Wall clock time and date at job start Mon Mar 30 2020 21:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47102 * 2 1 4 4 N 1.46499 * 109.47525 * 120.00504 * 2 1 3 5 5 C 1.34780 * 119.99587 * 275.00138 * 4 2 1 6 6 O 1.21438 * 120.00236 * 359.97438 * 5 4 2 7 7 C 1.48829 * 119.99962 * 179.97438 * 5 4 2 8 8 O 1.21504 * 120.00062 * 359.97438 * 7 5 4 9 9 N 1.34772 * 120.00233 * 179.97438 * 7 5 4 10 10 C 1.36124 * 120.00494 * 180.02562 * 9 7 5 11 11 H 1.08001 * 119.99236 * 359.97438 * 10 9 7 12 12 C 1.39575 * 120.00364 * 179.97438 * 10 9 7 13 13 N 1.31018 * 120.00432 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00050 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47069 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47357 * 120.00028 * 14 12 10 17 17 H 1.48509 * 109.46920 * 239.99682 * 14 12 10 18 18 C 1.50702 * 109.47012 * 240.00013 * 2 1 3 19 19 C 1.34512 * 125.79146 * 99.99849 * 18 2 1 20 20 C 1.41376 * 106.84688 * 179.75198 * 19 18 2 21 21 C 1.34517 * 106.83881 * 0.37683 * 20 19 18 22 22 O 1.34305 * 125.78962 * 279.98071 * 18 2 1 23 23 H 1.09000 * 109.47201 * 59.99957 * 1 2 3 24 24 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46644 * 299.99809 * 1 2 3 26 26 H 0.97003 * 120.00319 * 94.98893 * 4 2 1 27 27 H 0.97000 * 120.00251 * 359.97438 * 9 7 5 28 28 H 0.96997 * 120.00531 * 179.97438 * 13 12 10 29 29 H 1.08006 * 126.57585 * 359.97438 * 19 18 2 30 30 H 1.07998 * 126.58562 * 180.23597 * 20 19 18 31 31 H 1.08002 * 125.79423 * 179.89440 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8587 1.1600 2.4116 7 6 2.6428 -0.7201 3.5724 8 8 2.9310 -1.8992 3.5180 9 7 2.7720 -0.0477 4.7332 10 6 3.2258 -0.6894 5.8447 11 1 3.4820 -1.7374 5.7962 12 6 3.3601 0.0071 7.0467 13 7 3.0499 1.2787 7.1054 14 14 3.9836 -0.8733 8.5717 15 1 4.2624 -2.2944 8.2436 16 1 5.2303 -0.2204 9.0454 17 1 2.9530 -0.8051 9.6388 18 6 2.0323 -0.7104 -1.2305 19 6 2.4731 -0.1191 -2.3554 20 6 2.8491 -1.1541 -3.2420 21 6 2.6078 -2.3163 -2.6091 22 8 2.1161 -2.0413 -1.3898 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.2490 -1.6319 1.1525 27 1 2.5423 0.8937 4.7766 28 1 3.1429 1.7627 7.9408 29 1 2.5322 0.9428 -2.5436 30 1 3.2507 -1.0348 -4.2374 31 1 2.7839 -3.3030 -3.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035739449.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:14:31 Heat of formation + Delta-G solvation = -82.240345 kcal Electronic energy + Delta-G solvation = -17845.615046 eV Core-core repulsion = 14706.935250 eV Total energy + Delta-G solvation = -3138.679797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.57187 -41.34928 -39.27406 -36.97203 -36.16238 -34.00685 -33.49915 -32.27539 -29.46917 -27.92391 -25.61486 -23.74983 -22.78418 -21.32027 -21.13845 -20.41009 -19.25103 -18.00771 -17.72895 -17.05874 -16.88541 -16.55578 -16.21909 -15.77173 -15.14859 -14.92014 -14.64230 -14.33725 -13.74872 -13.69435 -13.66325 -13.42088 -13.04821 -12.97787 -12.57947 -12.51629 -12.29245 -12.08290 -11.68781 -10.87579 -10.42216 -10.29051 -10.27977 -9.45501 -8.67187 -6.12029 0.54158 0.70896 1.41321 1.45732 1.55580 1.63239 1.83330 2.01096 2.29316 2.34747 3.13891 3.22764 3.52407 3.97005 4.05000 4.08982 4.18070 4.29420 4.60544 4.72305 4.87861 4.98385 5.08249 5.18974 5.21641 5.24737 5.59407 5.66722 6.09537 6.16539 6.33990 6.76470 6.95882 7.25759 7.78376 8.48767 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.045554 B = 0.004342 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.512432 B = 6446.703423 C = 6786.315757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.225 3.775 3 H 0.114 0.886 4 N -0.695 5.695 5 C 0.525 3.475 6 O -0.558 6.558 7 C 0.387 3.613 8 O -0.618 6.618 9 N -0.508 5.508 10 C -0.345 4.345 11 H 0.098 0.902 12 C -0.003 4.003 13 N -0.894 5.894 14 Si 1.010 2.990 15 H -0.265 1.265 16 H -0.265 1.265 17 H -0.265 1.265 18 C -0.044 4.044 19 C -0.196 4.196 20 C -0.223 4.223 21 C -0.037 4.037 22 O -0.191 6.191 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.415 0.585 27 H 0.402 0.598 28 H 0.290 0.710 29 H 0.166 0.834 30 H 0.175 0.825 31 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 -2.781 -16.761 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.121 3.879 3 H 0.132 0.868 4 N -0.348 5.348 5 C 0.309 3.691 6 O -0.436 6.436 7 C 0.172 3.828 8 O -0.508 6.508 9 N -0.142 5.142 10 C -0.475 4.475 11 H 0.116 0.884 12 C -0.208 4.208 13 N -0.531 5.531 14 Si 0.831 3.169 15 H -0.188 1.188 16 H -0.190 1.190 17 H -0.190 1.190 18 C -0.094 4.094 19 C -0.215 4.215 20 C -0.242 4.242 21 C -0.104 4.104 22 O -0.088 6.088 23 H 0.115 0.885 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.252 0.748 27 H 0.236 0.764 28 H 0.100 0.900 29 H 0.183 0.817 30 H 0.193 0.807 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.349 -2.731 -16.413 16.804 hybrid contribution 0.295 -0.020 0.546 0.621 sum -2.054 -2.751 -15.867 16.234 Atomic orbital electron populations 1.22185 0.92242 1.03267 1.03731 1.19618 0.95576 0.95460 0.77230 0.86816 1.45735 1.65807 1.15070 1.08190 1.20029 0.77860 0.86307 0.84934 1.90679 1.51128 1.16274 1.85565 1.19558 0.90014 0.87905 0.85277 1.90556 1.58423 1.16528 1.85311 1.41646 1.51814 1.12961 1.07735 1.20027 1.42784 0.97161 0.87549 0.88385 1.26537 0.95633 0.96203 1.02387 1.69548 1.44008 1.09432 1.30153 0.84637 0.78317 0.78322 0.75611 1.18849 1.19003 1.18983 1.22321 1.07529 0.81284 0.98306 1.21923 1.04066 1.02029 0.93506 1.22193 1.07469 0.91576 1.02968 1.24912 1.00762 1.02298 0.82380 1.84008 1.65548 1.24418 1.34787 0.88468 0.91770 0.92304 0.74847 0.76353 0.90018 0.81687 0.80739 0.74567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.47 71.98 0.68 -3.16 16 2 C 0.22 6.34 3.03 44.25 0.13 6.48 16 3 H 0.11 3.24 7.57 -2.39 -0.02 3.22 16 4 N -0.70 -24.80 5.06 -448.02 -2.27 -27.07 16 5 C 0.53 23.19 7.83 87.08 0.68 23.87 16 6 O -0.56 -25.79 16.13 -3.52 -0.06 -25.85 16 7 C 0.39 20.20 7.82 87.08 0.68 20.88 16 8 O -0.62 -34.46 16.03 -3.73 -0.06 -34.52 16 9 N -0.51 -28.04 5.25 -308.88 -1.62 -29.66 16 10 C -0.35 -19.54 9.67 84.35 0.82 -18.73 16 11 H 0.10 5.73 7.15 -2.91 -0.02 5.71 16 12 C 0.00 -0.16 5.51 85.14 0.47 0.31 16 13 N -0.89 -47.85 13.03 21.76 0.28 -47.57 16 14 Si 1.01 40.73 29.56 68.60 2.03 42.76 16 15 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 16 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 18 C -0.04 -1.12 6.12 24.83 0.15 -0.96 16 19 C -0.20 -4.13 10.80 22.19 0.24 -3.89 16 20 C -0.22 -3.92 10.91 22.19 0.24 -3.67 16 21 C -0.04 -0.65 12.09 66.97 0.81 0.16 16 22 O -0.19 -4.79 10.31 -2.58 -0.03 -4.82 16 23 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.42 14.82 7.78 -92.71 -0.72 14.10 16 27 H 0.40 22.26 7.35 -92.71 -0.68 21.58 16 28 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 29 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.24 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -67.36 286.68 2.97 -64.40 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.22 Total: 41.05 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 4.91 Total: 21.28 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -3.60 Total: -104.30 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -0.14 Total: -65.19 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -67.36 2.97 -64.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035739449.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.844 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds