Wall clock time and date at job start Mon Mar 30 2020 21:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35722 * 117.00311 * 2 1 4 4 C 1.37693 * 120.32732 * 359.97438 * 3 2 1 5 5 C 1.39688 * 120.52965 * 180.02562 * 4 3 2 6 6 S 1.76310 * 130.28865 * 179.97438 * 5 4 3 7 7 C 1.75738 * 90.65720 * 180.02562 * 6 5 4 8 8 O 1.21607 * 124.99428 * 179.97438 * 7 6 5 9 9 O 1.32165 * 110.01166 * 359.97438 * 7 6 5 10 10 C 1.34588 * 117.18258 * 0.02562 * 9 7 6 11 11 C 1.39128 * 127.72732 * 179.97438 * 10 9 7 12 12 C 1.40258 * 120.52543 * 180.02562 * 11 10 9 13 13 C 1.40969 * 120.11027 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00337 * 154.29237 * 13 12 11 15 15 C 1.39841 * 120.00539 * 334.28518 * 13 12 11 16 16 N 1.30943 * 119.99941 * 342.57007 * 15 13 12 17 17 Si 1.86798 * 120.00236 * 162.56997 * 15 13 12 18 18 H 1.48495 * 109.47063 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47157 * 120.00239 * 17 15 13 20 20 H 1.48508 * 109.47093 * 240.00055 * 17 15 13 21 21 H 1.09000 * 109.47478 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47453 * 300.00129 * 1 2 3 23 23 H 1.09001 * 109.47028 * 59.99937 * 1 2 3 24 24 H 1.07999 * 119.74206 * 0.02631 * 4 3 2 25 25 H 1.08001 * 119.73795 * 0.02562 * 11 10 9 26 26 H 0.96995 * 120.00486 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.3019 2.3684 -0.0005 5 6 1.9317 3.6152 -0.0011 6 16 1.2454 5.2392 -0.0024 7 6 2.8562 5.9419 -0.0030 8 8 3.0971 7.1338 -0.0044 9 8 3.7673 4.9844 -0.0016 10 6 3.3238 3.7137 -0.0007 11 6 4.0822 2.5473 0.0003 12 6 3.4577 1.2915 0.0007 13 6 4.2348 0.1153 0.0022 14 1 3.8290 -0.7996 0.4082 15 6 5.5310 0.1328 -0.5221 16 7 5.9057 1.1098 -1.3093 17 14 6.7281 -1.2375 -0.0996 18 1 6.0646 -2.2142 0.8009 19 1 7.1545 -1.9239 -1.3454 20 1 7.9168 -0.6640 0.5812 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2233 2.3132 -0.0005 25 1 5.1605 2.6094 0.0008 26 1 6.8049 1.1222 -1.6728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258134827.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:19 Heat of formation + Delta-G solvation = -89.706123 kcal Electronic energy + Delta-G solvation = -15883.500767 eV Core-core repulsion = 13019.124256 eV Total energy + Delta-G solvation = -2864.376512 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 252.029 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.81624 -40.49093 -39.24955 -37.48802 -35.51153 -32.03436 -30.57713 -28.17834 -27.72089 -26.16308 -23.61198 -22.85525 -20.56405 -19.10481 -19.02753 -18.27747 -18.25003 -17.30761 -16.40250 -16.34751 -16.23311 -15.47029 -15.01549 -14.64794 -14.47021 -14.02882 -13.51697 -13.28152 -13.03360 -12.85953 -12.63768 -12.33806 -12.04462 -11.88266 -11.60234 -11.39762 -11.25720 -10.49543 -9.22827 -9.01731 -8.74724 -6.46023 -0.20093 0.11281 0.40173 0.67801 0.93284 1.40376 1.44117 1.47636 1.59447 2.17523 2.42955 2.73370 3.31412 3.77882 4.33971 4.45767 4.52322 4.68123 4.80633 4.89143 5.01082 5.06419 5.28221 5.35860 5.62136 5.66264 6.05311 6.26306 6.49925 6.62460 6.93278 8.12593 Molecular weight = 252.03amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.008292 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.142300 B = 3376.097455 C = 4548.208643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.322 6.322 3 C 0.037 3.963 4 C -0.113 4.113 5 C -0.291 4.291 6 S 0.034 5.966 7 C 0.459 3.541 8 O -0.462 6.462 9 O -0.270 6.270 10 C 0.077 3.923 11 C -0.168 4.168 12 C 0.101 3.899 13 C -0.439 4.439 14 H 0.098 0.902 15 C 0.033 3.967 16 N -0.802 5.802 17 Si 0.990 3.010 18 H -0.251 1.251 19 H -0.264 1.264 20 H -0.264 1.264 21 H 0.118 0.882 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.147 0.853 25 H 0.124 0.876 26 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 -3.517 1.762 7.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.237 6.237 3 C -0.010 4.010 4 C -0.135 4.135 5 C -0.405 4.405 6 S 0.271 5.729 7 C 0.196 3.804 8 O -0.355 6.355 9 O -0.182 6.182 10 C 0.030 3.970 11 C -0.190 4.190 12 C 0.097 3.903 13 C -0.466 4.466 14 H 0.116 0.884 15 C -0.186 4.186 16 N -0.426 5.426 17 Si 0.810 3.190 18 H -0.174 1.174 19 H -0.189 1.189 20 H -0.189 1.189 21 H 0.136 0.864 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.164 0.836 25 H 0.142 0.858 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.731 -2.453 1.600 7.341 hybrid contribution 1.602 -0.440 -0.103 1.665 sum -5.129 -2.893 1.498 6.076 Atomic orbital electron populations 1.23245 0.77805 1.05025 1.01503 1.85989 1.22081 1.26037 1.89581 1.18969 0.91779 0.84008 1.06278 1.19977 0.99447 0.88280 1.05825 1.21632 0.92875 0.97214 1.28795 1.85024 1.06212 0.97889 1.83806 1.24639 0.89490 0.87674 0.78614 1.90906 1.81316 1.11303 1.52002 1.83030 1.41576 1.15637 1.77973 1.19077 0.92103 0.80432 1.05404 1.20068 0.99141 0.86571 1.13202 1.16985 0.89013 0.92821 0.91485 1.19841 0.97856 0.96638 1.32298 0.88437 1.26957 1.00172 0.99724 0.91714 1.69882 1.20898 1.31654 1.20185 0.85010 0.77066 0.77475 0.79468 1.17411 1.18882 1.18903 0.86353 0.92292 0.92664 0.83552 0.85815 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.60 15 2 O -0.32 -12.44 9.80 -90.45 -0.89 -13.33 15 3 C 0.04 1.59 6.71 22.94 0.15 1.74 15 4 C -0.11 -4.44 9.06 22.49 0.20 -4.23 15 5 C -0.29 -12.28 6.48 22.94 0.15 -12.13 15 6 S 0.03 1.25 23.37 -56.49 -1.32 -0.07 15 7 C 0.46 19.55 8.90 113.37 1.01 20.56 15 8 O -0.46 -20.55 18.05 19.31 0.35 -20.20 15 9 O -0.27 -12.63 10.05 36.73 0.37 -12.26 15 10 C 0.08 3.64 7.03 22.80 0.16 3.80 15 11 C -0.17 -8.41 8.69 22.97 0.20 -8.21 15 12 C 0.10 4.97 5.56 -21.32 -0.12 4.85 15 13 C -0.44 -21.06 8.69 23.33 0.20 -20.86 15 14 H 0.10 4.52 7.66 -2.91 -0.02 4.49 15 15 C 0.03 1.48 5.12 85.21 0.44 1.92 15 16 N -0.80 -38.27 11.00 21.81 0.24 -38.03 15 17 Si 0.99 33.96 29.59 68.60 2.03 35.99 15 18 H -0.25 -8.34 7.11 99.48 0.71 -7.63 15 19 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15 20 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 21 H 0.12 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.06 1.36 7.67 -2.39 -0.02 1.34 15 23 H 0.05 1.32 7.66 -2.39 -0.02 1.30 15 24 H 0.15 4.65 6.27 -2.91 -0.02 4.63 15 25 H 0.12 6.50 6.17 -2.91 -0.02 6.48 15 26 H 0.30 12.73 8.30 -92.71 -0.77 11.96 15 Total: -1.00 -55.69 251.11 5.53 -50.17 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.24 Total: 8.70 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 3.51 Total: -10.97 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.24 Total: -38.03 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.17 Total: -45.78 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 2.03 Total: 35.99 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -55.69 5.53 -50.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258134827.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.538 kcal (2) G-P(sol) polarization free energy of solvation -55.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds