Wall clock time and date at job start Mon Mar 30 2020 21:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47036 * 2 1 4 4 O 1.42898 * 109.47565 * 240.00407 * 2 1 3 5 5 C 1.50702 * 109.47007 * 120.00014 * 2 1 3 6 6 C 1.40889 * 126.29225 * 85.00622 * 5 2 1 7 7 C 1.34852 * 107.41805 * 179.73291 * 6 5 2 8 8 N 1.36343 * 108.21526 * 0.42442 * 7 6 5 9 9 C 1.46506 * 125.63502 * 179.83321 * 8 7 6 10 10 C 1.50703 * 109.46877 * 269.68984 * 9 8 7 11 11 O 1.21281 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00069 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00214 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47142 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00013 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99843 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99806 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47112 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47011 * 120.00419 * 18 16 14 21 21 H 1.48499 * 109.47134 * 240.00040 * 18 16 14 22 22 C 1.34858 * 126.28960 * 264.99696 * 5 2 1 23 23 H 1.08995 * 109.47046 * 299.99628 * 1 2 3 24 24 H 1.08993 * 109.47025 * 60.00100 * 1 2 3 25 25 H 1.08999 * 109.46588 * 179.97438 * 1 2 3 26 26 H 0.96706 * 113.99740 * 300.00055 * 4 2 1 27 27 H 1.07996 * 126.28809 * 359.97438 * 6 5 2 28 28 H 1.08000 * 125.89212 * 180.24948 * 7 6 5 29 29 H 1.09000 * 109.46803 * 29.68462 * 9 8 7 30 30 H 1.09000 * 109.47214 * 149.69256 * 9 8 7 31 31 H 0.97000 * 119.99813 * 0.02562 * 12 10 9 32 32 H 1.08997 * 109.47383 * 300.00029 * 13 12 10 33 33 H 1.09000 * 109.47008 * 60.00245 * 13 12 10 34 34 H 0.97000 * 119.99660 * 179.97438 * 17 16 14 35 35 H 1.07995 * 125.89158 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 2.2171 -2.0997 1.3743 7 6 2.6838 -2.3180 2.6205 8 7 2.7850 -1.1152 3.2545 9 6 3.2498 -0.9111 4.6288 10 6 2.0747 -0.9699 5.5705 11 8 0.9589 -1.1636 5.1364 12 7 2.2638 -0.8081 6.8950 13 6 1.1216 -0.8658 7.8105 14 6 1.5999 -0.6570 9.2243 15 1 2.6497 -0.4969 9.4211 16 6 0.6972 -0.6693 10.2663 17 7 -0.5812 -0.8638 10.0266 18 14 1.2900 -0.4098 12.0187 19 1 2.7620 -0.2137 12.0193 20 1 0.6308 0.7913 12.5914 21 1 0.9483 -1.6001 12.8382 22 6 2.3877 -0.1331 2.3963 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 1.7211 -1.5952 -1.2330 27 1 2.0244 -2.8513 0.6231 28 1 2.9318 -3.2800 3.0443 29 1 3.9643 -1.6917 4.8903 30 1 3.7310 0.0636 4.7086 31 1 3.1563 -0.6535 7.2421 32 1 0.4069 -0.0854 7.5494 33 1 0.6406 -1.8406 7.7303 34 1 -1.2162 -0.8728 10.7598 35 1 2.3625 0.9247 2.6125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085834412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:14:27 Heat of formation + Delta-G solvation = -44.574057 kcal Electronic energy + Delta-G solvation = -17811.817985 eV Core-core repulsion = 14810.604616 eV Total energy + Delta-G solvation = -3001.213369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.21978 -38.79641 -37.16828 -34.36021 -32.91904 -32.38913 -30.81581 -28.45927 -27.96138 -26.21508 -23.19847 -22.58034 -20.48641 -19.79169 -19.61765 -17.78177 -17.29058 -15.97766 -15.85615 -15.16742 -15.07996 -14.92977 -14.32407 -14.04053 -13.80134 -13.39771 -12.91577 -12.71902 -12.47815 -12.36054 -12.13883 -12.06126 -11.75423 -11.59923 -11.04764 -10.98186 -10.92890 -10.41370 -10.16926 -9.49839 -9.44384 -8.85132 -8.31889 -8.06669 -7.93161 -6.25671 -4.33641 2.34956 2.96844 3.05874 3.08239 3.17482 3.24800 3.27502 3.95227 4.28080 4.52045 4.77875 5.04331 5.07205 5.10742 5.11952 5.16640 5.28233 5.30771 5.42266 5.65649 5.79244 5.93524 6.15146 6.28516 6.52810 7.08893 7.14618 7.22525 7.32979 7.38328 7.44767 7.55732 7.66449 7.85576 8.42044 8.63870 8.88669 9.33238 10.84446 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.051170 B = 0.003606 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.067408 B = 7762.072022 C = 8015.054228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.179 3.821 3 H 0.096 0.904 4 O -0.563 6.563 5 C -0.205 4.205 6 C -0.194 4.194 7 C 0.001 3.999 8 N -0.426 5.426 9 C 0.083 3.917 10 C 0.478 3.522 11 O -0.536 6.536 12 N -0.708 5.708 13 C 0.250 3.750 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.009 3.991 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.373 0.627 27 H 0.131 0.869 28 H 0.158 0.842 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.392 0.608 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.266 0.734 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 0.148 -14.688 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.120 3.880 3 H 0.114 0.886 4 O -0.368 6.368 5 C -0.212 4.212 6 C -0.219 4.219 7 C -0.129 4.129 8 N -0.100 5.100 9 C -0.043 4.043 10 C 0.260 3.740 11 O -0.413 6.413 12 N -0.357 5.357 13 C 0.130 3.870 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.121 4.121 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.220 0.780 27 H 0.149 0.851 28 H 0.175 0.825 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.225 0.775 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.492 0.626 -14.630 16.449 hybrid contribution 0.282 -0.378 1.589 1.658 sum 7.774 0.247 -13.041 15.184 Atomic orbital electron populations 1.22455 0.96162 1.02656 1.02210 1.20039 0.92112 0.94872 0.80998 0.88585 1.86525 1.77599 1.29064 1.43622 1.20017 1.10165 0.94532 0.96491 1.20480 1.09271 0.95135 0.96985 1.21708 1.08259 0.89089 0.93849 1.43494 1.50066 1.06804 1.09625 1.21783 0.96637 1.05586 0.80312 1.20650 0.90303 0.79128 0.83923 1.90743 1.24795 1.48890 1.76875 1.46454 1.13120 1.70337 1.05796 1.19151 0.83498 0.97838 0.86546 1.21234 0.94481 1.51869 0.90823 0.91760 1.24967 0.94707 0.94624 0.99726 1.69984 1.01608 1.47947 1.32589 0.86337 0.78868 0.77969 0.83601 1.19599 1.20728 1.20726 1.21450 1.06546 0.93921 0.90180 0.91443 0.92298 0.92301 0.78020 0.85112 0.82457 0.86760 0.86802 0.77534 0.95435 0.95439 0.92382 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.52 37.16 0.35 -1.59 16 2 C 0.18 2.11 4.05 -27.88 -0.11 1.99 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 O -0.56 -6.60 13.23 -35.23 -0.47 -7.07 16 5 C -0.21 -2.79 5.18 -104.82 -0.54 -3.34 16 6 C -0.19 -2.61 10.25 -39.78 -0.41 -3.02 16 7 C 0.00 0.01 11.43 -16.75 -0.19 -0.18 16 8 N -0.43 -6.10 2.24 -118.41 -0.26 -6.36 16 9 C 0.08 1.05 6.57 -5.19 -0.03 1.02 16 10 C 0.48 8.87 7.90 -10.99 -0.09 8.78 16 11 O -0.54 -12.67 16.43 5.56 0.09 -12.58 16 12 N -0.71 -13.81 5.55 -61.47 -0.34 -14.15 16 13 C 0.25 6.41 5.43 -5.19 -0.03 6.38 16 14 C -0.55 -14.34 9.28 -34.44 -0.32 -14.66 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.88 -25.61 13.29 55.43 0.74 -24.88 16 18 Si 0.91 20.35 29.54 -169.99 -5.02 15.32 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.01 0.13 11.35 -16.75 -0.19 -0.06 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.37 3.24 8.30 45.56 0.38 3.62 16 27 H 0.13 1.44 7.70 -52.49 -0.40 1.03 16 28 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.39 6.27 8.32 -40.82 -0.34 5.93 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -33.95 309.47 -6.39 -40.34 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.13 Total: 7.73 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.66 Total: -3.03 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.13 Total: -45.39 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.37 Total: -19.64 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.95 -6.39 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085834412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.236 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds