Wall clock time and date at job start Mon Mar 30 2020 21:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47324 * 180.02562 * 10 9 7 12 12 N 1.31123 * 126.55223 * 89.70758 * 11 10 9 13 13 C 1.34499 * 105.61505 * 179.91505 * 12 11 10 14 14 C 1.50698 * 126.28923 * 180.12443 * 13 12 11 15 15 C 1.53001 * 109.47067 * 270.24027 * 14 13 12 16 16 H 1.09002 * 110.75198 * 57.02264 * 15 14 13 17 17 C 1.55312 * 110.84692 * 180.71757 * 15 14 13 18 18 C 1.54942 * 100.94439 * 152.32515 * 17 15 14 19 19 O 1.43646 * 105.13649 * 323.55469 * 18 17 15 20 20 C 1.43237 * 109.97122 * 24.42950 * 19 18 17 21 21 N 1.29949 * 107.41939 * 0.35404 * 13 12 11 22 22 O 1.21298 * 110.25426 * 359.77411 * 21 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 27 27 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 28 28 H 1.08995 * 109.47385 * 30.24525 * 14 13 12 29 29 H 1.09002 * 109.46977 * 150.24269 * 14 13 12 30 30 H 1.09004 * 111.12037 * 270.24580 * 17 15 14 31 31 H 1.09001 * 111.12472 * 34.40113 * 17 15 14 32 32 H 1.09000 * 110.31031 * 204.63696 * 18 17 15 33 33 H 1.09009 * 110.30767 * 82.46517 * 18 17 15 34 34 H 1.09008 * 109.83189 * 238.77623 * 20 19 18 35 35 H 1.09000 * 109.91347 * 117.84683 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5286 -2.6366 -0.0001 12 7 6.3086 -2.6326 1.0538 13 6 7.5652 -2.6364 0.5742 14 6 8.8316 -2.6367 1.3910 15 6 9.2598 -1.1943 1.6686 16 1 8.4648 -0.6459 2.1739 17 6 10.5744 -1.1573 2.4949 18 6 11.1685 0.2001 2.0418 19 8 10.8302 0.3117 0.6502 20 6 9.6737 -0.4829 0.3625 21 7 7.4865 -2.6348 -0.7229 22 8 6.3252 -2.6349 -1.0732 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 3.6579 -3.1514 0.8880 27 1 3.6585 -3.1495 -0.8920 28 1 8.6548 -3.1514 2.3353 29 1 9.6195 -3.1498 0.8395 30 1 10.3659 -1.1574 3.5648 31 1 11.2317 -1.9837 2.2245 32 1 12.2510 0.2007 2.1693 33 1 10.7196 1.0170 2.6069 34 1 9.9139 -1.2226 -0.4013 35 1 8.8613 0.1558 0.0159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236177708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:30 Heat of formation + Delta-G solvation = -18.503723 kcal Electronic energy + Delta-G solvation = -18168.528045 eV Core-core repulsion = 15168.445171 eV Total energy + Delta-G solvation = -3000.082875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.58530 -40.54750 -37.31312 -36.49372 -34.91673 -33.96262 -32.22925 -30.77095 -28.21965 -28.03973 -24.86287 -23.77787 -23.15508 -22.22775 -21.45855 -19.27313 -18.93159 -18.20983 -17.83122 -16.97970 -16.38126 -15.96282 -15.82274 -15.67864 -14.98336 -14.71593 -14.56016 -14.20622 -13.81701 -13.62899 -13.47607 -13.03579 -12.88882 -12.57160 -12.47590 -12.15023 -12.01680 -11.98515 -11.87950 -11.81327 -11.77262 -11.46519 -10.81926 -10.78534 -10.61591 -8.30943 -6.35176 0.10070 1.18024 1.33708 1.36600 1.45656 1.83465 2.33094 2.59985 2.85279 3.02622 3.04810 3.37387 3.66133 3.78918 4.01357 4.16023 4.20520 4.28977 4.34754 4.39306 4.48900 4.60934 4.67970 4.77555 4.81108 4.85218 4.91127 4.95745 4.96787 5.17610 5.23110 5.34509 5.56563 5.93175 6.22072 6.72505 7.12290 7.29455 8.84827 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.004952 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.524889 B = 5652.524533 C = 6346.089775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.255 1.255 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.054 0.946 9 C -0.003 4.003 10 C -0.010 4.010 11 C 0.206 3.794 12 N -0.506 5.506 13 C 0.167 3.833 14 C -0.012 4.012 15 C -0.116 4.116 16 H 0.080 0.920 17 C -0.135 4.135 18 C 0.039 3.961 19 O -0.409 6.409 20 C 0.055 3.945 21 N -0.406 5.406 22 O 0.060 5.940 23 H 0.268 0.732 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.185 -4.035 5.118 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.194 1.194 5 H -0.179 1.179 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.072 0.928 9 C -0.042 4.042 10 C -0.049 4.049 11 C -0.013 4.013 12 N -0.240 5.240 13 C -0.106 4.106 14 C -0.050 4.050 15 C -0.136 4.136 16 H 0.099 0.901 17 C -0.172 4.172 18 C -0.036 4.036 19 O -0.329 6.329 20 C -0.021 4.021 21 N -0.118 5.118 22 O 0.006 5.994 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 22.928 -3.810 4.860 23.745 hybrid contribution -0.757 0.832 -0.153 1.135 sum 22.171 -2.978 4.706 22.860 Atomic orbital electron populations 1.70016 1.07926 1.28169 1.52116 1.25770 0.95420 1.02750 0.94204 0.85879 0.79460 0.79599 0.79062 1.19422 1.17933 1.20718 1.21260 0.90650 0.93958 1.50694 0.92811 1.19472 0.95082 0.92527 0.97101 1.20307 0.77640 1.00388 1.06536 1.29416 0.99193 0.92601 0.80127 1.71950 1.00686 1.22117 1.29264 1.26449 0.96137 0.99472 0.88547 1.20119 0.87970 0.97407 0.99520 1.22685 0.99720 0.95121 0.96085 0.90126 1.23309 0.93997 0.98246 1.01670 1.23657 1.01888 0.97302 0.80787 1.88381 1.46610 1.69936 1.27947 1.23152 0.87436 0.93807 0.97729 1.74571 0.97900 1.23045 1.16317 1.85272 1.11596 1.66239 1.36279 0.92320 0.95904 0.96330 0.86879 0.86872 0.86034 0.87040 0.87206 0.88192 0.87557 0.91884 0.91006 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.89 13.96 21.45 0.30 -56.59 16 2 C 0.02 0.94 5.47 84.66 0.46 1.40 16 3 Si 0.94 43.49 27.47 68.60 1.88 45.37 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.26 -11.31 6.54 99.48 0.65 -10.66 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.53 -28.39 9.66 25.60 0.25 -28.14 16 8 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 9 C 0.00 -0.14 4.02 29.85 0.12 -0.02 16 10 C -0.01 -0.34 5.78 29.85 0.17 -0.17 16 11 C 0.21 7.00 7.77 88.38 0.69 7.68 16 12 N -0.51 -16.78 11.55 -303.19 -3.50 -20.28 16 13 C 0.17 4.82 7.03 138.46 0.97 5.79 16 14 C -0.01 -0.22 5.24 29.85 0.16 -0.07 16 15 C -0.12 -2.22 3.02 -9.53 -0.03 -2.25 16 16 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.13 -1.65 6.62 32.05 0.21 -1.43 16 18 C 0.04 0.62 7.78 72.65 0.56 1.18 16 19 O -0.41 -10.03 11.36 -148.98 -1.69 -11.72 16 20 C 0.06 1.35 6.96 72.45 0.50 1.85 16 21 N -0.41 -12.97 12.16 -60.32 -0.73 -13.71 16 22 O 0.06 2.01 11.31 74.86 0.85 2.86 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 24 H 0.02 1.01 7.20 -2.38 -0.02 0.99 16 25 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 26 H 0.11 3.78 8.14 -2.38 -0.02 3.76 16 27 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 28 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.11 1.73 8.07 -2.39 -0.02 1.71 16 30 H 0.11 0.91 8.14 -2.38 -0.02 0.90 16 31 H 0.10 0.92 8.04 -2.39 -0.02 0.90 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 34 H 0.07 1.76 7.76 -2.38 -0.02 1.74 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -66.04 297.97 2.20 -63.84 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.02 Total: 4.40 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 4.07 Total: -14.18 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -3.94 Total: -90.57 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.85 Total: -8.86 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -66.04 2.20 -63.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236177708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.341 kcal (2) G-P(sol) polarization free energy of solvation -66.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds