Wall clock time and date at job start Mon Mar 30 2020 21:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 5 5 H 1.07998 * 120.00472 * 120.00016 * 4 2 1 6 6 C 1.37879 * 119.99705 * 299.99679 * 4 2 1 7 7 N 1.31516 * 119.99689 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00273 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46892 * 60.00199 * 8 6 4 10 10 H 1.48506 * 109.47288 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47425 * 300.00398 * 8 6 4 12 12 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 13 13 C 1.46899 * 111.00029 * 85.00270 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09009 * 110.85809 * 51.20885 * 14 13 12 16 16 C 1.54630 * 110.97107 * 287.38095 * 14 13 12 17 17 C 1.51282 * 104.19596 * 217.08387 * 16 14 13 18 18 O 1.21277 * 124.94254 * 196.21469 * 17 16 14 19 19 N 1.34416 * 110.11597 * 16.24638 * 17 16 14 20 20 C 1.46501 * 124.34934 * 180.42810 * 19 17 16 21 21 C 1.52997 * 117.50244 * 8.72848 * 20 19 17 22 22 C 1.52998 * 117.50047 * 300.06438 * 20 19 17 23 23 C 1.46766 * 111.30370 * 0.41208 * 19 17 16 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 0.97006 * 119.99890 * 179.97438 * 7 6 4 28 28 H 1.00902 * 111.00190 * 321.03970 * 12 2 1 29 29 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 30 30 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 31 31 H 1.09003 * 110.48149 * 335.75755 * 16 14 13 32 32 H 1.08995 * 110.49107 * 98.40360 * 16 14 13 33 33 H 1.09007 * 115.54997 * 154.39457 * 20 19 17 34 34 H 1.09002 * 117.49569 * 359.97438 * 21 20 19 35 35 H 1.08992 * 117.50086 * 145.01701 * 21 20 19 36 36 H 1.09005 * 117.49877 * 214.97900 * 22 20 19 37 37 H 1.08994 * 117.50192 * 359.97438 * 22 20 19 38 38 H 1.08995 * 110.24636 * 223.98652 * 23 19 17 39 39 H 1.08995 * 110.24679 * 101.98112 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3224 -1.1198 4.0078 9 1 3.8074 -1.1192 4.0076 10 1 1.8278 -0.4195 5.2204 11 1 1.8280 -2.5201 4.0080 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5327 -3.5742 15 1 2.0276 -1.4493 -3.7319 16 6 4.1076 -0.8330 -3.4466 17 6 4.6388 -0.6677 -4.8534 18 8 5.7112 -1.0781 -5.2437 19 7 3.7495 0.0007 -5.6078 20 6 3.9441 0.3244 -7.0233 21 6 5.1457 -0.3029 -7.7328 22 6 5.1516 1.1891 -7.3907 23 6 2.5582 0.3643 -4.8314 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7081 1.1606 3.4844 28 1 1.4495 -1.4979 -1.4101 29 1 1.0870 0.6165 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 4.5827 -0.1196 -2.7732 32 1 4.2657 -1.8531 -3.0966 33 1 3.0318 0.4611 -7.6040 34 1 5.7917 -0.9562 -7.1463 35 1 5.0241 -0.5786 -8.7802 36 1 5.0339 1.8944 -8.2135 37 1 5.8010 1.5175 -6.5793 38 1 1.6560 0.1654 -5.4096 39 1 2.6003 1.4155 -4.5461 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309416474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:26 Heat of formation + Delta-G solvation = -23.753505 kcal Electronic energy + Delta-G solvation = -18543.017890 eV Core-core repulsion = 15678.540462 eV Total energy + Delta-G solvation = -2864.477428 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.67980 -38.43322 -37.64189 -36.90454 -34.51143 -32.42153 -29.91799 -28.61492 -27.18505 -25.28525 -23.85589 -23.32207 -22.10025 -21.61572 -20.15225 -18.35329 -17.84170 -17.46344 -16.74226 -16.18698 -15.94838 -15.69613 -15.28024 -15.03261 -14.68813 -14.40048 -14.06430 -14.03266 -13.55293 -13.16771 -13.02333 -12.82436 -12.64328 -12.51661 -12.46067 -12.15758 -12.14140 -11.96707 -11.79036 -11.61351 -11.34207 -10.98317 -10.51921 -10.44468 -9.51750 -8.86966 -8.06569 -6.16780 1.45555 1.46572 1.46639 1.54084 1.90603 2.46555 2.89600 3.22179 3.36080 3.42333 3.75645 3.85131 3.97850 4.03793 4.08676 4.25344 4.56952 4.60414 4.66919 4.68797 4.75785 4.77507 4.85433 4.88102 4.97276 5.03180 5.05951 5.17443 5.27414 5.30444 5.49193 5.71817 5.74728 5.88299 6.07343 6.33050 6.70456 6.90975 7.00995 7.12754 7.53411 8.98338 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.042944 B = 0.003966 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.852789 B = 7058.548003 C = 7452.016500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.687 5.687 13 C 0.075 3.925 14 C -0.081 4.081 15 H 0.102 0.898 16 C -0.136 4.136 17 C 0.509 3.491 18 O -0.573 6.573 19 N -0.591 5.591 20 C 0.077 3.923 21 C -0.201 4.201 22 C -0.189 4.189 23 C 0.113 3.887 24 H 0.058 0.942 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.334 0.666 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 0.406 -18.955 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.317 5.317 13 C -0.055 4.055 14 C -0.100 4.100 15 H 0.120 0.880 16 C -0.176 4.176 17 C 0.299 3.701 18 O -0.454 6.454 19 N -0.322 5.322 20 C -0.026 4.026 21 C -0.239 4.239 22 C -0.227 4.227 23 C -0.009 4.009 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.181 0.819 34 H 0.115 0.885 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.501 0.423 -18.919 18.983 hybrid contribution -0.473 -0.107 1.071 1.176 sum 1.027 0.316 -17.848 17.880 Atomic orbital electron populations 1.22238 0.99878 0.99290 1.00208 1.18904 0.90073 0.92710 0.87565 0.97908 1.21481 1.30206 1.12424 0.91218 0.92754 1.25666 0.95575 0.95888 1.01760 1.69996 1.38114 1.24274 1.23907 0.85653 0.78570 0.78773 0.78835 1.20169 1.21183 1.19672 1.60601 1.58046 1.09662 1.03429 1.21860 0.99154 0.95023 0.89449 1.22048 0.94603 0.99752 0.93635 0.87997 1.22273 0.97099 1.05182 0.93013 1.21450 0.83295 0.76316 0.89033 1.90565 1.23854 1.53009 1.77942 1.47825 1.20028 1.54744 1.09618 1.21935 0.95387 1.04551 0.80763 1.23678 1.01197 0.96983 1.02005 1.23365 1.01296 0.94345 1.03699 1.22273 0.87696 0.99580 0.91329 0.92324 0.95062 0.94925 0.93118 0.84863 0.94425 0.92474 0.88503 0.88361 0.81898 0.88542 0.86192 0.85496 0.91268 0.87144 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.06 8.94 71.98 0.64 -6.42 16 2 C 0.22 10.32 2.57 44.17 0.11 10.43 16 3 H 0.00 0.16 7.80 -2.39 -0.02 0.14 16 4 C -0.51 -27.84 8.84 25.60 0.23 -27.62 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.50 5.30 84.65 0.45 0.95 16 7 N -0.92 -52.35 11.32 21.45 0.24 -52.11 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.69 -25.83 6.17 -495.45 -3.06 -28.89 16 13 C 0.08 2.17 4.79 86.30 0.41 2.58 16 14 C -0.08 -1.80 3.31 -9.74 -0.03 -1.84 16 15 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 16 C -0.14 -3.66 6.36 30.59 0.19 -3.46 16 17 C 0.51 14.72 7.88 87.90 0.69 15.41 16 18 O -0.57 -20.55 14.69 -3.02 -0.04 -20.59 16 19 N -0.59 -13.03 3.27 -794.05 -2.60 -15.63 16 20 C 0.08 1.38 6.88 44.99 0.31 1.69 16 21 C -0.20 -4.13 9.77 30.62 0.30 -3.83 16 22 C -0.19 -3.51 10.34 30.62 0.32 -3.19 16 23 C 0.11 1.97 6.91 86.83 0.60 2.57 16 24 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 25 H 0.03 1.20 7.45 -2.38 -0.02 1.18 16 26 H 0.03 1.39 8.13 -2.38 -0.02 1.38 16 27 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 28 H 0.33 11.62 8.47 -89.69 -0.76 10.86 16 29 H 0.04 1.02 7.44 -2.39 -0.02 1.00 16 30 H 0.06 1.80 7.84 -2.39 -0.02 1.78 16 31 H 0.10 2.85 7.75 -2.39 -0.02 2.83 16 32 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.16 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.10 2.76 5.30 -2.39 -0.01 2.75 16 35 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.37 7.89 -2.39 -0.02 1.35 16 Total: -1.00 -65.20 315.47 1.07 -64.13 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.27 Total: 20.16 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.23 Total: -12.72 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -5.41 Total: -96.62 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.04 Total: -20.59 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -65.20 1.07 -64.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309416474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.376 kcal (2) G-P(sol) polarization free energy of solvation -65.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds