Wall clock time and date at job start Mon Mar 30 2020 21:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99792 * 2 1 4 4 H 1.48503 * 109.46813 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47381 * 300.00078 * 3 2 1 6 6 H 1.48501 * 109.46976 * 60.00137 * 3 2 1 7 7 C 1.38794 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99847 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00091 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47423 * 180.02562 * 10 9 7 12 12 O 1.20831 * 120.00091 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00208 * 180.02562 * 11 10 9 14 14 C 1.45202 * 116.99984 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46731 * 179.97438 * 14 13 11 16 16 H 1.08990 * 115.56470 * 330.69292 * 15 14 13 17 17 C 1.53006 * 117.49629 * 184.99887 * 15 14 13 18 18 C 1.52997 * 59.99924 * 252.51523 * 17 15 14 19 19 F 1.39903 * 117.49597 * 252.51064 * 18 17 15 20 20 F 1.39898 * 117.50066 * 107.49358 * 18 17 15 21 21 H 0.97007 * 120.00287 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46570 * 60.00328 * 10 9 7 23 23 H 1.08999 * 109.47087 * 300.00768 * 10 9 7 24 24 H 1.09000 * 109.47089 * 60.00063 * 14 13 11 25 25 H 1.09001 * 109.46848 * 299.99966 * 14 13 11 26 26 H 1.08999 * 117.49661 * 0.02562 * 17 15 14 27 27 H 1.08997 * 117.49650 * 145.02282 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3966 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3026 -0.0012 12 8 0.7956 -5.5015 -0.0021 13 8 2.8407 -6.3389 -0.0008 14 6 2.2610 -7.6702 -0.0008 15 6 3.3800 -8.7135 -0.0010 16 1 4.3087 -8.4072 -0.4823 17 6 2.9746 -10.1842 -0.1193 18 6 3.4854 -9.6364 1.2148 19 9 4.7665 -10.0225 1.6235 20 9 2.5514 -9.4616 2.2415 21 1 -0.4851 0.8401 0.0004 22 1 3.1244 -3.7313 0.8895 23 1 3.1245 -3.7312 -0.8904 24 1 1.6452 -7.7982 -0.8910 25 1 1.6446 -7.7980 0.8890 26 1 1.9108 -10.4082 -0.1975 27 1 3.6367 -10.8452 -0.6786 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816420764.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:14:03 Heat of formation + Delta-G solvation = -177.838703 kcal Electronic energy + Delta-G solvation = -15569.917926 eV Core-core repulsion = 12283.323263 eV Total energy + Delta-G solvation = -3286.594662 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.042 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.73845 -48.43667 -41.53451 -38.27640 -36.90271 -34.61435 -31.63213 -28.66125 -27.66941 -23.59482 -22.66393 -22.19304 -19.91884 -19.12612 -18.55919 -18.12604 -17.51076 -17.11152 -16.90238 -16.82577 -16.06532 -15.19249 -15.03860 -14.85404 -14.68122 -14.65186 -14.45704 -13.78055 -13.68854 -13.18246 -12.92295 -12.77445 -12.60667 -12.32709 -11.88971 -11.76411 -11.57856 -11.17852 -10.90327 -10.38330 -8.74189 -8.38030 -6.17700 0.96064 1.08318 1.40506 1.42280 1.55920 1.78269 1.95632 2.08631 2.23309 2.97235 3.07970 3.24771 3.33932 3.53711 3.89286 3.93066 4.12602 4.17523 4.26259 4.43868 4.57693 4.72849 4.84478 5.21548 5.41383 6.18142 6.63100 7.04021 8.71431 Molecular weight = 252.04amu Principal moments of inertia in cm(-1) A = 0.055445 B = 0.003739 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.881063 B = 7486.123465 C = 7686.760329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.086 0.914 9 S -0.138 6.138 10 C -0.109 4.109 11 C 0.490 3.510 12 O -0.518 6.518 13 O -0.350 6.350 14 C 0.082 3.918 15 C -0.152 4.152 16 H 0.157 0.843 17 C -0.120 4.120 18 C 0.164 3.836 19 F -0.169 7.169 20 F -0.175 7.175 21 H 0.273 0.727 22 H 0.121 0.879 23 H 0.126 0.874 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 -18.859 -1.730 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.105 0.895 9 S 0.089 5.911 10 C -0.258 4.258 11 C 0.333 3.667 12 O -0.406 6.406 13 O -0.267 6.267 14 C 0.008 3.992 15 C -0.171 4.171 16 H 0.175 0.825 17 C -0.157 4.157 18 C 0.128 3.872 19 F -0.149 7.149 20 F -0.156 7.156 21 H 0.082 0.918 22 H 0.139 0.861 23 H 0.144 0.856 24 H 0.120 0.880 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.641 -19.082 -1.677 20.624 hybrid contribution 1.371 1.173 0.516 1.876 sum 9.012 -17.910 -1.161 20.083 Atomic orbital electron populations 1.70170 1.07922 1.28741 1.47794 1.26128 0.96002 1.03318 0.93578 0.84875 0.78611 0.76184 0.78098 1.18034 1.19839 1.19972 1.23223 0.95526 0.91516 1.59168 0.89547 1.85533 1.09267 0.99148 1.97173 1.23103 1.04299 0.89936 1.08433 1.22977 0.84741 0.87325 0.71684 1.90673 1.18231 1.86058 1.45680 1.86456 1.40396 1.15656 1.84185 1.22698 0.94855 0.77341 1.04277 1.23587 1.02976 0.92754 0.97756 0.82495 1.24622 1.06757 0.93450 0.90906 1.20605 0.75498 1.09409 0.81692 1.93012 1.37957 1.91753 1.92212 1.92993 1.64133 1.95974 1.62489 0.91841 0.86113 0.85633 0.88039 0.90987 0.83920 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.63 13.22 21.65 0.29 -54.34 15 2 C 0.01 0.82 5.49 84.86 0.47 1.29 15 3 Si 1.00 42.76 29.55 68.60 2.03 44.79 15 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 7 C -0.55 -30.44 9.50 67.95 0.65 -29.80 15 8 H 0.09 4.47 7.80 -2.91 -0.02 4.45 15 9 S -0.14 -7.43 20.58 -56.49 -1.16 -8.59 15 10 C -0.11 -4.30 6.27 71.23 0.45 -3.85 15 11 C 0.49 18.13 7.98 71.23 0.57 18.69 15 12 O -0.52 -22.46 15.61 21.95 0.34 -22.11 15 13 O -0.35 -10.21 10.22 -51.45 -0.53 -10.74 15 14 C 0.08 1.84 5.73 71.98 0.41 2.26 15 15 C -0.15 -2.35 6.05 -10.79 -0.07 -2.42 15 16 H 0.16 2.04 8.14 -2.39 -0.02 2.02 15 17 C -0.12 -1.09 10.22 30.60 0.31 -0.77 15 18 C 0.16 2.97 5.20 30.59 0.16 3.13 15 19 F -0.17 -3.46 17.60 44.97 0.79 -2.67 15 20 F -0.18 -4.13 16.48 44.97 0.74 -3.39 15 21 H 0.27 15.13 8.31 -92.70 -0.77 14.36 15 22 H 0.12 4.35 8.14 -2.39 -0.02 4.33 15 23 H 0.13 4.40 8.14 -2.40 -0.02 4.38 15 24 H 0.10 2.04 8.13 -2.39 -0.02 2.02 15 25 H 0.07 1.80 7.05 -2.39 -0.02 1.79 15 26 H 0.14 0.89 8.14 -2.39 -0.02 0.87 15 27 H 0.16 0.52 8.14 -2.39 -0.02 0.50 15 Total: -1.00 -71.30 273.03 6.64 -64.66 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.19 Total: 3.85 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 2.95 Total: -11.47 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.29 Total: -54.34 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.18 Total: -32.85 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 1.53 Total: -6.06 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.16 Total: -8.59 kcal Total: -71.30 6.64 -64.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816420764.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.176 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds