Wall clock time and date at job start Mon Mar 30 2020 21:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30532 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47270 * 239.99896 * 3 2 1 5 5 H 1.48498 * 109.46855 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47044 * 120.00211 * 3 2 1 7 7 C 1.40660 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.38808 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.37943 * 128.19648 * 0.03075 * 9 7 2 11 11 C 1.45435 * 118.16000 * 179.97438 * 10 9 7 12 12 C 1.41742 * 128.15668 * 180.02562 * 11 10 9 13 13 C 1.37692 * 120.50451 * 179.97438 * 12 11 10 14 14 O 1.35903 * 119.53293 * 179.97438 * 13 12 11 15 15 C 1.39053 * 120.92416 * 0.02562 * 13 12 11 16 16 C 1.38729 * 119.42838 * 0.23856 * 15 13 12 17 17 C 1.36611 * 120.00976 * 359.47838 * 16 15 13 18 18 S 1.77431 * 133.32015 * 180.19197 * 17 16 15 19 19 O 1.42099 * 107.69317 * 68.44887 * 18 17 16 20 20 O 1.42091 * 107.69969 * 292.19153 * 18 17 16 21 21 H 0.96999 * 120.00779 * 359.97438 * 1 2 3 22 22 H 1.08003 * 120.91651 * 359.97438 * 10 9 7 23 23 H 1.07998 * 119.74476 * 359.95756 * 12 11 10 24 24 H 0.96698 * 113.99964 * 270.02078 * 14 13 12 25 25 H 1.08002 * 120.28119 * 179.97438 * 15 13 12 26 26 H 1.08001 * 119.99422 * 179.74568 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.0931 1.6965 -1.2125 5 1 1.2743 2.7464 0.0006 6 1 3.0931 1.6964 1.2125 7 6 2.0086 -1.2182 -0.0005 8 1 3.0886 -1.2182 -0.0001 9 6 1.3146 -2.4203 -0.0005 10 6 -0.0508 -2.6169 -0.0006 11 6 -0.5473 -3.9839 -0.0012 12 6 -1.8939 -4.4265 -0.0019 13 6 -2.1875 -5.7717 -0.0029 14 8 -3.4856 -6.1741 -0.0030 15 6 -1.1744 -6.7242 -0.0027 16 6 0.1498 -6.3109 0.0036 17 6 0.4496 -4.9780 -0.0013 18 16 1.9761 -4.0736 -0.0006 19 8 2.6050 -4.2868 -1.2570 20 8 2.6046 -4.2879 1.2556 21 1 -0.4851 0.8400 0.0004 22 1 -0.7321 -1.7790 -0.0003 23 1 -2.6957 -3.7029 -0.0014 24 1 -3.8612 -6.2909 0.8804 25 1 -1.4165 -7.7768 -0.0030 26 1 0.9439 -7.0429 0.0079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259958577.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:10 Heat of formation + Delta-G solvation = -78.979215 kcal Electronic energy + Delta-G solvation = -15907.544506 eV Core-core repulsion = 13043.633148 eV Total energy + Delta-G solvation = -2863.911358 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 252.029 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.95588 -36.59582 -36.12753 -35.24030 -34.84274 -32.47858 -29.73698 -29.17877 -25.93725 -22.51706 -22.05391 -20.33450 -18.43961 -17.73534 -17.39165 -16.35292 -16.02090 -14.96180 -14.82345 -14.79355 -14.09890 -13.51672 -13.15336 -12.71465 -12.63340 -11.97054 -11.92180 -11.75926 -11.39302 -11.24614 -11.14762 -11.08041 -10.79484 -10.39464 -10.03482 -9.78315 -9.36011 -9.20754 -8.37567 -7.86711 -7.32293 -5.00384 1.28279 1.34414 1.88448 2.66256 2.68584 2.73968 3.15671 3.38920 4.02906 4.11160 4.44523 4.51909 4.74324 5.42601 5.69335 5.92259 5.96931 6.11927 6.22338 6.33819 6.66825 6.81340 6.92639 6.95619 7.10922 7.37945 7.47546 7.74734 8.07434 8.11660 8.31210 9.31637 Molecular weight = 252.03amu Principal moments of inertia in cm(-1) A = 0.028536 B = 0.007972 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.971054 B = 3511.575514 C = 4312.451046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.043 3.957 3 Si 0.936 3.064 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.270 4.270 8 H 0.104 0.896 9 C -0.409 4.409 10 C -0.349 4.349 11 C 0.092 3.908 12 C -0.203 4.203 13 C 0.162 3.838 14 O -0.508 6.508 15 C -0.248 4.248 16 C 0.046 3.954 17 C -0.724 4.724 18 S 2.531 3.469 19 O -0.962 6.962 20 O -0.963 6.963 21 H 0.299 0.701 22 H 0.164 0.836 23 H 0.119 0.881 24 H 0.386 0.614 25 H 0.120 0.880 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -0.777 1.658 2.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.185 4.185 3 Si 0.757 3.243 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.295 4.295 8 H 0.122 0.878 9 C -0.506 4.506 10 C -0.374 4.374 11 C 0.089 3.911 12 C -0.223 4.223 13 C 0.118 3.882 14 O -0.319 6.319 15 C -0.268 4.268 16 C 0.027 3.973 17 C -0.814 4.814 18 S 2.717 3.283 19 O -0.959 6.959 20 O -0.960 6.960 21 H 0.111 0.889 22 H 0.181 0.819 23 H 0.137 0.863 24 H 0.241 0.759 25 H 0.138 0.862 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.757 -0.912 1.044 1.579 hybrid contribution -1.159 0.861 0.487 1.523 sum -1.916 -0.051 1.531 2.453 Atomic orbital electron populations 1.69451 1.08545 1.31203 1.23602 1.26677 0.95378 1.03031 0.93435 0.85852 0.80065 0.77194 0.81226 1.17576 1.19133 1.17589 1.19269 0.95573 0.88998 1.25666 0.87817 1.28425 1.03862 1.13696 1.04657 1.21761 0.95800 0.93287 1.26513 1.19545 0.92387 0.92179 0.86942 1.21102 0.95745 0.94326 1.11088 1.18216 0.82629 0.91489 0.95887 1.84750 1.24193 1.89725 1.33184 1.21070 0.92409 0.98505 1.14808 1.19473 0.95525 0.92447 0.89900 1.29911 1.21429 1.02271 1.27744 1.03724 0.73348 0.77296 0.73883 1.93505 1.73882 1.86050 1.42456 1.93500 1.73944 1.86044 1.42480 0.88863 0.81939 0.86326 0.75884 0.86192 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -15.68 10.32 55.59 0.57 -15.11 15 2 C 0.04 0.91 5.51 -17.19 -0.09 0.82 15 3 Si 0.94 15.34 29.57 -169.99 -5.03 10.32 15 4 H -0.25 -4.06 7.11 56.52 0.40 -3.66 15 5 H -0.27 -4.20 7.11 56.52 0.40 -3.80 15 6 H -0.25 -4.05 7.11 56.52 0.40 -3.65 15 7 C -0.27 -6.30 9.42 -38.46 -0.36 -6.66 15 8 H 0.10 2.13 7.86 -52.48 -0.41 1.72 15 9 C -0.41 -10.14 6.30 -39.48 -0.25 -10.39 15 10 C -0.35 -8.73 9.52 -36.83 -0.35 -9.08 15 11 C 0.09 2.18 6.02 -104.73 -0.63 1.55 15 12 C -0.20 -4.34 10.01 -38.44 -0.38 -4.73 15 13 C 0.16 3.14 6.66 -39.48 -0.26 2.87 15 14 O -0.51 -8.24 13.47 -19.43 -0.26 -8.50 15 15 C -0.25 -4.67 10.04 -39.10 -0.39 -5.06 15 16 C 0.05 0.93 10.00 -39.99 -0.40 0.53 15 17 C -0.72 -16.61 6.50 -39.21 -0.25 -16.86 15 18 S 2.53 59.79 6.00 -107.50 -0.65 59.14 15 19 O -0.96 -24.03 18.01 -56.97 -1.03 -25.06 15 20 O -0.96 -23.84 18.01 -56.97 -1.03 -24.87 15 21 H 0.30 5.73 8.29 -40.82 -0.34 5.39 15 22 H 0.16 4.14 5.37 -52.48 -0.28 3.86 15 23 H 0.12 2.37 8.06 -52.49 -0.42 1.94 15 24 H 0.39 4.15 9.06 45.56 0.41 4.56 15 25 H 0.12 1.89 8.06 -52.49 -0.42 1.47 15 26 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 LS Contribution 251.43 15.07 3.79 3.79 Total: -1.00 -30.24 251.43 -7.69 -37.93 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -0.68 Total: 9.38 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: -3.38 Total: -47.01 kcal Atomic # 7 Polarization: -15.68 SS G_CDS: 0.57 Total: -15.11 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -2.31 Total: -58.43 kcal Atomic # 14 Polarization: 15.34 SS G_CDS: -5.03 Total: 10.32 kcal Atomic # 16 Polarization: 59.79 SS G_CDS: -0.65 Total: 59.14 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.24 -7.69 -37.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958577.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.052 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds