Wall clock time and date at job start Mon Mar 30 2020 21:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35908 * 116.99947 * 2 1 4 4 C 1.38724 * 120.05571 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94478 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05358 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.94259 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46912 * 340.00028 * 7 6 5 9 9 O 1.42905 * 109.46684 * 220.00111 * 7 6 5 10 10 C 1.52991 * 109.47096 * 100.00155 * 7 6 5 11 11 N 1.46500 * 109.47411 * 184.99873 * 10 7 6 12 12 C 1.46504 * 119.99959 * 270.00282 * 11 10 7 13 13 C 1.36938 * 119.99939 * 89.99636 * 11 10 7 14 14 H 1.08001 * 119.99915 * 342.01788 * 13 11 10 15 15 C 1.38817 * 119.99930 * 161.74446 * 13 11 10 16 16 N 1.31618 * 119.99597 * 346.04174 * 15 13 11 17 17 Si 1.86795 * 119.99854 * 166.04246 * 15 13 11 18 18 H 1.48498 * 109.47014 * 60.00295 * 17 15 13 19 19 H 1.48500 * 109.46950 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47372 * 299.99778 * 17 15 13 21 21 C 1.38266 * 120.11548 * 0.27535 * 6 5 4 22 22 C 1.38148 * 120.05152 * 359.44821 * 21 6 5 23 23 H 1.08997 * 109.47268 * 60.00624 * 1 2 3 24 24 H 1.09002 * 109.47400 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47539 * 300.00315 * 1 2 3 26 26 H 1.08008 * 120.02817 * 359.95146 * 4 3 2 27 27 H 1.08003 * 119.97049 * 180.02562 * 5 4 3 28 28 H 0.96697 * 113.99797 * 299.99517 * 9 7 6 29 29 H 1.09001 * 109.47602 * 65.00032 * 10 7 6 30 30 H 1.09000 * 109.47827 * 305.00031 * 10 7 6 31 31 H 1.08996 * 109.46941 * 264.92191 * 12 11 10 32 32 H 1.08996 * 109.46831 * 24.92505 * 12 11 10 33 33 H 1.08998 * 109.47001 * 144.92713 * 12 11 10 34 34 H 0.97000 * 119.99826 * 179.97438 * 16 15 13 35 35 H 1.07997 * 119.97600 * 179.70422 * 21 6 5 36 36 H 1.08002 * 120.02745 * 180.27300 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 1 5.0112 4.9043 0.3493 9 8 3.2822 5.9125 0.8620 10 6 3.9949 5.5852 -1.4239 11 7 4.7631 6.8324 -1.4476 12 6 4.0910 8.1114 -1.2048 13 6 6.1093 6.8028 -1.6966 14 1 6.6582 5.8789 -1.5887 15 6 6.7674 7.9589 -2.0932 16 7 6.0763 9.0047 -2.4946 17 14 8.6336 8.0303 -2.0572 18 1 9.1865 6.9791 -2.9486 19 1 9.0871 9.3645 -2.5257 20 1 9.1110 7.8039 -0.6694 21 6 1.9209 3.6048 0.0031 22 6 1.2914 2.3752 -0.0022 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 4.0208 0.3800 0.0017 27 1 5.1344 2.5751 0.0000 28 1 2.3610 6.0614 0.6083 29 1 2.9715 5.7828 -1.7428 30 1 4.4531 4.8634 -2.1000 31 1 3.8200 8.5660 -2.1576 32 1 3.1909 7.9423 -0.6138 33 1 4.7622 8.7772 -0.6624 34 1 6.5362 9.8127 -2.7714 35 1 1.3341 4.5114 0.0066 36 1 0.2128 2.3202 -0.0030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:01 Heat of formation + Delta-G solvation = -35.801701 kcal Electronic energy + Delta-G solvation = -18239.224542 eV Core-core repulsion = 15303.817482 eV Total energy + Delta-G solvation = -2935.407060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17808 -38.28886 -36.30511 -34.69483 -31.45007 -31.02440 -30.49135 -27.92120 -26.82006 -25.71369 -23.61313 -22.47790 -21.14693 -20.38846 -18.26374 -16.92921 -16.47648 -16.08097 -15.83177 -14.95257 -14.78226 -14.43182 -14.25700 -13.62874 -13.46089 -13.24852 -12.82795 -12.63267 -12.44892 -12.03156 -11.73664 -11.30266 -11.04215 -10.83916 -10.82030 -10.66621 -10.42336 -10.29928 -10.01577 -9.80516 -9.58285 -8.93713 -8.47913 -8.03432 -6.69912 -5.67067 -3.09295 1.40644 1.48501 3.19538 3.42321 3.47751 3.49051 3.81584 4.53297 4.74608 4.87434 4.95719 4.97325 5.01850 5.04545 5.25484 5.43095 5.47242 5.51340 5.65195 5.80708 5.89646 6.07914 6.09087 6.30375 6.42076 6.49610 6.66884 6.79400 6.88599 6.94559 7.36106 7.53433 7.75348 7.87859 8.16965 8.42621 9.28593 9.92403 10.39467 11.37525 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.040148 B = 0.004591 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.259192 B = 6098.013941 C = 6501.526922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.112 3.888 4 C -0.149 4.149 5 C -0.073 4.073 6 C -0.133 4.133 7 C 0.122 3.878 8 H 0.104 0.896 9 O -0.548 6.548 10 C 0.131 3.869 11 N -0.595 5.595 12 C 0.169 3.831 13 C -0.255 4.255 14 H 0.069 0.931 15 C 0.000 4.000 16 N -0.909 5.909 17 Si 0.905 3.095 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.284 1.284 21 C -0.076 4.076 22 C -0.205 4.205 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.359 0.641 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.000 1.000 33 H 0.045 0.955 34 H 0.252 0.748 35 H 0.122 0.878 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 -14.321 4.880 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.068 3.932 4 C -0.167 4.167 5 C -0.091 4.091 6 C -0.134 4.134 7 C 0.060 3.940 8 H 0.122 0.878 9 O -0.352 6.352 10 C 0.003 3.997 11 N -0.317 5.317 12 C 0.025 3.975 13 C -0.385 4.385 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.555 5.555 17 Si 0.735 3.265 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.211 1.211 21 C -0.095 4.095 22 C -0.223 4.223 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.206 0.794 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.018 0.982 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.140 0.860 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.566 -14.278 5.097 18.479 hybrid contribution 0.207 0.146 -0.333 0.419 sum -10.359 -14.132 4.764 18.158 Atomic orbital electron populations 1.23005 0.78750 1.03596 1.01310 1.86043 1.21113 1.27247 1.89130 1.18992 0.92382 0.83944 0.97927 1.20394 0.91269 0.98560 1.06510 1.20885 1.00139 0.90823 0.97266 1.20847 0.94057 0.97154 1.01366 1.21883 0.94894 0.82973 0.94254 0.87821 1.86653 1.27182 1.66954 1.54389 1.21329 0.95474 0.90010 0.92924 1.43826 1.05503 1.00618 1.81720 1.20772 0.92809 0.86665 0.97261 1.19182 0.83526 0.96089 1.39670 0.91358 1.24915 0.98006 0.97199 0.99653 1.70103 1.33767 1.04348 1.47240 0.86328 0.85580 0.76755 0.77859 1.21005 1.21659 1.21089 1.20672 0.94100 0.96870 0.97826 1.21138 0.99668 0.92354 1.09167 0.92728 0.88521 0.92802 0.85428 0.85105 0.79439 0.94290 0.92665 0.95897 0.98180 0.93606 0.93770 0.86036 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.84 10.50 -19.45 -0.20 -4.04 16 3 C 0.11 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.15 -1.98 9.99 -39.44 -0.39 -2.37 16 5 C -0.07 -1.04 9.66 -39.61 -0.38 -1.42 16 6 C -0.13 -2.02 4.98 -104.60 -0.52 -2.54 16 7 C 0.12 2.19 3.45 -27.88 -0.10 2.10 16 8 H 0.10 2.05 8.00 -51.93 -0.42 1.64 16 9 O -0.55 -9.96 12.11 -35.23 -0.43 -10.39 16 10 C 0.13 2.68 5.28 -4.05 -0.02 2.66 16 11 N -0.60 -15.19 2.89 -181.12 -0.52 -15.72 16 12 C 0.17 4.30 8.74 59.85 0.52 4.82 16 13 C -0.26 -7.12 9.70 -15.06 -0.15 -7.26 16 14 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 15 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 16 N -0.91 -26.98 10.49 55.49 0.58 -26.40 16 17 Si 0.90 22.19 29.58 -169.99 -5.03 17.16 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.08 -1.02 9.32 -39.60 -0.37 -1.39 16 22 C -0.20 -2.52 9.04 -39.43 -0.36 -2.87 16 23 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 26 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 27 H 0.13 1.71 8.03 -52.48 -0.42 1.29 16 28 H 0.36 5.21 7.49 45.56 0.34 5.55 16 29 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 31 H 0.02 0.62 7.46 -51.93 -0.39 0.23 16 32 H 0.00 -0.01 7.22 -51.93 -0.37 -0.38 16 33 H 0.05 1.27 7.03 -51.93 -0.37 0.90 16 34 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.12 1.40 6.77 -52.49 -0.36 1.04 16 36 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -32.32 300.75 -6.53 -38.85 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.34 Total: 1.95 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.12 Total: -5.94 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.06 Total: -42.12 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.63 Total: -14.43 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.32 -6.53 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.044 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds