -11.71793 -11.57022 -11.03332 -10.54207 -9.63236 -9.08079 -8.74181 -7.97980 -6.19045 0.18141 0.30315 1.48011 1.48273 1.55597 2.30079 2.46583 2.61282 3.18479 3.25738 3.68434 3.83773 3.96252 4.04267 4.16023 4.35228 4.37035 4.39024 4.45198 4.59349 4.71251 4.85717 4.97339 5.05083 5.11386 5.11797 5.23756 5.38830 5.54975 5.73153 5.79924 6.17818 6.40013 6.60406 7.03295 7.06249 7.52558 9.05300 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.008419 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.710024 B = 3324.964142 C = 4530.281840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.146 3.854 4 C -0.248 4.248 5 C 0.124 3.876 6 F -0.137 7.137 7 C -0.170 4.170 8 C -0.030 4.030 9 C -0.161 4.161 10 C 0.256 3.744 11 H 0.021 0.979 12 C -0.548 4.548 13 H 0.057 0.943 14 C 0.039 3.961 15 N -0.876 5.876 16 Si 0.947 3.053 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.658 5.658 21 C 0.055 3.945 22 C -0.101 4.101 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.124 0.876 26 H 0.165 0.835 27 H 0.125 0.875 28 H 0.257 0.743 29 H 0.326 0.674 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 1.136 0.653 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.101 3.899 4 C -0.267 4.267 5 C 0.104 3.896 6 F -0.115 7.115 7 C -0.171 4.171 8 C -0.032 4.032 9 C -0.180 4.180 10 C 0.148 3.852 11 H 0.039 0.961 12 C -0.587 4.587 13 H 0.075 0.925 14 C -0.166 4.166 15 N -0.511 5.511 16 Si 0.773 3.227 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.199 1.199 20 N -0.285 5.285 21 C -0.075 4.075 22 C -0.139 4.139 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.142 0.858 26 H 0.182 0.818 27 H 0.143 0.857 28 H 0.066 0.934 29 H 0.143 0.857 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.459 1.015 1.098 13.542 hybrid contribution -0.642 -0.384 -0.845 1.128 sum -14.101 0.632 0.254 14.118 Atomic orbital electron populations 1.23420 0.76167 1.05894 1.02409 1.86100 1.23790 1.25895 1.88486 1.18635 0.91521 0.84449 0.95346 1.21108 1.01706 0.90191 1.13735 1.17324 0.88288 0.81831 1.02139 1.91440 1.77038 1.49186 1.93874 1.19762 0.91675 0.97042 1.08658 1.20776 0.99219 0.91094 0.92128 1.20581 0.91511 0.98963 1.06964 1.17907 0.82660 0.88634 0.96031 0.96131 1.21216 0.91908 1.18677 1.26854 0.92523 1.25646 0.97295 0.96957 0.96685 1.70228 1.02216 1.38210 1.40474 0.85810 0.77029 0.80024 0.79825 1.19917 1.21106 1.19885 1.61119 1.58936 1.01391 1.07024 1.22168 0.90797 0.96547 0.97976 1.21082 0.98168 0.92121 1.02566 0.91453 0.91631 0.85807 0.81779 0.85673 0.93352 0.85715 0.92648 0.89724 0.90378 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.39 16 2 O -0.33 -9.95 10.50 -92.39 -0.97 -10.92 16 3 C 0.15 5.06 6.68 22.45 0.15 5.21 16 4 C -0.25 -7.61 9.01 22.37 0.20 -7.41 16 5 C 0.12 4.18 7.22 22.42 0.16 4.34 16 6 F -0.14 -4.26 16.56 44.97 0.74 -3.51 16 7 C -0.17 -6.46 5.78 -19.78 -0.11 -6.57 16 8 C -0.03 -1.29 5.47 -19.87 -0.11 -1.40 16 9 C -0.16 -6.66 8.67 22.44 0.19 -6.47 16 10 C 0.26 12.80 2.40 43.45 0.10 12.91 16 11 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 12 C -0.55 -29.45 7.84 25.60 0.20 -29.25 16 13 H 0.06 3.03 6.69 -2.91 -0.02 3.01 16 14 C 0.04 2.10 5.38 84.65 0.46 2.55 16 15 N -0.88 -50.08 12.71 21.45 0.27 -49.81 16 16 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 N -0.66 -30.72 5.87 -499.16 -2.93 -33.65 16 21 C 0.06 2.07 6.64 86.31 0.57 2.65 16 22 C -0.10 -3.38 5.49 29.91 0.16 -3.22 16 23 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 24 H 0.07 1.06 7.67 -2.39 -0.02 1.04 16 25 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.16 3.81 6.32 -2.91 -0.02 3.79 16 27 H 0.13 5.54 7.05 -2.91 -0.02 5.52 16 28 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.33 15.19 8.54 -89.70 -0.77 14.42 16 30 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 31 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.08 2.49 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -60.98 277.68 2.61 -58.37 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.37 Total: 19.75 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.10 Total: -25.27 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.66 Total: -83.46 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.97 Total: -10.92 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.74 Total: -3.51 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -60.98 2.61 -58.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075701607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.388 kcal (2) G-P(sol) polarization free energy of solvation -60.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds