Wall clock time and date at job start Mon Mar 30 2020 21:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31481 * 1 3 3 Si 1.86803 * 119.99618 * 2 1 4 4 H 1.48506 * 109.46829 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47303 * 300.00009 * 3 2 1 6 6 H 1.48495 * 109.47145 * 60.00590 * 3 2 1 7 7 C 1.38747 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00138 * 180.02562 * 7 2 1 9 9 O 1.34796 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.35341 * 116.99974 * 185.06370 * 9 7 2 11 11 C 1.39069 * 120.01258 * 354.38899 * 10 9 7 12 12 C 1.37590 * 120.23333 * 179.71415 * 11 10 9 13 13 C 1.40060 * 120.26209 * 0.55587 * 12 11 10 14 14 C 1.47513 * 119.98996 * 179.74123 * 13 12 11 15 15 O 1.21501 * 120.00243 * 179.97438 * 14 13 12 16 16 O 1.34751 * 119.99691 * 359.97438 * 14 13 12 17 17 C 1.39354 * 120.02247 * 359.72000 * 13 12 11 18 18 C 1.39301 * 119.76260 * 0.02562 * 17 13 12 19 19 C 1.47441 * 120.12816 * 179.97438 * 18 17 13 20 20 O 1.21500 * 119.99880 * 180.02562 * 19 18 17 21 21 O 1.34755 * 119.99783 * 0.02562 * 19 18 17 22 22 H 0.96996 * 120.00291 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.88588 * 359.96940 * 11 10 9 24 24 H 1.08004 * 119.86921 * 180.27513 * 12 11 10 25 25 H 0.96697 * 116.99503 * 180.02562 * 16 14 13 26 26 H 1.08000 * 120.11827 * 180.02562 * 17 13 12 27 27 H 0.96701 * 116.99795 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.7088 1.3465 -0.0006 5 1 1.8899 2.3965 -1.2125 6 1 1.8900 2.3964 1.2125 7 6 2.0086 -1.2016 -0.0005 8 1 3.0886 -1.2016 -0.0001 9 8 1.3346 -2.3690 -0.0005 10 6 2.0678 -3.5017 0.1054 11 6 3.4568 -3.4352 0.0903 12 6 4.2066 -4.5833 0.2035 13 6 3.5769 -5.8286 0.3232 14 6 4.3867 -7.0562 0.4385 15 8 3.8407 -8.1366 0.5428 16 8 5.7320 -6.9793 0.4282 17 6 2.1857 -5.9083 0.3337 18 6 1.4256 -4.7461 0.2245 19 6 -0.0468 -4.8212 0.2342 20 8 -0.7075 -3.8060 0.1383 21 8 -0.6598 -6.0157 0.3495 22 1 -0.4850 0.8400 0.0004 23 1 3.9487 -2.4787 -0.0065 24 1 5.2850 -4.5244 0.1956 25 1 6.2197 -7.8107 0.5060 26 1 1.6986 -6.8678 0.4263 27 1 -1.6268 -6.0145 0.3514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309532418.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:34 Heat of formation + Delta-G solvation = -209.118997 kcal Electronic energy + Delta-G solvation = -17842.997522 eV Core-core repulsion = 14530.690009 eV Total energy + Delta-G solvation = -3312.307514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.70641 -40.89620 -40.23690 -38.15025 -36.92049 -36.86164 -34.52081 -32.52384 -31.29778 -27.74730 -25.58492 -25.07361 -23.10664 -21.66382 -20.07468 -19.42681 -19.05360 -18.53079 -17.99154 -16.76330 -16.71765 -16.45448 -16.41288 -16.21702 -15.58999 -15.40218 -14.71566 -14.52094 -14.05654 -13.63832 -13.35891 -13.18147 -12.70301 -12.68696 -12.46895 -12.38671 -12.07447 -11.86068 -11.52462 -11.21703 -10.95662 -10.16813 -9.38351 -8.59588 -6.29015 -0.21004 -0.01931 1.34994 1.36934 1.51609 1.57151 1.87294 2.09484 2.11561 2.31451 2.72958 3.02475 3.15469 3.88422 4.00903 4.21977 4.26017 4.46469 4.74918 4.90690 4.97361 5.21685 5.31476 5.38642 5.68983 5.70005 5.77740 5.82107 6.78513 7.12775 7.15870 7.51110 8.58752 Molecular weight = 252.06amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.006951 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.880567 B = 4027.453820 C = 5220.967994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C -0.013 4.013 3 Si 1.027 2.973 4 H -0.238 1.238 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.428 4.428 8 H 0.125 0.875 9 O -0.161 6.161 10 C 0.185 3.815 11 C -0.253 4.253 12 C 0.033 3.967 13 C -0.243 4.243 14 C 0.549 3.451 15 O -0.559 6.559 16 O -0.503 6.503 17 C 0.062 3.938 18 C -0.242 4.242 19 C 0.520 3.480 20 O -0.538 6.538 21 O -0.508 6.508 22 H 0.278 0.722 23 H 0.152 0.848 24 H 0.171 0.829 25 H 0.432 0.568 26 H 0.153 0.847 27 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.033 -7.974 0.677 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.215 4.215 3 Si 0.844 3.156 4 H -0.161 1.161 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.502 4.502 8 H 0.142 0.858 9 O -0.060 6.060 10 C 0.125 3.875 11 C -0.271 4.271 12 C 0.015 3.985 13 C -0.245 4.245 14 C 0.397 3.603 15 O -0.453 6.453 16 O -0.316 6.316 17 C 0.044 3.956 18 C -0.245 4.245 19 C 0.367 3.633 20 O -0.429 6.429 21 O -0.322 6.322 22 H 0.088 0.912 23 H 0.169 0.831 24 H 0.188 0.812 25 H 0.293 0.707 26 H 0.171 0.829 27 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 9.464 -7.396 0.616 12.027 hybrid contribution -0.677 0.205 0.014 0.708 sum 8.787 -7.191 0.630 11.372 Atomic orbital electron populations 1.70265 1.08620 1.29560 1.43726 1.26910 0.96727 1.03419 0.94490 0.84427 0.78859 0.73760 0.78513 1.16059 1.19425 1.19457 1.22395 0.93542 0.80753 1.53516 0.85777 1.84096 1.36145 1.12694 1.73037 1.20064 0.91812 0.86561 0.89051 1.21212 0.91321 1.01239 1.13361 1.21523 1.01278 0.89131 0.86596 1.18638 0.92138 0.92137 1.21591 1.20400 0.81104 0.87798 0.71010 1.90848 1.73769 1.31237 1.49424 1.84509 1.18434 1.43667 1.85039 1.21182 0.92197 0.96673 0.85598 1.18107 0.89323 0.92406 1.24620 1.20781 0.89207 0.80742 0.72613 1.91045 1.67247 1.37302 1.47283 1.84497 1.29343 1.32616 1.85760 0.91237 0.83105 0.81186 0.70662 0.82906 0.71297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.82 13.67 21.63 0.30 -52.52 15 2 C -0.01 -0.69 5.49 84.87 0.47 -0.22 15 3 Si 1.03 39.09 29.55 68.60 2.03 41.11 15 4 H -0.24 -7.98 7.11 99.48 0.71 -7.27 15 5 H -0.27 -9.97 7.11 99.48 0.71 -9.27 15 6 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 7 C -0.43 -22.87 9.48 67.94 0.64 -22.22 15 8 H 0.13 5.71 5.19 -2.91 -0.02 5.70 15 9 O -0.16 -9.23 7.81 3.01 0.02 -9.20 15 10 C 0.18 8.66 6.67 23.03 0.15 8.81 15 11 C -0.25 -9.48 9.14 22.32 0.20 -9.28 15 12 C 0.03 0.99 9.60 22.56 0.22 1.20 15 13 C -0.24 -7.67 5.87 -20.12 -0.12 -7.78 15 14 C 0.55 15.18 8.26 70.27 0.58 15.76 15 15 O -0.56 -18.30 17.11 19.83 0.34 -17.96 15 16 O -0.50 -9.46 12.66 -56.61 -0.72 -10.18 15 17 C 0.06 2.20 9.15 22.79 0.21 2.41 15 18 C -0.24 -10.35 5.88 -20.04 -0.12 -10.46 15 19 C 0.52 22.85 8.26 70.25 0.58 23.43 15 20 O -0.54 -29.22 15.94 26.85 0.43 -28.79 15 21 O -0.51 -16.42 12.67 -56.65 -0.72 -17.14 15 22 H 0.28 15.03 8.31 -92.71 -0.77 14.26 15 23 H 0.15 5.36 5.62 -2.91 -0.02 5.34 15 24 H 0.17 3.75 7.59 -2.91 -0.02 3.73 15 25 H 0.43 3.78 9.11 -74.06 -0.67 3.11 15 26 H 0.15 5.04 7.17 -2.91 -0.02 5.02 15 27 H 0.43 9.55 9.11 -74.06 -0.67 8.88 15 Total: -1.00 -77.26 260.64 4.42 -72.84 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.07 Total: 20.21 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 2.82 Total: 1.64 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.30 Total: -52.52 kcal Atomic # 8 Polarization: -82.63 SS G_CDS: -0.64 Total: -83.27 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.11 kcal Total: -77.26 4.42 -72.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309532418.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.281 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds