Wall clock time and date at job start Mon Mar 30 2020 21:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47434 * 2 1 4 4 C 1.50702 * 109.47075 * 239.99687 * 2 1 3 5 5 H 1.08001 * 119.99766 * 240.00537 * 4 2 1 6 6 C 1.37869 * 119.99946 * 60.00540 * 4 2 1 7 7 N 1.31514 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47049 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47156 * 119.99884 * 8 6 4 11 11 H 1.48498 * 109.47200 * 239.99869 * 8 6 4 12 12 C 1.53003 * 109.46792 * 120.00217 * 2 1 3 13 13 N 1.46507 * 109.46968 * 299.99939 * 12 2 1 14 14 C 1.34775 * 119.99876 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 H 1.08998 * 115.55312 * 350.85762 * 17 16 14 19 19 C 1.53004 * 117.50000 * 136.53220 * 17 16 14 20 20 C 1.52999 * 117.50137 * 205.19197 * 17 16 14 21 21 C 1.52992 * 138.59123 * 121.61744 * 20 17 16 22 22 C 1.52997 * 138.58638 * 23.39744 * 20 17 16 23 23 H 1.08994 * 109.47215 * 300.00313 * 1 2 3 24 24 H 1.09001 * 109.46679 * 59.99994 * 1 2 3 25 25 H 1.08994 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46830 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46739 * 299.99974 * 3 2 1 28 28 H 1.09003 * 109.46595 * 59.99620 * 3 2 1 29 29 H 0.97004 * 120.00285 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46943 * 180.02562 * 12 2 1 31 31 H 1.08994 * 109.47547 * 59.99539 * 12 2 1 32 32 H 0.97000 * 119.99601 * 359.97438 * 13 12 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 34 34 H 1.08999 * 117.49865 * 214.97831 * 19 17 16 35 35 H 1.09002 * 117.49502 * 359.97438 * 19 17 16 36 36 H 1.08996 * 117.49836 * 336.59255 * 21 20 17 37 37 H 1.08996 * 117.50293 * 121.62061 * 21 20 17 38 38 H 1.08996 * 117.50106 * 238.39008 * 22 20 17 39 39 H 1.09006 * 117.49563 * 23.41331 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1860 -4.8160 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 6 1.8775 -0.4909 3.6696 15 8 2.5765 -1.4794 3.7811 16 7 1.4286 0.1448 4.7699 17 6 1.7779 -0.3589 6.1005 18 1 2.2690 -1.3318 6.1209 19 6 2.1964 0.6660 7.1566 20 6 0.8320 -0.0209 7.2546 21 6 -0.0110 -0.7543 8.2997 22 6 -0.6343 0.3636 7.4614 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7090 1.1612 -3.4844 30 1 3.1300 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2493 32 1 0.9942 0.7582 2.3564 33 1 0.8707 0.9333 4.6810 34 1 2.9627 0.3674 7.8719 35 1 2.2123 1.7151 6.8612 36 1 -0.3110 -1.7780 8.0761 37 1 0.1925 -0.5425 9.3494 38 1 -0.8409 1.3109 7.9594 39 1 -1.3444 0.0752 6.6862 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425576708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:19 Heat of formation + Delta-G solvation = 21.533301 kcal Electronic energy + Delta-G solvation = -18493.973912 eV Core-core repulsion = 15631.460268 eV Total energy + Delta-G solvation = -2862.513645 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.76790 -38.20687 -36.35747 -34.05710 -33.24816 -31.44224 -30.36176 -25.71112 -25.58869 -24.83809 -22.65309 -22.16944 -20.55225 -19.56774 -18.77360 -18.04645 -16.18312 -15.81045 -15.21465 -14.97726 -14.92703 -14.61036 -14.26756 -13.53747 -13.01303 -12.88227 -12.55992 -12.16635 -12.02530 -11.73392 -11.39355 -11.19289 -10.92137 -10.78113 -10.64731 -10.36770 -10.33417 -10.19848 -10.10898 -9.77827 -9.61865 -9.29744 -8.76950 -8.75867 -8.40131 -8.16611 -6.01096 -4.10904 2.87950 3.28236 3.36694 3.36849 3.41943 3.64507 3.81538 4.16052 4.39711 4.62937 4.71513 4.83743 5.25842 5.28665 5.39669 5.45546 5.52424 5.62068 5.66003 5.84698 5.92309 6.22882 6.37994 6.52204 6.66956 6.81197 6.84191 6.92428 7.04592 7.09803 7.31696 7.42635 7.57259 7.71245 8.02462 8.13815 8.39196 8.47787 8.89210 9.03067 9.54932 11.00373 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.048374 B = 0.003926 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.687455 B = 7129.834065 C = 7291.579082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.701 3.299 15 O -0.598 6.598 16 N -0.724 5.724 17 C 0.162 3.838 18 H 0.138 0.862 19 C -0.143 4.143 20 C -0.251 4.251 21 C -0.125 4.125 22 C -0.129 4.129 23 H 0.005 0.995 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.005 0.995 29 H 0.259 0.741 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.394 0.606 33 H 0.396 0.604 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 2.406 16.899 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.401 3.599 15 O -0.477 6.477 16 N -0.377 5.377 17 C 0.055 3.945 18 H 0.156 0.844 19 C -0.182 4.182 20 C -0.252 4.252 21 C -0.163 4.163 22 C -0.165 4.165 23 H 0.024 0.976 24 H 0.103 0.897 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.228 0.772 33 H 0.229 0.771 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.136 1.579 16.758 16.967 hybrid contribution -0.262 0.415 -0.863 0.993 sum -2.398 1.994 15.895 16.198 Atomic orbital electron populations 1.21816 0.97774 0.99160 0.99981 1.18377 0.92807 0.92798 0.90569 1.21817 0.98586 0.98344 0.99982 1.21031 1.31338 1.12072 0.89848 0.92326 1.24880 0.94878 0.94939 0.98860 1.69816 1.36786 1.22828 1.23079 0.86513 0.78633 0.79764 0.82970 1.19727 1.21088 1.21081 1.21606 0.97931 0.95434 0.82315 1.45513 1.55511 1.33016 1.04522 1.16023 0.80411 0.82886 0.80593 1.90876 1.43094 1.27727 1.86001 1.44530 1.56699 1.32678 1.03795 1.21078 0.97844 0.98446 0.77170 0.84412 1.23298 0.94267 0.98803 1.01794 1.22163 0.91352 1.08319 1.03409 1.22624 1.00887 0.97278 0.95468 1.22606 0.92261 0.99426 1.02256 0.97574 0.89654 0.95450 0.95437 0.89650 0.97577 0.93097 0.92881 0.92900 0.77160 0.77095 0.87965 0.88422 0.88537 0.88597 0.88702 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.28 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 13 N -0.73 -13.35 4.96 -65.22 -0.32 -13.67 16 14 C 0.70 12.77 8.57 -86.92 -0.74 12.03 16 15 O -0.60 -13.21 15.91 5.29 0.08 -13.12 16 16 N -0.72 -9.98 5.57 -58.68 -0.33 -10.31 16 17 C 0.16 2.03 6.43 -67.93 -0.44 1.60 16 18 H 0.14 1.95 7.40 -51.93 -0.38 1.57 16 19 C -0.14 -1.41 10.46 -26.69 -0.28 -1.69 16 20 C -0.25 -2.55 5.60 -154.48 -0.87 -3.41 16 21 C -0.13 -1.07 10.53 -26.73 -0.28 -1.36 16 22 C -0.13 -1.12 10.53 -26.73 -0.28 -1.40 16 23 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 24 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 29 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.39 6.42 6.18 -40.82 -0.25 6.17 16 33 H 0.40 4.49 8.84 -40.82 -0.36 4.13 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 318.84 15.07 4.80 4.80 Total: -1.00 -29.13 318.84 -9.13 -38.25 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.11 Total: 8.37 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.75 Total: -6.97 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.13 Total: -47.11 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.13 -9.13 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425576708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.788 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds