Wall clock time and date at job start Mon Mar 30 2020 21:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99852 * 2 1 4 4 N 1.46503 * 109.47343 * 125.00369 * 3 2 1 5 5 C 1.46491 * 120.00389 * 96.52818 * 4 3 2 6 6 C 1.53007 * 109.47519 * 270.00474 * 5 4 3 7 7 C 1.52998 * 117.49511 * 243.62174 * 6 5 4 8 8 C 1.52994 * 117.49700 * 175.00198 * 6 5 4 9 9 C 1.34778 * 119.99582 * 276.53795 * 4 3 2 10 10 O 1.21437 * 119.99773 * 175.68117 * 9 4 3 11 11 C 1.48832 * 119.99997 * 355.66934 * 9 4 3 12 12 O 1.21500 * 120.00201 * 5.67029 * 11 9 4 13 13 N 1.34779 * 119.99987 * 185.66348 * 11 9 4 14 14 C 1.36119 * 119.99804 * 180.02562 * 13 11 9 15 15 H 1.08002 * 120.00252 * 359.97438 * 14 13 11 16 16 C 1.39587 * 119.99902 * 180.02562 * 14 13 11 17 17 N 1.31017 * 119.99737 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47000 * 89.99888 * 18 16 14 20 20 H 1.48497 * 109.47134 * 210.00018 * 18 16 14 21 21 H 1.48496 * 109.47037 * 330.00132 * 18 16 14 22 22 H 1.07995 * 120.00170 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99936 * 179.97438 * 1 2 3 24 24 H 1.08007 * 119.99791 * 179.97438 * 2 1 3 25 25 H 1.08992 * 109.47545 * 4.99816 * 3 2 1 26 26 H 1.09002 * 109.46812 * 244.99542 * 3 2 1 27 27 H 1.09007 * 109.47130 * 30.00146 * 5 4 3 28 28 H 1.09006 * 109.47512 * 150.00137 * 5 4 3 29 29 H 1.09000 * 115.54497 * 29.32813 * 6 5 4 30 30 H 1.08995 * 117.50208 * 0.02562 * 7 6 5 31 31 H 1.09005 * 117.49543 * 145.01676 * 7 6 5 32 32 H 1.09009 * 117.49546 * 214.97324 * 8 6 5 33 33 H 1.08995 * 117.50770 * 359.97438 * 8 6 5 34 34 H 0.96996 * 119.99939 * 0.02562 * 13 11 9 35 35 H 0.97005 * 119.99711 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3972 0.9607 0.9347 6 6 4.5640 -0.5429 1.1634 7 6 5.4495 -0.9861 2.3298 8 6 5.9414 -1.1504 0.8904 9 6 2.5584 1.6980 2.3532 10 8 3.3091 1.6452 3.3063 11 6 1.1576 2.1671 2.5344 12 8 0.3771 2.1231 1.6043 13 7 0.7549 2.6407 3.7303 14 6 -0.5264 3.0693 3.8960 15 1 -1.2202 3.0303 3.0692 16 6 -0.9434 3.5602 5.1344 17 7 -0.1014 3.6090 6.1370 18 14 -2.7015 4.1491 5.3618 19 1 -3.5503 3.0140 5.8049 20 1 -2.7353 5.2224 6.3874 21 1 -3.2166 4.6789 4.0737 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4025 -0.9314 27 1 4.6996 1.2092 -0.0827 28 1 5.0203 1.5072 1.6427 29 1 3.6903 -1.1530 0.9341 30 1 5.9128 -0.2065 2.9344 31 1 5.1583 -1.8880 2.8683 32 1 5.9739 -2.1606 0.4819 33 1 6.7286 -0.4792 0.5475 34 1 1.3780 2.6761 4.4727 35 1 -0.3913 3.9498 6.9976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706708708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:42 Heat of formation + Delta-G solvation = -11.913274 kcal Electronic energy + Delta-G solvation = -18789.280677 eV Core-core repulsion = 15789.483585 eV Total energy + Delta-G solvation = -2999.797091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82290 -37.69926 -36.72410 -35.70669 -33.94791 -32.44497 -31.37304 -27.71610 -26.03735 -25.17744 -22.42876 -22.22737 -20.50946 -19.49565 -19.00536 -18.04192 -16.56544 -16.33162 -15.39047 -15.07460 -14.86028 -14.28162 -14.05876 -14.00104 -13.71109 -12.86325 -12.82039 -12.59375 -12.39860 -11.79017 -11.58009 -11.47607 -11.37110 -11.15428 -10.66012 -10.48415 -10.39068 -10.35135 -10.11782 -9.83835 -9.68649 -8.88557 -8.35885 -8.17252 -7.88720 -6.64711 -3.96844 2.49059 2.72213 3.15574 3.16968 3.21848 3.45968 3.90240 4.07337 4.29365 4.82648 4.88508 5.03115 5.07057 5.20140 5.44512 5.49780 5.61827 5.64323 5.66536 5.77127 5.85749 5.99599 6.03383 6.18905 6.34919 6.43459 6.56966 6.97284 7.18808 7.31820 7.35521 7.73044 7.84136 8.36481 8.64614 8.99351 9.35378 9.89048 10.50343 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.028812 B = 0.005880 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.576827 B = 4760.478100 C = 5434.229007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.185 4.185 3 C 0.130 3.870 4 N -0.592 5.592 5 C 0.146 3.854 6 C -0.166 4.166 7 C -0.170 4.170 8 C -0.181 4.181 9 C 0.514 3.486 10 O -0.544 6.544 11 C 0.398 3.602 12 O -0.583 6.583 13 N -0.501 5.501 14 C -0.304 4.304 15 H 0.112 0.888 16 C 0.030 3.970 17 N -0.871 5.871 18 Si 0.938 3.062 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.116 0.884 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.128 0.872 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -5.545 -9.463 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.204 4.204 3 C 0.008 3.992 4 N -0.325 5.325 5 C 0.023 3.977 6 C -0.186 4.186 7 C -0.207 4.207 8 C -0.219 4.219 9 C 0.301 3.699 10 O -0.420 6.420 11 C 0.182 3.818 12 O -0.472 6.472 13 N -0.135 5.135 14 C -0.435 4.435 15 H 0.130 0.870 16 C -0.176 4.176 17 N -0.509 5.509 18 Si 0.763 3.237 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.189 1.189 22 H 0.134 0.866 23 H 0.100 0.900 24 H 0.109 0.891 25 H 0.145 0.855 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.239 0.761 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.426 -5.500 -9.335 12.597 hybrid contribution -0.379 -0.030 0.694 0.791 sum 6.046 -5.530 -8.641 11.908 Atomic orbital electron populations 1.23974 0.96069 1.01771 0.96550 1.23006 0.96299 0.97620 1.03504 1.21265 0.92316 0.98817 0.86783 1.47706 1.09160 1.66343 1.09249 1.21034 0.82966 0.92304 1.01442 1.22816 0.94505 0.97113 1.04117 1.22963 1.03561 1.03232 0.90909 1.22930 0.97274 1.01785 0.99901 1.20727 0.89569 0.77289 0.82333 1.90673 1.57870 1.54198 1.39303 1.18931 0.87833 0.89643 0.85367 1.90405 1.54797 1.62475 1.39478 1.41566 1.12360 1.49374 1.10206 1.19841 0.87551 1.38128 0.97938 0.86989 1.25566 1.00587 0.96622 0.94849 1.69489 1.35993 1.42754 1.02654 0.85745 0.80864 0.78484 0.78590 1.19988 1.20602 1.18948 0.86625 0.90000 0.89073 0.85456 0.91853 0.90457 0.90039 0.87731 0.88465 0.89255 0.89115 0.88912 0.76148 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 13.16 29.01 0.38 -2.02 16 2 C -0.19 -2.97 9.43 -36.03 -0.34 -3.31 16 3 C 0.13 2.10 5.56 -5.19 -0.03 2.07 16 4 N -0.59 -10.49 2.48 -175.80 -0.44 -10.92 16 5 C 0.15 2.11 5.69 -4.04 -0.02 2.09 16 6 C -0.17 -2.26 6.01 -90.62 -0.54 -2.80 16 7 C -0.17 -2.24 10.18 -26.73 -0.27 -2.52 16 8 C -0.18 -1.96 10.25 -26.74 -0.27 -2.24 16 9 C 0.51 11.30 7.65 -11.87 -0.09 11.21 16 10 O -0.54 -12.89 16.10 5.42 0.09 -12.80 16 11 C 0.40 9.71 7.70 -11.87 -0.09 9.62 16 12 O -0.58 -14.12 9.77 5.37 0.05 -14.06 16 13 N -0.50 -13.21 5.24 -11.59 -0.06 -13.27 16 14 C -0.30 -8.20 9.67 -15.15 -0.15 -8.35 16 15 H 0.11 3.05 7.15 -52.49 -0.38 2.68 16 16 C 0.03 0.78 5.51 -17.40 -0.10 0.69 16 17 N -0.87 -23.35 13.03 55.53 0.72 -22.62 16 18 Si 0.94 19.96 29.56 -169.99 -5.02 14.93 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H 0.12 2.11 6.52 -52.49 -0.34 1.77 16 23 H 0.08 1.20 8.06 -52.48 -0.42 0.78 16 24 H 0.09 1.35 6.87 -52.48 -0.36 0.99 16 25 H 0.13 2.38 5.11 -51.95 -0.27 2.11 16 26 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 27 H 0.08 0.91 7.85 -51.92 -0.41 0.50 16 28 H 0.08 1.26 7.22 -51.93 -0.37 0.89 16 29 H 0.10 1.51 6.85 -51.93 -0.36 1.15 16 30 H 0.10 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.40 10.90 7.36 -40.82 -0.30 10.60 16 35 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -28.58 299.88 -6.09 -34.67 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -4.43 Total: 15.10 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.53 Total: 4.45 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.23 Total: -46.81 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: 0.14 Total: -26.86 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.58 -6.09 -34.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706708708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.757 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds