Wall clock time and date at job start Mon Mar 30 2020 21:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35993 * 117.00101 * 2 1 4 4 C 1.38566 * 120.06987 * 359.97438 * 3 2 1 5 5 C 1.38251 * 119.99732 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14613 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.92748 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47224 * 89.99556 * 7 6 5 9 9 C 1.46903 * 111.00000 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47052 * 34.99701 * 9 8 7 11 11 C 1.53000 * 109.47096 * 275.00251 * 9 8 7 12 12 C 1.50694 * 109.47066 * 155.00016 * 9 8 7 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.38249 * 120.14633 * 0.22824 * 6 5 4 21 21 C 1.38565 * 119.99940 * 359.49383 * 20 6 5 22 22 O 1.35987 * 120.07485 * 180.25310 * 21 20 6 23 23 H 1.09000 * 109.47178 * 60.00183 * 1 2 3 24 24 H 1.09002 * 109.47581 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47360 * 300.00162 * 1 2 3 26 26 H 1.07997 * 120.00323 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.92305 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.46917 * 329.99434 * 7 6 5 29 29 H 1.09001 * 109.47224 * 209.99539 * 7 6 5 30 30 H 1.00896 * 110.99858 * 303.95284 * 8 7 6 31 31 H 1.08998 * 109.47089 * 59.99840 * 11 9 8 32 32 H 1.08995 * 109.47131 * 180.02562 * 11 9 8 33 33 H 1.09002 * 109.47106 * 299.99893 * 11 9 8 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.99730 * 179.74647 * 20 6 5 36 36 H 0.96702 * 114.00072 * 270.28225 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3747 -0.0005 5 6 1.9223 3.6058 0.0000 6 6 3.3028 3.6799 0.0005 7 6 3.9836 5.0243 0.0005 8 7 4.2042 5.4615 1.3855 9 6 4.8670 6.7719 1.4247 10 1 4.5153 7.3820 0.5925 11 6 6.3809 6.5812 1.3131 12 6 4.5419 7.4606 2.7250 13 1 3.9061 6.9738 3.4498 14 6 5.0553 8.7128 2.9892 15 7 5.8290 9.3058 2.1065 16 14 4.6517 9.5667 4.6008 17 1 3.4197 10.3793 4.4355 18 1 4.4347 8.5485 5.6598 19 1 5.7798 10.4512 4.9882 20 6 4.0602 2.5233 -0.0042 21 6 3.4359 1.2863 0.0011 22 8 4.1794 0.1477 0.0016 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2146 2.3196 -0.0014 27 1 1.3341 4.5115 -0.0008 28 1 3.3539 5.7504 -0.5138 29 1 4.9420 4.9463 -0.5128 30 1 3.3372 5.4796 1.9014 31 1 6.6160 6.0831 0.3725 32 1 6.8727 7.5535 1.3426 33 1 6.7326 5.9712 2.1451 34 1 6.1899 10.1869 2.2921 35 1 5.1386 2.5840 -0.0079 36 1 4.3952 -0.1816 -0.8817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067406321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:49 Heat of formation + Delta-G solvation = -57.361727 kcal Electronic energy + Delta-G solvation = -17906.189825 eV Core-core repulsion = 14969.847851 eV Total energy + Delta-G solvation = -2936.341973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35331 -37.95071 -36.97496 -35.41936 -32.67152 -30.61864 -29.92918 -28.28426 -27.10450 -25.30930 -24.01634 -22.53507 -21.04213 -19.75912 -18.45628 -17.53482 -16.58526 -16.43147 -15.86252 -15.04645 -14.82982 -14.44852 -14.26119 -13.98362 -13.62890 -13.43916 -12.88729 -12.33440 -12.13036 -12.04282 -11.63693 -11.22010 -11.21333 -10.98278 -10.86575 -10.71563 -10.50788 -10.24714 -10.11876 -9.91669 -8.84798 -8.73637 -8.48185 -7.97458 -7.26547 -6.02992 -4.09368 1.31037 1.44678 3.17678 3.29401 3.36248 3.40678 3.69897 4.22920 4.40882 4.78038 4.93222 4.98219 5.07526 5.23208 5.28286 5.31175 5.48795 5.58085 5.66869 5.79243 6.12661 6.19421 6.30256 6.34739 6.75377 6.80422 6.90543 7.13958 7.19150 7.22936 7.49537 7.77994 7.78602 7.89293 8.27283 8.38101 8.65934 9.01053 9.56622 11.03322 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.035465 B = 0.004200 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.315810 B = 6664.390003 C = 7046.422153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.091 3.909 4 C -0.195 4.195 5 C -0.084 4.084 6 C -0.084 4.084 7 C 0.099 3.901 8 N -0.682 5.682 9 C 0.210 3.790 10 H 0.002 0.998 11 C -0.125 4.125 12 C -0.518 4.518 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.273 1.273 19 H -0.286 1.286 20 C -0.086 4.086 21 C 0.070 3.930 22 O -0.487 6.487 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.331 0.669 31 H 0.004 0.996 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.137 0.863 36 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 -14.723 -7.553 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.045 3.955 4 C -0.214 4.214 5 C -0.103 4.103 6 C -0.085 4.085 7 C -0.031 4.031 8 N -0.314 5.314 9 C 0.103 3.897 10 H 0.019 0.981 11 C -0.183 4.183 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.198 1.198 19 H -0.212 1.212 20 C -0.105 4.105 21 C 0.025 3.975 22 O -0.295 6.295 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.023 0.977 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.102 -15.023 -6.891 18.407 hybrid contribution -1.151 1.189 0.113 1.659 sum -9.252 -13.834 -6.779 17.970 Atomic orbital electron populations 1.23035 0.78899 1.03647 1.01284 1.86117 1.20881 1.26558 1.89010 1.19407 0.91719 0.84677 0.99681 1.21072 0.99744 0.91893 1.08679 1.20931 0.94236 0.97008 0.98090 1.19886 0.93010 0.95663 0.99970 1.20863 0.98584 0.90447 0.93179 1.60801 1.28299 1.32968 1.09300 1.19141 0.91543 0.82799 0.96209 0.98086 1.21717 0.98681 1.01501 0.96399 1.21263 1.30465 1.01200 1.02748 0.92206 1.24919 0.94945 0.97189 0.96935 1.69899 1.33170 1.15090 1.34750 0.86519 0.77831 0.79410 0.83777 1.20776 1.19821 1.21186 1.21187 1.00801 0.90035 0.98456 1.17737 0.86012 0.86514 1.07210 1.84910 1.71908 1.39829 1.32894 0.92842 0.88465 0.92688 0.85378 0.85603 0.95245 0.90889 0.85134 0.97699 0.90083 0.94910 0.92923 0.84512 0.76421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.98 10.28 -34.22 -0.35 -4.33 16 3 C 0.09 1.26 6.70 -39.12 -0.26 1.00 16 4 C -0.20 -2.48 9.04 -39.46 -0.36 -2.84 16 5 C -0.08 -1.17 9.69 -39.57 -0.38 -1.55 16 6 C -0.08 -1.32 5.39 -104.62 -0.56 -1.89 16 7 C 0.10 1.77 5.61 -4.98 -0.03 1.74 16 8 N -0.68 -14.69 6.29 -109.22 -0.69 -15.38 16 9 C 0.21 5.34 2.60 -68.87 -0.18 5.16 16 10 H 0.00 0.04 7.80 -51.92 -0.40 -0.36 16 11 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 12 C -0.52 -14.28 8.59 -34.44 -0.30 -14.57 16 13 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.09 -1.30 9.63 -39.46 -0.38 -1.68 16 21 C 0.07 1.03 6.72 -39.12 -0.26 0.77 16 22 O -0.49 -6.55 13.29 -34.20 -0.45 -7.00 16 23 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 26 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 27 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 29 H 0.07 1.31 7.38 -51.93 -0.38 0.93 16 30 H 0.33 7.04 8.21 -39.29 -0.32 6.72 16 31 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 32 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 36 H 0.38 3.20 9.06 45.56 0.41 3.62 16 LS Contribution 304.25 15.07 4.58 4.58 Total: -1.00 -31.28 304.25 -6.94 -38.23 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.17 Total: 6.24 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.47 Total: -13.82 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.06 Total: -40.19 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.81 Total: -11.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.28 -6.94 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.136 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds