Wall clock time and date at job start Mon Mar 30 2020 21:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86801 * 120.00037 * 2 1 4 4 H 1.48499 * 109.47399 * 270.00304 * 3 2 1 5 5 H 1.48508 * 109.46962 * 30.00235 * 3 2 1 6 6 H 1.48500 * 109.47150 * 149.99958 * 3 2 1 7 7 C 1.40020 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00676 * 191.58801 * 7 2 1 9 9 C 1.40942 * 120.00115 * 11.58916 * 7 2 1 10 10 C 1.35832 * 120.91004 * 23.77573 * 9 7 2 11 11 S 1.78021 * 103.77567 * 180.23872 * 10 9 7 12 12 O 1.42095 * 107.68197 * 111.63607 * 11 10 9 13 13 O 1.42106 * 107.68048 * 247.84540 * 11 10 9 14 14 C 1.77384 * 98.96374 * 359.63983 * 11 10 9 15 15 C 1.39676 * 104.39899 * 0.36272 * 14 11 10 16 16 C 1.40745 * 117.02288 * 179.71886 * 15 14 11 17 17 C 1.37552 * 120.79892 * 359.97438 * 16 15 14 18 18 C 1.38211 * 121.00602 * 0.02562 * 17 16 15 19 19 C 1.37329 * 133.37367 * 180.02562 * 14 11 10 20 20 O 1.35900 * 120.13742 * 0.40261 * 19 14 11 21 21 H 0.97006 * 120.00142 * 359.97438 * 1 2 3 22 22 H 1.08004 * 128.11274 * 359.97438 * 10 9 7 23 23 H 1.08001 * 119.59754 * 180.02562 * 16 15 14 24 24 H 1.08002 * 119.49414 * 180.02562 * 17 16 15 25 25 H 1.08002 * 120.38852 * 180.02562 * 18 17 16 26 26 H 0.96694 * 114.00050 * 269.97522 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0465 -1.4000 5 1 1.4393 2.6527 0.7001 6 1 3.5394 1.4402 0.7000 7 6 2.0080 -1.2126 -0.0005 8 1 3.0715 -1.2223 0.1873 9 6 1.3249 -2.4207 -0.2463 10 6 0.1542 -2.4326 -0.9351 11 16 -0.2993 -4.1538 -0.9703 12 8 -1.4560 -4.3120 -0.1603 13 8 -0.1976 -4.5994 -2.3158 14 6 1.0813 -4.8216 -0.0789 15 6 1.8623 -3.7077 0.2374 16 6 3.0442 -3.9411 0.9650 17 6 3.3998 -5.2156 1.3409 18 6 2.6085 -6.3009 1.0149 19 6 1.4355 -6.0945 0.2955 20 8 0.6437 -7.1483 -0.0353 21 1 -0.4850 0.8401 0.0004 22 1 -0.3789 -1.5940 -1.3581 23 1 3.6792 -3.1093 1.2322 24 1 4.3112 -5.3705 1.8993 25 1 2.8970 -7.2973 1.3155 26 1 -0.0316 -7.3554 0.6251 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219066.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:21 Heat of formation + Delta-G solvation = -96.405636 kcal Electronic energy + Delta-G solvation = -16179.414920 eV Core-core repulsion = 13314.747896 eV Total energy + Delta-G solvation = -2864.667024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 252.029 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.89619 -38.47884 -37.86057 -36.67232 -36.55584 -34.30215 -31.23322 -30.16236 -28.08327 -24.41483 -23.74503 -21.90957 -20.16425 -19.55269 -18.33877 -17.87589 -17.40187 -16.75709 -16.71666 -16.37496 -15.84510 -15.51192 -14.83773 -14.35789 -13.84096 -13.61014 -13.43271 -13.07817 -13.04739 -12.88736 -12.87040 -12.71270 -12.28293 -12.05351 -11.60512 -11.39716 -10.89957 -10.77686 -10.17802 -9.29429 -8.83038 -6.93502 -0.45620 -0.25854 0.04700 1.18976 1.37567 1.54270 1.70173 2.10644 2.48824 2.49510 2.82008 3.01110 3.12947 3.66596 3.97199 4.10505 4.20976 4.34354 4.57295 4.76477 4.93710 5.05225 5.14449 5.29309 5.53146 5.76453 5.94685 6.09615 6.44097 6.61801 6.70424 8.09247 Molecular weight = 252.03amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.009153 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.439692 B = 3058.212076 C = 3862.794518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.017 3.983 3 Si 1.002 2.998 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.239 1.239 7 C -0.413 4.413 8 H 0.112 0.888 9 C 0.087 3.913 10 C -0.852 4.852 11 S 2.536 3.464 12 O -1.003 7.003 13 O -1.007 7.007 14 C -0.688 4.688 15 C -0.013 4.013 16 C -0.120 4.120 17 C -0.049 4.049 18 C -0.153 4.153 19 C 0.205 3.795 20 O -0.509 6.509 21 H 0.298 0.702 22 H 0.158 0.842 23 H 0.152 0.848 24 H 0.187 0.813 25 H 0.180 0.820 26 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -4.320 6.335 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.203 4.203 3 Si 0.820 3.180 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.161 1.161 7 C -0.440 4.440 8 H 0.129 0.871 9 C 0.081 3.919 10 C -0.974 4.974 11 S 2.728 3.272 12 O -1.000 7.000 13 O -1.005 7.005 14 C -0.777 4.777 15 C -0.015 4.015 16 C -0.138 4.138 17 C -0.066 4.066 18 C -0.172 4.172 19 C 0.159 3.841 20 O -0.324 6.324 21 H 0.109 0.891 22 H 0.176 0.824 23 H 0.170 0.830 24 H 0.204 0.796 25 H 0.198 0.802 26 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 8.039 -4.744 5.470 10.819 hybrid contribution -0.113 1.222 0.420 1.297 sum 7.926 -3.522 5.890 10.484 Atomic orbital electron populations 1.69943 1.09985 1.31639 1.28265 1.27287 0.95711 1.05848 0.91474 0.84902 0.79334 0.73954 0.79852 1.18751 1.19061 1.16109 1.20241 0.97396 0.90498 1.35869 0.87058 1.17951 0.93034 0.91666 0.89218 1.31108 1.17097 1.16031 1.33117 1.02953 0.73284 0.78078 0.72904 1.93400 1.48410 1.88289 1.69947 1.93403 1.87096 1.83747 1.36205 1.30497 1.23909 1.01220 1.22117 1.20202 0.95579 0.90415 0.95259 1.21588 0.94758 0.99567 0.97922 1.21559 0.99627 0.90140 0.95305 1.22035 0.94064 1.02113 0.98966 1.17404 0.91948 0.82761 0.91972 1.84718 1.49866 1.47217 1.50576 0.89106 0.82423 0.82987 0.79618 0.80242 0.72199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.53 10.77 21.84 0.24 -39.30 15 2 C 0.02 0.81 5.32 85.28 0.45 1.26 15 3 Si 1.00 33.72 29.58 68.60 2.03 35.75 15 4 H -0.26 -8.83 7.11 99.48 0.71 -8.12 15 5 H -0.27 -8.62 7.11 99.48 0.71 -7.92 15 6 H -0.24 -7.23 7.11 99.48 0.71 -6.52 15 7 C -0.41 -19.94 8.85 23.36 0.21 -19.73 15 8 H 0.11 4.62 7.32 -2.91 -0.02 4.60 15 9 C 0.09 4.53 5.62 -20.70 -0.12 4.42 15 10 C -0.85 -47.84 9.93 67.26 0.67 -47.17 15 11 S 2.54 132.70 5.99 -56.49 -0.34 132.36 15 12 O -1.00 -55.48 18.01 -128.19 -2.31 -57.79 15 13 O -1.01 -56.83 18.00 -128.19 -2.31 -59.14 15 14 C -0.69 -30.79 6.42 22.40 0.14 -30.65 15 15 C -0.01 -0.58 5.98 -19.84 -0.12 -0.70 15 16 C -0.12 -3.96 9.71 22.72 0.22 -3.74 15 17 C -0.05 -1.19 9.96 22.10 0.22 -0.97 15 18 C -0.15 -3.99 10.05 22.48 0.23 -3.76 15 19 C 0.21 7.36 6.67 22.27 0.15 7.51 15 20 O -0.51 -16.43 13.50 -92.43 -1.25 -17.68 15 21 H 0.30 13.42 8.30 -92.70 -0.77 12.65 15 22 H 0.16 9.36 6.44 -2.91 -0.02 9.34 15 23 H 0.15 4.31 7.48 -2.91 -0.02 4.29 15 24 H 0.19 2.51 8.06 -2.91 -0.02 2.49 15 25 H 0.18 3.06 8.06 -2.91 -0.02 3.03 15 26 H 0.42 9.18 9.06 -74.06 -0.67 8.50 15 Total: -1.00 -75.68 250.39 -1.31 -76.99 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.57 Total: 22.35 kcal Atomic # 6 Polarization: -95.59 SS G_CDS: 2.05 Total: -93.54 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.24 Total: -39.30 kcal Atomic # 8 Polarization: -128.74 SS G_CDS: -5.86 Total: -134.61 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Atomic # 16 Polarization: 132.70 SS G_CDS: -0.34 Total: 132.36 kcal Total: -75.68 -1.31 -76.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219066.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.415 kcal (2) G-P(sol) polarization free energy of solvation -75.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds