Wall clock time and date at job start Mon Mar 30 2020 21:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31673 * 119.73026 * 2 1 4 4 C 1.31932 * 121.89722 * 180.27568 * 3 2 1 5 5 C 1.38376 * 121.09862 * 359.97438 * 4 3 2 6 6 N 1.48018 * 120.34344 * 180.02562 * 5 4 3 7 7 O 1.31694 * 120.00230 * 179.97438 * 6 5 4 8 8 O 1.31702 * 119.99810 * 359.97196 * 6 5 4 9 9 C 1.38318 * 119.31716 * 359.97438 * 5 4 3 10 10 C 1.39637 * 119.72295 * 180.27061 * 2 1 3 11 11 C 1.47640 * 120.56743 * 359.74903 * 10 2 1 12 12 O 1.21429 * 119.99999 * 353.87192 * 11 10 2 13 13 O 1.35049 * 119.99792 * 173.87220 * 11 10 2 14 14 C 1.22522 * 116.99859 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00008 * 359.97438 * 14 13 11 16 16 C 1.46578 * 120.00285 * 179.97438 * 14 13 11 17 17 N 1.29390 * 119.99694 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00524 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46773 * 60.00305 * 18 16 14 20 20 H 1.48499 * 109.47372 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47094 * 300.00649 * 18 16 14 22 22 H 1.09003 * 109.47004 * 262.94518 * 1 2 3 23 23 H 1.09000 * 109.46704 * 22.94063 * 1 2 3 24 24 H 1.08995 * 109.47209 * 142.94282 * 1 2 3 25 25 H 1.07998 * 119.45566 * 179.97438 * 4 3 2 26 26 H 1.08003 * 120.86695 * 180.02562 * 9 5 4 27 27 H 0.96999 * 119.99639 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1600 1.1434 0.0000 4 6 3.4783 1.1933 -0.0054 5 6 4.2373 0.0363 -0.0108 6 7 5.7156 0.1118 -0.0162 7 8 6.4314 -0.9937 -0.0208 8 8 6.3151 1.2844 -0.0165 9 6 3.6004 -1.1915 -0.0100 10 6 2.1993 -1.2126 -0.0057 11 6 1.4676 -2.4950 -0.0062 12 8 0.2590 -2.5044 0.1106 13 8 2.1425 -3.6574 -0.1366 14 6 1.4808 -4.6885 -0.1304 15 1 0.4071 -4.6405 -0.0234 16 6 2.1461 -5.9873 -0.2680 17 7 3.4323 -6.0449 -0.3966 18 14 1.1373 -7.5594 -0.2578 19 1 0.1673 -7.5324 -1.3819 20 1 2.0405 -8.7282 -0.4107 21 1 0.4021 -7.6674 1.0279 22 1 -0.3633 -0.1262 1.0199 23 1 -0.3633 0.9464 -0.4006 24 1 -0.3633 -0.8201 -0.6192 25 1 3.9735 2.1531 -0.0056 26 1 4.1682 -2.1103 -0.0137 27 1 3.8727 -6.9044 -0.4874 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750085678.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:59 Heat of formation + Delta-G solvation = -4.526711 kcal Electronic energy + Delta-G solvation = -17801.907982 eV Core-core repulsion = 14530.765007 eV Total energy + Delta-G solvation = -3271.142975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.062 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.62825 -41.75852 -39.93795 -37.87315 -35.76300 -34.92192 -34.58670 -33.90035 -30.36241 -27.97390 -26.90226 -25.87064 -23.73433 -22.57779 -20.45217 -20.30239 -19.43024 -18.50875 -17.79646 -17.46430 -17.37713 -17.08339 -16.79090 -16.28335 -15.68240 -14.88213 -14.81350 -14.01346 -13.90392 -13.68368 -13.42751 -13.14811 -12.73322 -12.59657 -12.55004 -12.19637 -12.00438 -11.94944 -11.62684 -11.49018 -10.98673 -10.79552 -10.70363 -8.92684 -6.05725 -2.03099 -0.87858 -0.29764 -0.22248 1.17224 1.31131 1.46052 1.58586 1.96865 2.15901 2.34757 2.74654 2.84499 2.92138 3.08304 3.18599 3.61270 4.15688 4.26619 4.32439 4.49584 4.68106 4.77387 4.80381 4.91979 5.31759 5.42022 5.59523 6.14168 6.43593 6.74445 7.87157 8.28171 Molecular weight = 252.06amu Principal moments of inertia in cm(-1) A = 0.022992 B = 0.006722 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.508208 B = 4164.377725 C = 5362.948263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.231 3.769 3 N -0.464 5.464 4 C 0.206 3.794 5 C -0.077 4.077 6 N -0.007 5.007 7 O -0.237 6.237 8 O -0.120 6.120 9 C 0.017 3.983 10 C -0.133 4.133 11 C 0.341 3.659 12 O -0.573 6.573 13 O -0.157 6.157 14 C -0.420 4.420 15 H 0.087 0.913 16 C 0.008 3.992 17 N -0.832 5.832 18 Si 1.021 2.979 19 H -0.256 1.256 20 H -0.253 1.253 21 H -0.257 1.257 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.228 0.772 26 H 0.156 0.844 27 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 8.686 0.205 8.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.174 5.174 4 C 0.046 3.954 5 C -0.166 4.166 6 N 0.471 4.529 7 O -0.412 6.412 8 O -0.331 6.331 9 C -0.010 4.010 10 C -0.138 4.138 11 C 0.198 3.802 12 O -0.479 6.479 13 O -0.059 6.059 14 C -0.497 4.497 15 H 0.104 0.896 16 C -0.205 4.205 17 N -0.462 5.462 18 Si 0.838 3.162 19 H -0.180 1.180 20 H -0.177 1.177 21 H -0.181 1.181 22 H 0.117 0.883 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.244 0.756 26 H 0.174 0.826 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.969 9.047 0.202 9.523 hybrid contribution 0.936 -1.707 0.027 1.947 sum -2.032 7.339 0.229 7.619 Atomic orbital electron populations 1.21173 0.84772 1.05209 1.05227 1.22293 0.99564 0.85523 0.83225 1.68276 1.07115 1.26479 1.15539 1.23641 0.88658 0.97980 0.85132 1.21467 0.77425 0.97898 1.19854 1.50385 1.04448 1.02580 0.95483 1.96374 1.65194 1.19862 1.59819 1.96196 1.74706 1.10391 1.51772 1.21756 0.94158 0.98182 0.86876 1.19963 0.91718 0.93621 1.08480 1.20396 0.86373 0.84114 0.89362 1.90507 1.14566 1.85973 1.56828 1.80503 1.42695 1.14424 1.68242 1.21039 0.93962 0.83441 1.51288 0.89590 1.28289 0.96830 1.01543 0.93842 1.68952 1.11607 1.30852 1.34832 0.84629 0.77839 0.73240 0.80482 1.18017 1.17664 1.18095 0.88333 0.87685 0.88806 0.75587 0.82632 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 8.86 71.24 0.63 -2.38 15 2 C 0.23 7.25 6.82 42.92 0.29 7.55 15 3 N -0.46 -12.33 10.26 -182.75 -1.87 -14.21 15 4 C 0.21 5.02 10.73 84.71 0.91 5.93 15 5 C -0.08 -2.39 6.90 36.43 0.25 -2.14 15 6 N -0.01 -0.22 4.98 -46.34 -0.23 -0.46 15 7 O -0.24 -9.40 19.22 3.53 0.07 -9.33 15 8 O -0.12 -3.59 19.17 3.51 0.07 -3.52 15 9 C 0.02 0.61 9.26 22.75 0.21 0.82 15 10 C -0.13 -5.13 5.89 -20.00 -0.12 -5.25 15 11 C 0.34 16.42 7.70 70.31 0.54 16.96 15 12 O -0.57 -28.45 12.51 20.05 0.25 -28.20 15 13 O -0.16 -8.59 8.64 82.25 0.71 -7.88 15 14 C -0.42 -23.11 9.62 70.00 0.67 -22.44 15 15 H 0.09 4.81 6.70 -2.91 -0.02 4.79 15 16 C 0.01 0.41 5.69 87.23 0.50 0.91 15 17 N -0.83 -43.25 13.66 23.21 0.32 -42.93 15 18 Si 1.02 37.63 29.64 68.60 2.03 39.66 15 19 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 20 H -0.25 -8.43 7.11 99.48 0.71 -7.72 15 21 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 22 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.09 3.15 5.89 -2.39 -0.01 3.13 15 25 H 0.23 3.61 7.58 -2.91 -0.02 3.59 15 26 H 0.16 6.43 7.32 -2.91 -0.02 6.41 15 27 H 0.30 13.89 8.26 -92.71 -0.77 13.12 15 Total: -1.00 -62.11 262.90 6.47 -55.64 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.24 Total: 11.27 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 3.89 Total: -0.04 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -1.79 Total: -57.60 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: 1.10 Total: -48.93 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -62.11 6.47 -55.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750085678.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.111 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds