Wall clock time and date at job start Mon Mar 30 2020 21:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 5 5 H 1.07998 * 120.00472 * 120.00016 * 4 2 1 6 6 C 1.37879 * 119.99705 * 299.99679 * 4 2 1 7 7 N 1.31516 * 119.99689 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00273 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46892 * 60.00199 * 8 6 4 10 10 H 1.48506 * 109.47288 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47425 * 300.00398 * 8 6 4 12 12 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 13 13 C 1.46899 * 111.00029 * 85.00270 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09009 * 110.85809 * 51.20885 * 14 13 12 16 16 C 1.54630 * 110.97107 * 287.38095 * 14 13 12 17 17 C 1.51282 * 104.19596 * 217.08387 * 16 14 13 18 18 O 1.21277 * 124.94254 * 196.21469 * 17 16 14 19 19 N 1.34416 * 110.11597 * 16.24638 * 17 16 14 20 20 C 1.46501 * 124.34934 * 180.42810 * 19 17 16 21 21 C 1.52997 * 117.50244 * 8.72848 * 20 19 17 22 22 C 1.52998 * 117.50047 * 300.06438 * 20 19 17 23 23 C 1.46766 * 111.30370 * 0.41208 * 19 17 16 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 0.97006 * 119.99890 * 179.97438 * 7 6 4 28 28 H 1.00902 * 111.00190 * 321.03970 * 12 2 1 29 29 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 30 30 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 31 31 H 1.09003 * 110.48149 * 335.75755 * 16 14 13 32 32 H 1.08995 * 110.49107 * 98.40360 * 16 14 13 33 33 H 1.09007 * 115.54997 * 154.39457 * 20 19 17 34 34 H 1.09002 * 117.49569 * 359.97438 * 21 20 19 35 35 H 1.08992 * 117.50086 * 145.01701 * 21 20 19 36 36 H 1.09005 * 117.49877 * 214.97900 * 22 20 19 37 37 H 1.08994 * 117.50192 * 359.97438 * 22 20 19 38 38 H 1.08995 * 110.24636 * 223.98652 * 23 19 17 39 39 H 1.08995 * 110.24679 * 101.98112 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3224 -1.1198 4.0078 9 1 3.8074 -1.1192 4.0076 10 1 1.8278 -0.4195 5.2204 11 1 1.8280 -2.5201 4.0080 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5327 -3.5742 15 1 2.0276 -1.4493 -3.7319 16 6 4.1076 -0.8330 -3.4466 17 6 4.6388 -0.6677 -4.8534 18 8 5.7112 -1.0781 -5.2437 19 7 3.7495 0.0007 -5.6078 20 6 3.9441 0.3244 -7.0233 21 6 5.1457 -0.3029 -7.7328 22 6 5.1516 1.1891 -7.3907 23 6 2.5582 0.3643 -4.8314 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7081 1.1606 3.4844 28 1 1.4495 -1.4979 -1.4101 29 1 1.0870 0.6165 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 4.5827 -0.1196 -2.7732 32 1 4.2657 -1.8531 -3.0966 33 1 3.0318 0.4611 -7.6040 34 1 5.7917 -0.9562 -7.1463 35 1 5.0241 -0.5786 -8.7802 36 1 5.0339 1.8944 -8.2135 37 1 5.8010 1.5175 -6.5793 38 1 1.6560 0.1654 -5.4096 39 1 2.6003 1.4155 -4.5461 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309416474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:26 Heat of formation + Delta-G solvation = -4.752399 kcal Electronic energy + Delta-G solvation = -18542.193940 eV Core-core repulsion = 15678.540462 eV Total energy + Delta-G solvation = -2863.653478 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64435 -37.15858 -36.64750 -35.45059 -32.77158 -31.02339 -28.47341 -27.40905 -25.18524 -23.99889 -22.92222 -22.49276 -20.59342 -20.18024 -19.12136 -16.99599 -16.49170 -16.24355 -15.15307 -14.79446 -14.73853 -14.44647 -14.04859 -13.75867 -13.34275 -13.20129 -13.04079 -12.54772 -11.89029 -11.69713 -11.67245 -11.52950 -11.24462 -11.22061 -10.91152 -10.76718 -10.69560 -10.60958 -10.39460 -10.16585 -9.85758 -9.40612 -9.03407 -8.57694 -8.37376 -7.29287 -6.00104 -4.03453 2.58380 2.82084 3.34321 3.38268 3.41858 3.72245 4.37796 4.43374 4.49564 4.67421 4.77925 4.85178 4.88197 5.11561 5.31217 5.31736 5.47520 5.53006 5.60000 5.63340 5.72871 5.84160 5.96647 6.06028 6.15307 6.21109 6.39513 6.63048 6.65002 6.80010 7.05287 7.08101 7.31668 7.70842 7.85775 8.20728 8.24282 8.48234 8.57841 9.03593 9.62166 11.06887 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.042944 B = 0.003966 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.852789 B = 7058.548003 C = 7452.016500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.071 3.929 14 C -0.095 4.095 15 H 0.088 0.912 16 C -0.136 4.136 17 C 0.517 3.483 18 O -0.536 6.536 19 N -0.596 5.596 20 C 0.080 3.920 21 C -0.192 4.192 22 C -0.192 4.192 23 C 0.110 3.890 24 H 0.089 0.911 25 H 0.004 0.996 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.326 0.674 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 0.452 -17.340 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.312 5.312 13 C -0.060 4.060 14 C -0.114 4.114 15 H 0.106 0.894 16 C -0.176 4.176 17 C 0.307 3.693 18 O -0.414 6.414 19 N -0.328 5.328 20 C -0.024 4.024 21 C -0.229 4.229 22 C -0.231 4.231 23 C -0.014 4.014 24 H 0.107 0.893 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.682 0.462 -17.280 17.493 hybrid contribution -0.864 -0.145 0.614 1.069 sum 1.819 0.317 -16.667 16.769 Atomic orbital electron populations 1.22436 1.00714 0.99206 1.00492 1.19166 0.89574 0.94413 0.86439 0.94868 1.21124 1.30285 1.12489 0.89598 0.91939 1.24949 0.95316 0.95197 0.99068 1.69872 1.37261 1.23215 1.23471 0.86567 0.79228 0.79594 0.82022 1.20262 1.21498 1.20368 1.60798 1.58167 1.08964 1.03273 1.21878 0.98625 0.95686 0.89797 1.22197 0.96030 0.99124 0.94052 0.89391 1.22325 0.95882 1.05908 0.93460 1.21328 0.83390 0.76094 0.88537 1.90569 1.22258 1.51259 1.77281 1.47714 1.20301 1.55987 1.08789 1.21494 0.94057 1.05157 0.81657 1.23750 1.01060 0.97038 1.01049 1.23349 1.01889 0.94238 1.03633 1.22168 0.87260 0.99748 0.92175 0.89267 0.97648 0.95331 0.93015 0.85804 0.95695 0.91253 0.87214 0.87679 0.85583 0.85080 0.88714 0.88374 0.88729 0.90475 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 8.94 37.16 0.33 -3.54 16 2 C 0.21 5.05 2.57 -68.86 -0.18 4.87 16 3 H 0.03 0.87 7.80 -51.93 -0.40 0.47 16 4 C -0.50 -13.35 8.84 -34.44 -0.30 -13.65 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.68 -13.11 6.17 -107.95 -0.67 -13.78 16 13 C 0.07 1.08 4.79 -3.83 -0.02 1.06 16 14 C -0.09 -1.15 3.31 -88.99 -0.29 -1.45 16 15 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 16 C -0.14 -1.85 6.36 -26.74 -0.17 -2.02 16 17 C 0.52 7.53 7.88 -10.86 -0.09 7.44 16 18 O -0.54 -9.33 14.69 5.56 0.08 -9.25 16 19 N -0.60 -7.19 3.27 -164.85 -0.54 -7.73 16 20 C 0.08 0.84 6.88 -67.93 -0.47 0.37 16 21 C -0.19 -2.10 9.77 -26.69 -0.26 -2.36 16 22 C -0.19 -1.97 10.34 -26.69 -0.28 -2.24 16 23 C 0.11 1.14 6.91 -3.12 -0.02 1.12 16 24 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 25 H 0.00 0.09 7.45 -51.92 -0.39 -0.29 16 26 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.33 5.92 8.47 -39.29 -0.33 5.59 16 29 H 0.02 0.37 7.44 -51.93 -0.39 -0.01 16 30 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 31 H 0.11 1.58 7.75 -51.93 -0.40 1.17 16 32 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.13 1.84 5.30 -51.93 -0.28 1.56 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -29.58 315.47 -8.85 -38.43 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.25 Total: 4.97 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.84 Total: -8.99 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.58 Total: -46.13 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.58 -8.85 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309416474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.678 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds