Wall clock time and date at job start Mon Mar 30 2020 21:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47324 * 180.02562 * 10 9 7 12 12 N 1.31123 * 126.55223 * 89.70758 * 11 10 9 13 13 C 1.34499 * 105.61505 * 179.91505 * 12 11 10 14 14 C 1.50698 * 126.28923 * 180.12443 * 13 12 11 15 15 C 1.53001 * 109.47067 * 270.24027 * 14 13 12 16 16 H 1.09002 * 110.75198 * 57.02264 * 15 14 13 17 17 C 1.55312 * 110.84692 * 180.71757 * 15 14 13 18 18 C 1.54942 * 100.94439 * 152.32515 * 17 15 14 19 19 O 1.43646 * 105.13649 * 323.55469 * 18 17 15 20 20 C 1.43237 * 109.97122 * 24.42950 * 19 18 17 21 21 N 1.29949 * 107.41939 * 0.35404 * 13 12 11 22 22 O 1.21298 * 110.25426 * 359.77411 * 21 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 27 27 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 28 28 H 1.08995 * 109.47385 * 30.24525 * 14 13 12 29 29 H 1.09002 * 109.46977 * 150.24269 * 14 13 12 30 30 H 1.09004 * 111.12037 * 270.24580 * 17 15 14 31 31 H 1.09001 * 111.12472 * 34.40113 * 17 15 14 32 32 H 1.09000 * 110.31031 * 204.63696 * 18 17 15 33 33 H 1.09009 * 110.30767 * 82.46517 * 18 17 15 34 34 H 1.09008 * 109.83189 * 238.77623 * 20 19 18 35 35 H 1.09000 * 109.91347 * 117.84683 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5286 -2.6366 -0.0001 12 7 6.3086 -2.6326 1.0538 13 6 7.5652 -2.6364 0.5742 14 6 8.8316 -2.6367 1.3910 15 6 9.2598 -1.1943 1.6686 16 1 8.4648 -0.6459 2.1739 17 6 10.5744 -1.1573 2.4949 18 6 11.1685 0.2001 2.0418 19 8 10.8302 0.3117 0.6502 20 6 9.6737 -0.4829 0.3625 21 7 7.4865 -2.6348 -0.7229 22 8 6.3252 -2.6349 -1.0732 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 3.6579 -3.1514 0.8880 27 1 3.6585 -3.1495 -0.8920 28 1 8.6548 -3.1514 2.3353 29 1 9.6195 -3.1498 0.8395 30 1 10.3659 -1.1574 3.5648 31 1 11.2317 -1.9837 2.2245 32 1 12.2510 0.2007 2.1693 33 1 10.7196 1.0170 2.6069 34 1 9.9139 -1.2226 -0.4013 35 1 8.8613 0.1558 0.0159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236177708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:30 Heat of formation + Delta-G solvation = 2.779929 kcal Electronic energy + Delta-G solvation = -18167.605117 eV Core-core repulsion = 15168.445171 eV Total energy + Delta-G solvation = -2999.159946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.29320 -39.70528 -36.08786 -34.97314 -33.53894 -32.37998 -30.74129 -29.87759 -27.25367 -26.26018 -23.59298 -22.66376 -21.90300 -21.00431 -20.27861 -17.82241 -17.24161 -17.01516 -16.69219 -16.13026 -14.98041 -14.79424 -14.40509 -14.20597 -13.67432 -13.46861 -13.41625 -12.83617 -12.76022 -12.18267 -12.03326 -11.87499 -11.75139 -11.19594 -11.12620 -11.09751 -11.06417 -10.76608 -10.51231 -10.23228 -9.92559 -9.73319 -9.43574 -9.39893 -8.65162 -6.15862 -4.16594 1.42969 2.44141 3.19189 3.25267 3.33351 3.36380 3.60963 3.73567 4.16719 4.21449 4.35879 4.49345 4.61844 4.93290 4.95461 5.04985 5.17130 5.18285 5.36670 5.41937 5.46511 5.57040 5.64302 5.72155 5.85613 5.88143 5.97733 6.03965 6.25447 6.41650 6.75741 6.99151 7.11340 7.58817 8.35894 8.42774 8.86167 9.44783 10.96748 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.004952 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.524889 B = 5652.524533 C = 6346.089775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.285 1.285 7 C -0.526 4.526 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.020 4.020 11 C 0.210 3.790 12 N -0.494 5.494 13 C 0.161 3.839 14 C -0.013 4.013 15 C -0.120 4.120 16 H 0.094 0.906 17 C -0.149 4.149 18 C 0.050 3.950 19 O -0.385 6.385 20 C 0.055 3.945 21 N -0.395 5.395 22 O 0.070 5.930 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.728 -3.861 4.107 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.191 1.191 6 H -0.211 1.211 7 C -0.564 4.564 8 H 0.097 0.903 9 C -0.046 4.046 10 C -0.059 4.059 11 C -0.009 4.009 12 N -0.227 5.227 13 C -0.112 4.112 14 C -0.052 4.052 15 C -0.139 4.139 16 H 0.112 0.888 17 C -0.186 4.186 18 C -0.026 4.026 19 O -0.304 6.304 20 C -0.021 4.021 21 N -0.105 5.105 22 O 0.013 5.987 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.465 -3.627 3.857 21.139 hybrid contribution -0.028 0.823 0.146 0.836 sum 20.437 -2.804 4.003 21.013 Atomic orbital electron populations 1.69889 1.06232 1.27171 1.50136 1.24940 0.94711 0.99068 0.94171 0.86837 0.80402 0.83743 0.78708 1.20116 1.19067 1.21072 1.20926 0.88327 0.94969 1.52187 0.90340 1.19619 0.97937 0.89543 0.97462 1.20550 0.77064 1.03034 1.05255 1.29658 0.99453 0.92016 0.79755 1.71932 0.99745 1.21962 1.29106 1.25688 0.95414 1.01450 0.88673 1.19844 0.89518 0.96879 0.98937 1.22742 0.98604 0.95841 0.96745 0.88789 1.23310 0.95831 0.98534 1.00969 1.23375 1.00412 0.96321 0.82536 1.88406 1.46759 1.69657 1.25603 1.23230 0.87991 0.94243 0.96652 1.74564 0.98323 1.22139 1.15497 1.85283 1.11262 1.65906 1.36207 0.92450 0.95844 0.96059 0.87619 0.88424 0.88171 0.88979 0.89382 0.89921 0.89635 0.92072 0.90635 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.96 55.43 0.77 -25.84 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.07 9.66 -34.44 -0.33 -14.41 16 8 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.16 4.02 -27.88 -0.11 -0.27 16 10 C -0.02 -0.36 5.78 -27.88 -0.16 -0.52 16 11 C 0.21 3.70 7.77 -13.06 -0.10 3.60 16 12 N -0.49 -8.59 11.55 -9.87 -0.11 -8.71 16 13 C 0.16 2.47 7.03 -156.37 -1.10 1.37 16 14 C -0.01 -0.14 5.24 -27.88 -0.15 -0.29 16 15 C -0.12 -1.28 3.02 -88.67 -0.27 -1.55 16 16 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.15 -1.17 6.62 -24.48 -0.16 -1.33 16 18 C 0.05 0.46 7.78 38.18 0.30 0.75 16 19 O -0.38 -4.96 11.36 -35.23 -0.40 -5.36 16 20 C 0.06 0.70 6.96 37.88 0.26 0.96 16 21 N -0.39 -6.55 12.16 30.90 0.38 -6.18 16 22 O 0.07 1.21 11.31 18.11 0.20 1.42 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 25 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 26 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 27 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.56 8.04 -51.93 -0.42 0.15 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.08 0.96 7.76 -51.92 -0.40 0.56 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -30.67 297.97 -6.23 -36.91 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.97 Total: -3.53 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.92 Total: -9.73 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 1.04 Total: -40.73 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.20 Total: -3.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.67 -6.23 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236177708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.685 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds